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InterPro-Version: 108.0
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{
"metadata": {
"accession": "IPR026336",
"entry_id": null,
"type": "family",
"go_terms": null,
"source_database": "interpro",
"member_databases": {
"ncbifam": {
"TIGR04123": "ligase-associated DNA damage response endonuclease PdeM"
}
},
"integrated": null,
"hierarchy": {
"accession": "IPR024173",
"name": "Phosphoesterase MJ0037-like",
"type": "Family",
"children": [
{
"accession": "IPR004376",
"name": "Phosphoesterase MJ0037",
"type": "Family",
"children": []
},
{
"accession": "IPR026336",
"name": "Ligase-associated DNA damage response endonuclease PdeM-like",
"type": "Family",
"children": []
}
]
},
"name": {
"name": "Ligase-associated DNA damage response endonuclease PdeM-like",
"short": "PdeM-like"
},
"description": [
{
"text": "<p>This entry represents putative DNA ligase-associated phosphodiesterases, including Ligase-associated DNA damage response endonuclease PdeM from the proteobacteria Derxia gummosa, a class III phosphodiesterase [[cite:PUB00106816]].</p>",
"llm": false,
"checked": false,
"updated": false
}
],
"wikipedia": null,
"literature": {
"PUB00106816": {
"PMID": 25658120,
"ISBN": null,
"volume": "10",
"issue": "2",
"year": 2015,
"title": "Identification and characterization of a novel phosphodiesterase from the metagenome of an Indian coalbed.",
"URL": null,
"raw_pages": "e0118075",
"medline_journal": "PLoS One",
"ISO_journal": "PLoS One",
"authors": [
"Singh DN",
"Gupta A",
"Singh VS",
"Mishra R",
"Kateriya S",
"Tripathi AK."
],
"DOI_URL": null
}
},
"set_info": null,
"overlaps_with": [
{
"accession": "IPR029052",
"name": "Metallo-dependent phosphatase-like",
"type": "homologous_superfamily"
}
],
"counters": {
"subfamilies": 0,
"domain_architectures": 0,
"interactions": 0,
"matches": 5075,
"pathways": 0,
"proteins": 5075,
"proteomes": 3968,
"sets": 0,
"structural_models": {
"alphafold": 3662,
"bfvd": 0
},
"structures": 2,
"taxa": 5825
},
"entry_annotations": {},
"cross_references": {
"gp": {
"displayName": "Genome Properties",
"description": "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.",
"rank": 45,
"accessions": [
{
"accession": "GenProp0977",
"url": "https://www.ebi.ac.uk/interpro/genomeproperties/genome-property/GenProp0977"
}
]
}
},
"is_llm": false,
"is_reviewed_llm": false,
"is_updated_llm": false,
"representative_structure": {
"accession": "6nvp",
"name": "Crystal structure of Pseudomonas putida nuclease MPE"
}
}
}