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{
"metadata": {
"accession": "IPR021848",
"entry_id": null,
"type": "family",
"go_terms": null,
"source_database": "interpro",
"member_databases": {
"pfam": {
"PF11927": "Haem-dependent oxidative N-demethylase, alpha subunit-like"
}
},
"integrated": null,
"hierarchy": {
"accession": "IPR021848",
"name": "Haem-dependent oxidative N-demethylase, alpha subunit-like",
"type": "Family",
"children": []
},
"name": {
"name": "Haem-dependent oxidative N-demethylase, alpha subunit-like",
"short": "HODM_asu-like"
},
"description": [
{
"text": "<p>This entry represents a family of proteins predominantly found in fungi and bacteria, including the alpha subunit of an haem-dependent oxidative N-demethylase (HODM) from Pseudomonas mendocina (Pmen_3455, [swissprot:A4XXY9]). This protein, catalytically active, is responsible for haem, oxygen and NADPH-dependent dimethylamine (DMA) binding. It shows an N- and C-terminally extended PAS haem binding domain structurally similar to the to the Aer2 PAS domain, but lacks the core PAS-domain α-helix that forms the Aer2 haem pocket, and displays extended β-strands and a longer loop [[cite:PUB00100877]].</p>",
"llm": false,
"checked": false,
"updated": false
}
],
"wikipedia": null,
"literature": {
"PUB00100877": {
"PMID": 27851736,
"ISBN": null,
"volume": "539",
"issue": "7630",
"year": 2016,
"title": "An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme.",
"URL": null,
"raw_pages": "593-597",
"medline_journal": "Nature",
"ISO_journal": "Nature",
"authors": [
"Ortmayer M",
"Lafite P",
"Menon BR",
"Tralau T",
"Fisher K",
"Denkhaus L",
"Scrutton NS",
"Rigby SE",
"Munro AW",
"Hay S",
"Leys D."
],
"DOI_URL": null
},
"PUB00100878": {
"PMID": 22622145,
"ISBN": null,
"volume": "48",
"issue": "52",
"year": 2012,
"title": "Structural basis for oxygen sensing and signal transduction of the heme-based sensor protein Aer2 from Pseudomonas aeruginosa.",
"URL": null,
"raw_pages": "6523-5",
"medline_journal": "Chem Commun (Camb)",
"ISO_journal": "Chem Commun (Camb)",
"authors": [
"Sawai H",
"Sugimoto H",
"Shiro Y",
"Ishikawa H",
"Mizutani Y",
"Aono S."
],
"DOI_URL": null
}
},
"set_info": null,
"overlaps_with": null,
"counters": {
"subfamilies": 0,
"domain_architectures": 96,
"interactions": 0,
"matches": 7486,
"pathways": 0,
"proteins": 7314,
"proteomes": 2933,
"sets": 0,
"structural_models": {
"alphafold": 6047,
"bfvd": 0
},
"structures": 3,
"taxa": 5737
},
"entry_annotations": {
"alignment:seed": 210,
"alignment:full": 4566
},
"cross_references": {},
"is_llm": false,
"is_reviewed_llm": false,
"is_updated_llm": false,
"representative_structure": {
"accession": "5lte",
"name": "Crystal structure of the alpha subunit of heme dependent oxidative N-demethylase (HODM)"
}
}
}