{"metadata":{"accession":"IPR039095","entry_id":null,"type":"domain","go_terms":[{"identifier":"GO:0010468","name":"regulation of gene expression","category":{"code":"P","name":"biological_process"}}],"source_database":"interpro","member_databases":{"cdd":{"cd15609":"PHD finger found in Transcription factor 19 (TCF-19) and similar proteins"}},"integrated":null,"hierarchy":{"accession":"IPR001965","name":"Zinc finger, PHD-type","type":"Domain","children":[{"accession":"IPR019787","name":"Zinc finger, PHD-finger","type":"Domain","children":[{"accession":"IPR028940","name":"Bromodomain adjacent to zinc finger domain protein 2A, PHD zinc finger","type":"Domain","children":[]},{"accession":"IPR031202","name":"PHD finger protein 1, PHD finger 1","type":"Domain","children":[]},{"accession":"IPR037373","name":"Transcription intermediary factor 1-beta, PHD domain","type":"Domain","children":[]},{"accession":"IPR037877","name":"HMT2C, 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domain","type":"Domain","children":[]},{"accession":"IPR047256","name":"Tyrosine-protein kinase BAZ1B, PHD finger","type":"Domain","children":[]},{"accession":"IPR047426","name":"Histone-lysine N-methyltransferase NSD1 / NSD2, first PHD finger","type":"Domain","children":[]},{"accession":"IPR047430","name":"Nuclear receptor-binding SET domain-containing protein 1, fourth PHD finger","type":"Domain","children":[]},{"accession":"IPR047467","name":"E3 ubiquitin-protein ligase UHRF2, PHD finger","type":"Domain","children":[]},{"accession":"IPR047970","name":"Lysine-specific demethylase 5A, second PHD finger","type":"Domain","children":[]},{"accession":"IPR047972","name":"Lysine-specific demethylase 5A, third PHD-finger","type":"Domain","children":[]},{"accession":"IPR047973","name":"Lysine-specific demethylase 5A, first PHD-finger","type":"Domain","children":[]},{"accession":"IPR047978","name":"Lysine-specific demethylase 5B, first PHD-finger","type":"Domain","children":[]},{"accession":"IPR047979","name":"Lysine-specific demethylase 5B, third PHD-finger","type":"Domain","children":[]},{"accession":"IPR049781","name":"AF-10/AF-17, PHD finger","type":"Domain","children":[]},{"accession":"IPR058054","name":"PHD finger protein MALE STERILITY 1-like, Zinc finger","type":"Domain","children":[]}]},{"accession":"IPR034732","name":"Extended PHD (ePHD) domain","type":"Domain","children":[{"accession":"IPR039549","name":"JADE2, ePHD domain","type":"Domain","children":[]},{"accession":"IPR041955","name":"ATX3/4/5, ePHD domain","type":"Domain","children":[]},{"accession":"IPR041956","name":"ATX1/2, ePHD domain","type":"Domain","children":[]},{"accession":"IPR041958","name":"KMT2A, ePHD domain","type":"Domain","children":[]},{"accession":"IPR041959","name":"KMT2B, ePHD domain","type":"Domain","children":[]},{"accession":"IPR041961","name":"KMT2D, ePHD1 domain","type":"Domain","children":[]},{"accession":"IPR041964","name":"KMT2D, ePHD2 domain","type":"Domain","children":[]},{"accession":"IPR041967","name":"KMT2C, ePHD1","type":"Domain","children":[]},{"accession":"IPR041968","name":"KMT2C, ePHD2","type":"Domain","children":[]},{"accession":"IPR041972","name":"Transcription factor 20, ePHD domain","type":"Domain","children":[]},{"accession":"IPR042004","name":"BRPF2, ePHD domain","type":"Domain","children":[]},{"accession":"IPR042005","name":"BRPF3, ePHD domain","type":"Domain","children":[]},{"accession":"IPR042013","name":"PHF7/G2E3, ePHD domain","type":"Domain","children":[]},{"accession":"IPR042061","name":"Peregrin, ePHD domain","type":"Domain","children":[]},{"accession":"IPR047482","name":"Lysine-specific demethylase 4A, extended PHD finger","type":"Domain","children":[]},{"accession":"IPR049775","name":"AF-10, extended PHD finger","type":"Domain","children":[]}]},{"accession":"IPR039095","name":"Transcription factor 19, PHD finger","type":"Domain","children":[]},{"accession":"IPR042015","name":"MTF2, PHD domain 2","type":"Domain","children":[]},{"accession":"IPR042017","name":"PHF19, PHD domain 2","type":"Domain","children":[]},{"accession":"IPR043319","name":"ASH1-like, PHD finger","type":"Domain","children":[]},{"accession":"IPR047010","name":"PHD finger protein 1, PHD finger 2","type":"Domain","children":[]},{"accession":"IPR047432","name":"Nuclear receptor-binding SET domain-containing protein 1, fifth PHD finger","type":"Domain","children":[]},{"accession":"IPR047442","name":"Nuclear SET domain-containing protein 2, fifth PHD finger","type":"Domain","children":[]},{"accession":"IPR047458","name":"Histone-lysine N-methyltransferase NSD3, fourth PHD finger","type":"Domain","children":[]},{"accession":"IPR047527","name":"Histone-lysine N-methyltransferase NSD3, fifth PHD finger","type":"Domain","children":[]},{"accession":"IPR055197","name":"Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger","type":"Domain","children":[{"accession":"IPR047429","name":"Nuclear receptor-binding SET domain-containing protein 1, third PHD finger","type":"Domain","children":[]},{"accession":"IPR047441","name":"Nuclear SET domain-containing protein 2, third PHD finger","type":"Domain","children":[]}]},{"accession":"IPR055198","name":"Histone-lysine N-methyltransferase NSD-like, PHD zinc finger","type":"Domain","children":[{"accession":"IPR047428","name":"Nuclear receptor-binding SET domain-containing protein 1, second PHD finger","type":"Domain","children":[]},{"accession":"IPR047439","name":"Nuclear SET domain-containing protein 2, second PHD finger","type":"Domain","children":[]},{"accession":"IPR047456","name":"Histone-lysine N-methyltransferase NSD3, second PHD finger","type":"Domain","children":[]}]},{"accession":"IPR059102","name":"PHF7/G2E3-like, PHD zinc finger domain","type":"Domain","children":[]}]},"name":{"name":"Transcription factor 19, PHD finger","short":"TCF19_PHD"},"description":[{"text":"<p>TCF-19, also termed transcription factor SC1, was identified as a putative trans-activating factor with expression beginning at the late G1-S boundary in dividing cells [[cite:PUB00088919]]. It also functions as a novel islet factor necessary for proliferation and survival in the INS-1 beta cell line. It plays an important role in susceptibility to both type 1 diabetes mellitus (T1DM) and type 2 diabetes mellitus (T2DM); it has been suggested that it may positively impact beta cell mass under conditions of beta cell stress and increased insulin demand [[cite:PUB00088921]].</p>\n\n<p>TCF-19 contains an N-terminal fork head association domain (FHA), a proline rich region, and a C-terminal plant homeodomain (PHD) finger. The FHA domain may serve as a nuclear signaling domain or as a phosphoprotein binding domain. The proline rich region is a common characteristic of trans-activating factors. The PHD finger may allow TCF-19 to interact with chromatin via methylated histone H3 [[cite:PUB00048339]].</p>","llm":false,"checked":false,"updated":false}],"wikipedia":null,"literature":{"PUB00048339":{"PMID":19430464,"ISBN":null,"volume":"459","issue":"7248","year":2009,"title":"Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.","URL":null,"raw_pages":"847-51","medline_journal":"Nature","ISO_journal":"Nature","authors":["Wang GG","Song J","Wang Z","Dormann HL","Casadio F","Li H","Luo JL","Patel DJ","Allis CD."],"DOI_URL":"http://dx.doi.org/10.1038/nature08036"},"PUB00088921":{"PMID":23860123,"ISBN":null,"volume":"305","issue":"5","year":2013,"title":"Tcf19 is a novel islet factor necessary for proliferation and survival in the INS-1 β-cell line.","URL":null,"raw_pages":"E600-10","medline_journal":"Am J Physiol Endocrinol Metab","ISO_journal":"Am. J. Physiol. Endocrinol. Metab.","authors":["Krautkramer KA","Linnemann AK","Fontaine DA","Whillock AL","Harris TW","Schleis GJ","Truchan NA","Marty-Santos L","Lavine JA","Cleaver O","Kimple ME","Davis DB."],"DOI_URL":"https://doi.org/10.1152/ajpendo.00147.2013"},"PUB00088919":{"PMID":1868030,"ISBN":null,"volume":"2","issue":"4","year":1991,"title":"A new growth-regulated complementary DNA with the sequence of a putative trans-activating factor.","URL":null,"raw_pages":"179-86","medline_journal":"Cell Growth Differ","ISO_journal":"Cell Growth Differ.","authors":["Ku DH","Chang CD","Koniecki J","Cannizzaro LA","Boghosian-Sell L","Alder H","Baserga R."],"DOI_URL":null}},"set_info":null,"overlaps_with":[{"accession":"IPR011011","name":"Zinc finger, FYVE/PHD-type","type":"homologous_superfamily"},{"accession":"IPR013083","name":"Zinc finger, RING/FYVE/PHD-type","type":"homologous_superfamily"}],"counters":{"subfamilies":0,"domain_architectures":0,"interactions":0,"matches":282,"pathways":0,"proteins":282,"proteomes":213,"sets":0,"structural_models":{"alphafold":249,"bfvd":0},"structures":0,"taxa":835},"entry_annotations":{},"cross_references":{},"is_llm":false,"is_reviewed_llm":false,"is_updated_llm":false,"representative_structure":null}}