{"id":13697,"date":"2024-02-23T11:49:05","date_gmt":"2024-02-23T11:49:05","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/industry\/?page_id=13697"},"modified":"2025-02-09T22:06:57","modified_gmt":"2025-02-09T22:06:57","slug":"data-resources","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/industry\/agri-tech-partnership\/data-resources\/","title":{"rendered":"Data resources"},"content":{"rendered":"\n

Data resources<\/h1>\n\n\n\n
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Major crops, weeds, pests, disease pathogens, are represented in our “omics” data bases:<\/h3>\n\n\n\n
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\n \n \n Ensembl \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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For accurate, annotated genomes & variants<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n Ensembl genomes \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Data for non-vertebrate species, with tools for the manipulation, analysis and visualisation of that data<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n Expression Atlas \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Gene and protein expression profiles across species and conditions. 1000s of high quality manually curated data sets.<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n MGnify \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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World\u2019s largest repository of metagenomics data. Essential for analysis, visualization and discovery of data sets and assemblies<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n IntAct \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Curated protein-protein interactions data base including small chemical compounds and nucleic acid interactions<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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Expert domain knowledge can be integrated from our repositories:<\/h3>\n\n\n\n
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\n \n \n Europe PMC \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Global science literature repository.  Contains millions of full text articles and abstracts and includes books and patents.<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n ChEMBL \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Manually curated large-scale  bioactive drug-like small molecule, target and chemical biology database.<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n SureChEMBL \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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A publicly available large-scale searchable resource containing compounds extracted from the full text, images and attachments of patent documents.<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n MetaboLights \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Curated knowledge of metabolite structures, spectra and biological roles.  The first comprehensive repository of metabolomics studies.<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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\n \n \n Reactome \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n\n \n <\/div>\n\n<\/div>\n<\/div>\n\n\n
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Relational database of signalling and metabolic molecules and their relations organized into biological pathways and processes. Manually curated & peer reviewed.<\/p>\n\n<\/div>\n<\/div>\n<\/div>\n\n<\/div>\n<\/div>\n\n\n

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Integrating EMBL-EBI data with data from repositories from across the globe to enable actionable insights for high yielding, disease resistant and climate resilient agricultural production<\/p>\n <\/div>\n<\/article>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

<\/div>\n","protected":false},"excerpt":{"rendered":"

Data resources<\/p>\n","protected":false},"author":5,"featured_media":0,"parent":13071,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-agri-tech-partnership.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-13697","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/pages\/13697","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/comments?post=13697"}],"version-history":[{"count":26,"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/pages\/13697\/revisions"}],"predecessor-version":[{"id":19819,"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/pages\/13697\/revisions\/19819"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/pages\/13071"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/media?parent=13697"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/industry\/wp-json\/wp\/v2\/embl_taxonomy?post=13697"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}