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What is this view?

Binary interactions

In this tab, we display the list of interactions that you have selected using one of our search features. Despite the fact that our data are annotated to accurately reflect the interactions reported in scientific literature, the data is shown in this view as binary interactions. Whenever the data was reported as a co-complex involving more than two molecules, we store it as such in the IntAct database and post-process it so the portal can show it as binary interaction. This post-processing is the Spoke Expansion model (connects bait to all preys):



sourceExp

At any moment you can choose to display the expansion column in this view in order to see which interaction are spoke expanded and which are not.

Description of what has changed

  • We have added more download options to allow users to retrieve their interaction set using more standard formats such as PSI-MI XML and PSIMITAB (version 2.5, 2.6 or 2.7) but also XGMML, RDF and Biopax (level 2 and 3).
  • We have now four different table views : minimal(molecule names and interaction AC), basic (minimal + molecule links, interaction detection method, negative), standard(minimal + molecule species, confidences, publication details, experiment details), expanded (standard + more experiment details) and complete (all mitab 2.7 columns).

Configuring the view to your need"

In the header of the interaction table you will find a button: ‘Change Column Display’ that will show you all the columns/Table views available and allow you to update the current selected set.

Downloading the data into Standard formats"

In the header of the interaction table you will find a drop down list that contains all the formats currently supported when downloading the interaction data. Select one of them and click the export button next to the list. Please note that PSI-MI XML is only available when the interaction set is no bigger than 1000 interactions.

Opening the interaction details"

Clicking on the magnifying glass in the first column of the interaction table will open the details of the corresponding interaction in the Interaction Details tab, giving you access to more details of the manually curated record.

What is this view?

Browsing (Browse Tab)

This tab is meant to give you access to more content based on the currently selected set of interactions. Please note that linking to third party resources will only include up to 200 molecules , if you exceed this number you will see the warning icon (This number has been reduced to 125 molecules for mRNA expression). Now let’s look at the features available to you:

Limiting the scope of the current dataset with the Uniprot Taxonomy ontology

Allows users to browse the Uniprot Taxonomy hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset.

Limiting the scope of the current dataset with the GO ontology

Allows users to browse the GO hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset.

Limiting the scope of the current dataset with the ChEBI ontology

Allows users to browse the ChEBI hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset.

Bulk linking to third party resources by using involved proteins

  • Proteins by Reactome pathway: Sends your proteins to the Reactome SkyPainter that will show you the pathways in which these molecules are know to play a role.
  • Proteins by Chromosomal location: Sends your list of proteins to Ensembl’s Karyotype viewer and overlays the proteins on the chromosomes.
  • Proteins by mRNA expression: Sends your set of proteins to the ArrayExpress Atlas that will show the known gene expression based on experimental studies.
What is this view?

Searching Interactions (Search Tab)

As you can see in this tab we are now trying to give you more targeted choice to do your queries, please note that the examples provided in this tab are live links so you can simply click them to see the resulting interactions sets.

Using the Quick Search

In this search panel you are free to type anything that might relate to interactions, whether it is properties of their interactor (gene name, identifiers, GO term…) or more specific to the interaction like publication, authors, experimental detection method, ...

Some examples:

  • Try the query: imatinib
    This is a drug for which we have curated a number of interactions.
    Once you press the search button you should be taken to the Interaction Tab that lists 130 binary interactions.
    If you want to construct more complex queries we recommend you take a look at the Molecular Interaction Query Language, accessible from the quick search panel.
  • Try the query: species:yeast AND type:"direct interaction"
    This query selects all interactions involving yeast interactors that have been shown to have direct interactions. If you customize the column display of the interaction tab, you will see that not only “direct interaction” have been selected but also children terms in the PSI-MI ontology.

Using the Ontology Search

Open the Rearch Tab. This panel is specialised to give you an easy access to ontology search. So far you can search on 4 ontologies:

  • Gene Ontology
  • InterPro
  • PSI-MI
  • ChEBI

Whenever you start typing a query in this search panel, the system will search as you type and propose a list of matching controlled vocabulary terms. You can then select one of them and select matching interactions.

For example, type: cancer
You will be presented with a few choices, please note that each term is followed by the count of matching interactions in the IntAct database.

Select a term with the mouse or using the keyboard cursor keys and you will be taken to the interaction tab.

Searching the Compound chemical structure

In this panel you will be able to draw all or part of a chemical structure and search for chemical compounds. If you get any matched, you can then see all interactions involving them.

First you have to open up the chemical search panel so that the applet can load, it might take a few seconds. Then you can start drawing your structure, for instance:

Once you have drawn your structure, select Similarity and press Search. You should be presented with a list of matching compound. Now choose one molecule and click the link: IntAct interactions. You will be taken to the interaction tab to review the data.

Complex Expansion

Binary interactions generated by co-complex expansion

Why should you care about complex expansion ?

Some experimental methods such as Tandem Affinity Purification do generate molecular interactions that can involve more than 2 molecules. Despite the fact that IntAct curation team do capture the molecular interaction as they were reported in the corresponding experiment, when you search using the intact web site, the results of your query is always shown as set of binary interactions (i.e. 2 molecules). We would like to draw your attention on the fact that whenever the reported interaction was a co-complex we do apply an expansion algorithm that transform this n-ary interaction into a set of binary interactions. While none of these agorithms is perfect and will very likely generate some false positive interactions, it is useful to present the data in a consistent manner. Bear in mind that we will strive to differentiate in the search results which interactions are a real experimental binary from expanded ones.

Existing expansion algorithm

There are several known algorithm allowing to transform an n-ary interaction into a set of binaries. The illustration below present the two well known expansion model and illustrates why they can be incorrect.



sourceExp

  • Spoke expansion: Links the bait molecule to all prey molecules. If N is the count of molecule in the complex, it generated N-1 binary interactions.
  • Matrix expansion: Links all molecule to all other molecule present in the complex. If N is the count of molecule in the complex, it generated (N*(N-1))/2 binary interactions.

Now the issue (as illustrated at the bottom right of the diagram above) with these two models lies in the fact that the real complex might not be articulated around the experimental bait but instead, this bait might be linked to a smaller complex, hence most binary interaction generated by spoke and matrix expansion result in false positive.



PSICQUIC

How is the number of interactions in other databases obtained?

PSICQUIC is a standard way to access molecular interaction databases across which it repeats the same query. The number of databases providing data may vary, depending on the status of their services and only those that are active are used in this query. By clicking on the number of interactions you will be redirected to the PSICQUIC View, where you can browse the results in those other resources.

The services currently active are:

Check the PSICQUIC site for more information.

IMEx

What is the significance of the IMEx dataset?"

IMEx is a network of databases which have agreed to supply a non-redundant set of data expertly manually annotated to the same consistent detailed standard which, as such, represents a high-quality subset of the data each individually provides. The number of databases providing data may vary, depending on the status of their services and only those that are active are used in this query. By clicking on the number of interactions you will be redirected to the IMEx View, where you can browse the results in those other resources.

The services currently active are:

Check the IMEx site for more information.

What is this view?

Representation of Experimental Features

This section shows the graphical representation of experimental features, where each participant is represented as a white rectangle with a black border and a line for each hundredth amino acid. All available features are attached to their associated participant and their categories are represented in the right side of the legend. The left side of the legend dynamically shows the range statuses occuring in the shown interaction. These are the possible range statuses:

sourceExp

Interacting with the widget

Hover over a feature to see more information in a tooltip.
sourceExp

To display a single interacting region click on it and click again to display all interacting regions.
Displaying all interacting regionsDisplaying one interacting region
sourceExpsourceExp
What is this view?

Dynamic molecular interaction data

This section shows the graphical representation of dynamic molecular interactions. By default it displays all the interactions from one experiment using radio buttons to allow users to highlight interactions in different variable conditions.

Publication

PubMed Id: 20562859

Journal: Nature (0028-0836)

Year of Publication: 2010

Title: Network organization of the human autophagy system.

Author List: Behrends C., Sowa ME., Gygi SP., Harper JW.

Cross References:

Database
Identifier
Secondary identifier
Qualifier
-
-

Experiment (5 interactions)

Accession: EBI-3044052

Name: behrends-2010-7

Host organism: Homo sapiens 293 cells transformed with SV40 large T antigen

Organism: Homo sapiens 293 cells transformed with SV40 large T antigen

Accession: EBI-308002

Name: human-293t

Description: Homo sapiens 293 cells transformed with SV40 large T antigen

Cross References:

Database
Identifier
Secondary identifier
Qualifier
human
-

Interaction Detection Method: anti tag coip

Interaction detection method: anti tag coip
Accession: EBI-90

Name: anti tag coip

Description: anti tag coimmunoprecipitation

Cross References:
Database
Identifier
Secondary identifier
Qualifier
psi-mi
MI:0007
-
identity
pubmed
7708014
-
primary-reference


Annotations:
Topic
Text
definition
A specific antibody for the molecule of interest is not available, therefore the bait protein is expressed as a hybrid protein fused to a tag peptide/protein for which efficient and specific antibodies or a specific ligand are available.


Participant Identification Method: sequence tag

Participant identification method: sequence tag
Accession: EBI-81

Name: sequence tag

Description: sequence tag identification

Cross References:
Database
Identifier
Secondary identifier
Qualifier
psi-mi
MI:0102
-
identity
pubmed
10967324
-
primary-reference
pubmed
11752590
-
primary-reference
pubmed
11805837
-
primary-reference


Annotations:
Topic
Text
definition
This approach leads to protein identification by combining mass measurement and short amino acid sequence information obtained by tandem mass spectrometry. This information is then used to automatically find the best match in a sequence database. A mixture of peptides derived from a protease digestion is analysed by nanoelectrospray LC-MS/MS (Liquid Chromatography Tandem Mass Spectrometer or nanoESI MS/MS) mass spectrometry. Electrospray mass spectrometry cannot be applied to dilute samples and is affected by high salt. As a consequence peptides, normally extracted from acrylamide gels by in situ proteolysis, are desalted and concentrated on a microcolumn followed by elution into a capillary used for nanoelectrospray tandem mass spectrometry. A first mass spectrum (Normal mass spectrum or Q1 mass spectrum) gives information about the masses of all the peptides. Peptides observed in the normal mass spectrum are isolated in turn and dissociated into fragments by collision with gas molecules within the mass spectrometer. Some of the fragments obtained from a peptide constitute a nested set, differing by one amino acid, and the mass difference between them allows assignment of a partial sequence. The masses of the fragments define the position of the partial sequence in the peptide. Together with the cleavage specificity of the protease used to cleave the protein, and mass information such sequence tag provides much higher search specificity to match the a database entry. The procedure is repeated with several peptides from the digest, resulting in multiple identifications of the same protein or identification of several proteins from the peptide mixture. Unknown proteins can easily be identified by using the high specificity of the peptide sequence tag for searches in most sequence databases including EST or genome databases.


Cross References:

Database
Identifier
Secondary identifier
Qualifier
-
-

Annotations:

Topic
Text
wade_harper@hms.harvard.edu
Participants were identified based on results from LTQ linear ion trap LC MS/MS.
The bait had a deleted c terminal glycine
High-confidence candidate interaction proteins were identified using CompPASS, an automated MS/MS data-processing component, a protein function/annotation component, and an interaction network analysis component adapted to aid in the identification of interacting proteins that are associated with multiple baits in a network. Interactors were scored using the D score which incorporates the uniqueness, the abundance of the interactor (TSC), and the reproducibility of the interaction to assign a score to each protein within each IP (the same protein in two different IPs may have distinct D scores since its TSC and reproducibility could differ). In this way, the highest scores are given to proteins in each IP that are found rarely, found in duplicate runs, and have high TSCs-all characteristics of proteins that would be considered candidate interactors. A global D score threshold (DT) is determined and all raw D scores (DR) are normalized to this value, producing DN scores. For further details, see PMID: 19615732.
A large number of proteins bind the mutant protein; these are not included in the autophagy interactome built from the wild-type data.
imex curation
Only protein-protein interactions
-

Interaction

Accession: EBI-3046676

Name: gabarapl2-aak1

Description: -

Type: association

Interaction type: association
Accession: EBI-1813191

Name: association

Description: association

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0914
-
identity


Annotations:
Topic
Text
definition
Interaction between molecules that may participate in formation of one, but possibly more, physical complexes. Often describes a set of molecules that are co-purified in a single pull-down or coimmunoprecipitation but might participate in formation of distinct physical complexes sharing a common bait.


Cross References:

Database
Identifier
Secondary identifier
Qualifier
-
-

Annotations:

Topic
Text
Table S3

Participants (458)

Legend:
A
Annotation and Cross Reference  
P
Experimental Parameter   
S
Stoichiometry   
F
Experimental Feature
C
Participant Confidence
pp12345678910pp
#
Name
Links
Primary Identifier
Aliases
Description
Species
Expression system
Experimental role
Biological role
Interactor type
More...
pp12345678910pp
1
EBI-720116
 logo
GABARAPL2
FLC3A
GEF2

[+5]
Gamma-aminobutyric acid receptor-associated protein-like 2
Homo sapiens
Organism Details

Accession: EBI-874

Name: human

Description: Homo sapiens

Cross References:

Database
Identifier
Secondary identifier
Qualifier
human

Expressed In Details

Accession:

Name:

-
bait
Experimental role: bait
Accession: EBI-49

Name: bait

Description: bait

Cross References:
Database
Identifier
Secondary identifier
Qualifier
psi-mi
MI:0496
-
identity
pubmed
14755292
-
primary-reference


Annotations:
Topic
Text
definition
Molecule experimentally treated to capture its interacting partners.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
psi-mi
MI:0499
-
identity
pubmed
14755292
-
primary-reference


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
psi-mi
MI:0326
-
identity
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Accession: EBI-3048502

Name: EBI-720116

P
Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Accession: EBI-3048502

Name: EBI-720116

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Accession: EBI-3048502

Name: EBI-720116

Stoichiometry: 0.0

F
Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

Accession: EBI-3048502

Name: EBI-720116

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
n-terminal region
  • n-n
  • A
    Feature: EBI-3048504

    Feature: n-terminal region

    Accession: EBI-3048504

    Name: n-terminal region


    C
    Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

    Participant: Gamma-aminobutyric acid receptor-associated protein-like 2

    Accession: EBI-3048502

    Name: EBI-720116

    Confidences:

    Type
    Value
    No records found.

    2
    EBI-355653
     logo
    BAF155
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1
    SWI/SNF complex 155 kDa subunit

    [+2]
    SWI/SNF complex subunit SMARCC1
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: SWI/SNF complex subunit SMARCC1

    Participant: SWI/SNF complex subunit SMARCC1

    Accession: EBI-3046698

    Name: EBI-355653

    P
    Participant: SWI/SNF complex subunit SMARCC1

    Participant: SWI/SNF complex subunit SMARCC1

    Accession: EBI-3046698

    Name: EBI-355653

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: SWI/SNF complex subunit SMARCC1

    Participant: SWI/SNF complex subunit SMARCC1

    Accession: EBI-3046698

    Name: EBI-355653

    Stoichiometry: 0.0

    F
    Participant: SWI/SNF complex subunit SMARCC1

    Participant: SWI/SNF complex subunit SMARCC1

    Accession: EBI-3046698

    Name: EBI-355653

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: SWI/SNF complex subunit SMARCC1

    Participant: SWI/SNF complex subunit SMARCC1

    Accession: EBI-3046698

    Name: EBI-355653

    Confidences:

    Type
    Value
    Spectral count =1
    Weighted DNScore =1.63
    1.63
    High
    1

    3
    EBI-752074
     logo
    PRPH
    NEF4
    PRPH1

    [+1]
    Peripherin
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Peripherin

    Participant: Peripherin

    Accession: EBI-3046702

    Name: EBI-752074

    P
    Participant: Peripherin

    Participant: Peripherin

    Accession: EBI-3046702

    Name: EBI-752074

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Peripherin

    Participant: Peripherin

    Accession: EBI-3046702

    Name: EBI-752074

    Stoichiometry: 0.0

    F
    Participant: Peripherin

    Participant: Peripherin

    Accession: EBI-3046702

    Name: EBI-752074

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Peripherin

    Participant: Peripherin

    Accession: EBI-3046702

    Name: EBI-752074

    Confidences:

    Type
    Value
    Spectral count =1
    Weighted DNScore =1.87
    1.87
    High
    1

    4
    EBI-353193
     logo
    Thioredoxin peroxidase 2
    Thioredoxin-dependent peroxide reductase 2
    Proliferation-associated gene protein

    [+5]
    Peroxiredoxin-1
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Peroxiredoxin-1

    Participant: Peroxiredoxin-1

    Accession: EBI-3046706

    Name: EBI-353193

    P
    Participant: Peroxiredoxin-1

    Participant: Peroxiredoxin-1

    Accession: EBI-3046706

    Name: EBI-353193

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Peroxiredoxin-1

    Participant: Peroxiredoxin-1

    Accession: EBI-3046706

    Name: EBI-353193

    Stoichiometry: 0.0

    F
    Participant: Peroxiredoxin-1

    Participant: Peroxiredoxin-1

    Accession: EBI-3046706

    Name: EBI-353193

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Peroxiredoxin-1

    Participant: Peroxiredoxin-1

    Accession: EBI-3046706

    Name: EBI-353193

    Confidences:

    Type
    Value
    Spectral count =6
    Weighted DNScore =2.51
    2.51
    High
    6

    5
    EBI-354533
     logo
    Heparin-binding protein HBp15
    Epstein-Barr virus small RNA-associated protein
    EBER-associated protein

    [+2]
    60S ribosomal protein L22
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: 60S ribosomal protein L22

    Participant: 60S ribosomal protein L22

    Accession: EBI-3046710

    Name: EBI-354533

    P
    Participant: 60S ribosomal protein L22

    Participant: 60S ribosomal protein L22

    Accession: EBI-3046710

    Name: EBI-354533

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: 60S ribosomal protein L22

    Participant: 60S ribosomal protein L22

    Accession: EBI-3046710

    Name: EBI-354533

    Stoichiometry: 0.0

    F
    Participant: 60S ribosomal protein L22

    Participant: 60S ribosomal protein L22

    Accession: EBI-3046710

    Name: EBI-354533

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: 60S ribosomal protein L22

    Participant: 60S ribosomal protein L22

    Accession: EBI-3046710

    Name: EBI-354533

    Confidences:

    Type
    Value
    Spectral count =2
    Weighted DNScore =2.04
    2.04
    High
    2

    6
    EBI-81290
     logo
    Sjoegren syndrome type A antigen
    Ro(SS-A)
    52 kDa ribonucleoprotein autoantigen Ro/SS-A

    [+8]
    E3 ubiquitin-protein ligase TRIM21
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: E3 ubiquitin-protein ligase TRIM21

    Participant: E3 ubiquitin-protein ligase TRIM21

    Accession: EBI-3046714

    Name: EBI-81290

    P
    Participant: E3 ubiquitin-protein ligase TRIM21

    Participant: E3 ubiquitin-protein ligase TRIM21

    Accession: EBI-3046714

    Name: EBI-81290

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: E3 ubiquitin-protein ligase TRIM21

    Participant: E3 ubiquitin-protein ligase TRIM21

    Accession: EBI-3046714

    Name: EBI-81290

    Stoichiometry: 0.0

    F
    Participant: E3 ubiquitin-protein ligase TRIM21

    Participant: E3 ubiquitin-protein ligase TRIM21

    Accession: EBI-3046714

    Name: EBI-81290

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: E3 ubiquitin-protein ligase TRIM21

    Participant: E3 ubiquitin-protein ligase TRIM21

    Accession: EBI-3046714

    Name: EBI-81290

    Confidences:

    Type
    Value
    Spectral count =1
    Weighted DNScore =1.65
    1.65
    High
    1

    7
    EBI-348290
     logo
    Vacuolar proton pump subunit G 2
    V-ATPase 13 kDa subunit 2
    ATP6V1G2

    [+3]
    V-type proton ATPase subunit G 2
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: V-type proton ATPase subunit G 2

    Participant: V-type proton ATPase subunit G 2

    Accession: EBI-3046718

    Name: EBI-348290

    P
    Participant: V-type proton ATPase subunit G 2

    Participant: V-type proton ATPase subunit G 2

    Accession: EBI-3046718

    Name: EBI-348290

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: V-type proton ATPase subunit G 2

    Participant: V-type proton ATPase subunit G 2

    Accession: EBI-3046718

    Name: EBI-348290

    Stoichiometry: 0.0

    F
    Participant: V-type proton ATPase subunit G 2

    Participant: V-type proton ATPase subunit G 2

    Accession: EBI-3046718

    Name: EBI-348290

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: V-type proton ATPase subunit G 2

    Participant: V-type proton ATPase subunit G 2

    Accession: EBI-3046718

    Name: EBI-348290

    Confidences:

    Type
    Value
    Spectral count =1
    Weighted DNScore =1.53
    1.53
    High
    1

    8
    EBI-988094
     logo
    ATG3
    APG3
    APG3L

    [+2]
    Ubiquitin-like-conjugating enzyme ATG3
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Accession: EBI-3046722

    Name: EBI-988094

    P
    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Accession: EBI-3046722

    Name: EBI-988094

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Accession: EBI-3046722

    Name: EBI-988094

    Stoichiometry: 0.0

    F
    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Accession: EBI-3046722

    Name: EBI-988094

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Participant: Ubiquitin-like-conjugating enzyme ATG3

    Accession: EBI-3046722

    Name: EBI-988094

    Confidences:

    Type
    Value
    Spectral count =6
    Weighted DNScore =29.22
    29.22
    High
    6

    9
    EBI-1210765
     logo
    FAM98A
    Protein FAM98A
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Protein FAM98A

    Participant: Protein FAM98A

    Accession: EBI-3046726

    Name: EBI-1210765

    P
    Participant: Protein FAM98A

    Participant: Protein FAM98A

    Accession: EBI-3046726

    Name: EBI-1210765

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Protein FAM98A

    Participant: Protein FAM98A

    Accession: EBI-3046726

    Name: EBI-1210765

    Stoichiometry: 0.0

    F
    Participant: Protein FAM98A

    Participant: Protein FAM98A

    Accession: EBI-3046726

    Name: EBI-1210765

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Protein FAM98A

    Participant: Protein FAM98A

    Accession: EBI-3046726

    Name: EBI-1210765

    Confidences:

    Type
    Value
    Spectral count =1
    Weighted DNScore =1.48
    1.48
    High
    1

    10
    EBI-358122
     logo
    RPL9P7
    RPL9P8
    RPL9P9

    [+3]
    60S ribosomal protein L9
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: 60S ribosomal protein L9

    Participant: 60S ribosomal protein L9

    Accession: EBI-3046730

    Name: EBI-358122

    P
    Participant: 60S ribosomal protein L9

    Participant: 60S ribosomal protein L9

    Accession: EBI-3046730

    Name: EBI-358122

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: 60S ribosomal protein L9

    Participant: 60S ribosomal protein L9

    Accession: EBI-3046730

    Name: EBI-358122

    Stoichiometry: 0.0

    F
    Participant: 60S ribosomal protein L9

    Participant: 60S ribosomal protein L9

    Accession: EBI-3046730

    Name: EBI-358122

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: 60S ribosomal protein L9

    Participant: 60S ribosomal protein L9

    Accession: EBI-3046730

    Name: EBI-358122

    Confidences:

    Type
    Value
    Spectral count =6
    Weighted DNScore =3.41
    3.41
    High
    6

    11
    EBI-356367
     logo
    Lysyl-tRNA synthetase
    KARS
    KIAA0070
    Lysine--tRNA ligase
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Lysine--tRNA ligase

    Participant: Lysine--tRNA ligase

    Accession: EBI-3046734

    Name: EBI-356367

    P
    Participant: Lysine--tRNA ligase

    Participant: Lysine--tRNA ligase

    Accession: EBI-3046734

    Name: EBI-356367

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Lysine--tRNA ligase

    Participant: Lysine--tRNA ligase

    Accession: EBI-3046734

    Name: EBI-356367

    Stoichiometry: 0.0

    F
    Participant: Lysine--tRNA ligase

    Participant: Lysine--tRNA ligase

    Accession: EBI-3046734

    Name: EBI-356367

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Lysine--tRNA ligase

    Participant: Lysine--tRNA ligase

    Accession: EBI-3046734

    Name: EBI-356367

    Confidences:

    Type
    Value
    Spectral count =2
    Weighted DNScore =6.75
    6.75
    High
    2

    12
    EBI-352760
     logo
    Large ribosomal subunit protein eL27
    RPL27
    60S ribosomal protein L27
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: 60S ribosomal protein L27

    Participant: 60S ribosomal protein L27

    Accession: EBI-3046738

    Name: EBI-352760

    P
    Participant: 60S ribosomal protein L27

    Participant: 60S ribosomal protein L27

    Accession: EBI-3046738

    Name: EBI-352760

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: 60S ribosomal protein L27

    Participant: 60S ribosomal protein L27

    Accession: EBI-3046738

    Name: EBI-352760

    Stoichiometry: 0.0

    F
    Participant: 60S ribosomal protein L27

    Participant: 60S ribosomal protein L27

    Accession: EBI-3046738

    Name: EBI-352760

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: 60S ribosomal protein L27

    Participant: 60S ribosomal protein L27

    Accession: EBI-3046738

    Name: EBI-352760

    Confidences:

    Type
    Value
    Spectral count =4
    Weighted DNScore =3.09
    3.09
    High
    4

    13
    EBI-307125
     logo
    NIPSNAP1
    Protein NipSnap homolog 1
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Protein NipSnap homolog 1

    Participant: Protein NipSnap homolog 1

    Accession: EBI-3046742

    Name: EBI-307125

    P
    Participant: Protein NipSnap homolog 1

    Participant: Protein NipSnap homolog 1

    Accession: EBI-3046742

    Name: EBI-307125

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Protein NipSnap homolog 1

    Participant: Protein NipSnap homolog 1

    Accession: EBI-3046742

    Name: EBI-307125

    Stoichiometry: 0.0

    F
    Participant: Protein NipSnap homolog 1

    Participant: Protein NipSnap homolog 1

    Accession: EBI-3046742

    Name: EBI-307125

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Protein NipSnap homolog 1

    Participant: Protein NipSnap homolog 1

    Accession: EBI-3046742

    Name: EBI-307125

    Confidences:

    Type
    Value
    Spectral count =2
    Weighted DNScore =49.2
    49.2
    High
    2

    14
    EBI-374880
     logo
    Pombe cdc5-related protein
    KIAA0432
    PCDC5RP

    [+1]
    Cell division cycle 5-like protein
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Cell division cycle 5-like protein

    Participant: Cell division cycle 5-like protein

    Accession: EBI-3046746

    Name: EBI-374880

    P
    Participant: Cell division cycle 5-like protein

    Participant: Cell division cycle 5-like protein

    Accession: EBI-3046746

    Name: EBI-374880

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Cell division cycle 5-like protein

    Participant: Cell division cycle 5-like protein

    Accession: EBI-3046746

    Name: EBI-374880

    Stoichiometry: 0.0

    F
    Participant: Cell division cycle 5-like protein

    Participant: Cell division cycle 5-like protein

    Accession: EBI-3046746

    Name: EBI-374880

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Cell division cycle 5-like protein

    Participant: Cell division cycle 5-like protein

    Accession: EBI-3046746

    Name: EBI-374880

    Confidences:

    Type
    Value
    Spectral count =5
    Weighted DNScore =4.69
    4.69
    High
    5

    15
    EBI-1051736
     logo
    Protein V-1
    MTPN
    Myotrophin
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Myotrophin

    Participant: Myotrophin

    Accession: EBI-3046750

    Name: EBI-1051736

    P
    Participant: Myotrophin

    Participant: Myotrophin

    Accession: EBI-3046750

    Name: EBI-1051736

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Myotrophin

    Participant: Myotrophin

    Accession: EBI-3046750

    Name: EBI-1051736

    Stoichiometry: 0.0

    F
    Participant: Myotrophin

    Participant: Myotrophin

    Accession: EBI-3046750

    Name: EBI-1051736

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Myotrophin

    Participant: Myotrophin

    Accession: EBI-3046750

    Name: EBI-1051736

    Confidences:

    Type
    Value
    Spectral count =1
    Weighted DNScore =4.57
    4.57
    High
    1

    16
    EBI-2511695
     logo
    LRRC15
    Leucine-rich repeat protein induced by beta-amyloid homolog
    LIB
    Leucine-rich repeat-containing protein 15
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Leucine-rich repeat-containing protein 15

    Participant: Leucine-rich repeat-containing protein 15

    Accession: EBI-3046754

    Name: EBI-2511695

    P
    Participant: Leucine-rich repeat-containing protein 15

    Participant: Leucine-rich repeat-containing protein 15

    Accession: EBI-3046754

    Name: EBI-2511695

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Leucine-rich repeat-containing protein 15

    Participant: Leucine-rich repeat-containing protein 15

    Accession: EBI-3046754

    Name: EBI-2511695

    Stoichiometry: 0.0

    F
    Participant: Leucine-rich repeat-containing protein 15

    Participant: Leucine-rich repeat-containing protein 15

    Accession: EBI-3046754

    Name: EBI-2511695

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Leucine-rich repeat-containing protein 15

    Participant: Leucine-rich repeat-containing protein 15

    Accession: EBI-3046754

    Name: EBI-2511695

    Confidences:

    Type
    Value
    Spectral count =2
    Weighted DNScore =76.76
    76.76
    High
    2

    17
    EBI-300010
     logo
    DNA-binding factor KBF1
    EBP-1
    Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1

    [+1]
    Nuclear factor NF-kappa-B p105 subunit
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Nuclear factor NF-kappa-B p105 subunit

    Participant: Nuclear factor NF-kappa-B p105 subunit

    Accession: EBI-3046758

    Name: EBI-300010

    P
    Participant: Nuclear factor NF-kappa-B p105 subunit

    Participant: Nuclear factor NF-kappa-B p105 subunit

    Accession: EBI-3046758

    Name: EBI-300010

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Nuclear factor NF-kappa-B p105 subunit

    Participant: Nuclear factor NF-kappa-B p105 subunit

    Accession: EBI-3046758

    Name: EBI-300010

    Stoichiometry: 0.0

    F
    Participant: Nuclear factor NF-kappa-B p105 subunit

    Participant: Nuclear factor NF-kappa-B p105 subunit

    Accession: EBI-3046758

    Name: EBI-300010

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Nuclear factor NF-kappa-B p105 subunit

    Participant: Nuclear factor NF-kappa-B p105 subunit

    Accession: EBI-3046758

    Name: EBI-300010

    Confidences:

    Type
    Value
    Spectral count =3
    Weighted DNScore =2.16
    2.16
    High
    3

    18
    EBI-1237307
     logo
    WDR77
    MEP50
    WD repeat-containing protein 77

    [+5]
    Methylosome protein 50
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Methylosome protein 50

    Participant: Methylosome protein 50

    Accession: EBI-3046762

    Name: EBI-1237307

    P
    Participant: Methylosome protein 50

    Participant: Methylosome protein 50

    Accession: EBI-3046762

    Name: EBI-1237307

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Methylosome protein 50

    Participant: Methylosome protein 50

    Accession: EBI-3046762

    Name: EBI-1237307

    Stoichiometry: 0.0

    F
    Participant: Methylosome protein 50

    Participant: Methylosome protein 50

    Accession: EBI-3046762

    Name: EBI-1237307

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Methylosome protein 50

    Participant: Methylosome protein 50

    Accession: EBI-3046762

    Name: EBI-1237307

    Confidences:

    Type
    Value
    Spectral count =2
    Weighted DNScore =3.13
    3.13
    High
    2

    19
    EBI-347528
     logo
    ASF/SF2-associated protein p32
    gC1q-R protein
    C1QBP

    [+7]
    Complement component 1 Q subcomponent-binding protein, mitochondrial
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Accession: EBI-3046766

    Name: EBI-347528

    P
    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Accession: EBI-3046766

    Name: EBI-347528

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Accession: EBI-3046766

    Name: EBI-347528

    Stoichiometry: 0.0

    F
    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Accession: EBI-3046766

    Name: EBI-347528

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Participant: Complement component 1 Q subcomponent-binding protein, mitochondrial

    Accession: EBI-3046766

    Name: EBI-347528

    Confidences:

    Type
    Value
    Spectral count =6
    Weighted DNScore =2.71
    2.71
    High
    6

    20
    EBI-2947180
     logo
    TBC1D2B
    KIAA1055
    TBC1 domain family member 2B
    Homo sapiens
    Organism Details

    Accession: EBI-874

    Name: human

    Description: Homo sapiens

    Cross References:

    Database
    Identifier
    Secondary identifier
    Qualifier
    human

    Expressed In Details

    Accession:

    Name:

    -
    prey
    Experimental role: prey
    Accession: EBI-58

    Name: prey

    Description: prey

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0498
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Molecule experimentally identified as being captured by a given bait.


    unspecified role
    Biological role: unspecified role
    Accession: EBI-77781

    Name: unspecified role

    Description: unspecified role

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0499
    -
    identity
    pubmed
    14755292
    -
    primary-reference


    Annotations:
    Topic
    Text
    definition
    Role not specified or not applicable to the data.


    protein
    Interactor type: protein
    Accession: EBI-619654

    Name: protein

    Description: protein

    Cross References:
    Database
    Identifier
    Secondary identifier
    Qualifier
    psi-mi
    MI:0326
    -
    identity
    pubmed
    14755292
    -
    primary-reference
    so
    SO:0000358
    -
    see-also


    Annotations:
    Topic
    Text
    definition
    A linear polymer of amino acids joined by peptide bonds in a specific sequence.


    A
    Participant: TBC1 domain family member 2B

    Participant: TBC1 domain family member 2B

    Accession: EBI-3046770

    Name: EBI-2947180

    P
    Participant: TBC1 domain family member 2B

    Participant: TBC1 domain family member 2B

    Accession: EBI-3046770

    Name: EBI-2947180

    Parameters:

    Type
    Value
    Unit
    Base
    Exponent
    Uncertainty
    No records found.


    S
    Participant: TBC1 domain family member 2B

    Participant: TBC1 domain family member 2B

    Accession: EBI-3046770

    Name: EBI-2947180

    Stoichiometry: 0.0

    F
    Participant: TBC1 domain family member 2B

    Participant: TBC1 domain family member 2B

    Accession: EBI-3046770

    Name: EBI-2947180

    Features:

    Legend:
    A
    Annotation and Cross Reference  
    Feature Name
    Feature Type
    Detection Method
    Range positions
    More...
    No records found.

    C
    Participant: TBC1 domain family member 2B

    Participant: TBC1 domain family member 2B

    Accession: EBI-3046770

    Name: EBI-2947180

    Confidences:

    Type
    Value
    Spectral count =2
    Weighted DNScore =12.92
    12.92
    High
    2


    Graphical Representation of Experimental Features