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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03116 - NQR2_RnfD_RnfE)
FAM  PF03116
PID  NQR2_RnfD_RnfE
DES  NQR2, RnfD, RnfE family
IPR  IPR004338
ANO  8
ALN  490
AID  0.355756
APH  (((((RNFD_HAEIN/1-353:0.47218,RNFD_ECOLI/2-350:0.33056):0.37364,RNFD_RHOCA/1-348:0.78879):0.12879,Q9WY87_THEMA/2-316:0.59558):0.77755,(NQRB_VIBAL/37-407:0.09546,NQRB_HAEIN/38-405:0.20575):0.35708):0.43628,NQRB_CHLPN/36-502:0.17601,NQRB_CHLTR/36-502:0.16341);
ATP  (((((RNFD_HAEIN/1-353,RNFD_ECOLI/2-350),RNFD_RHOCA/1-348),Q9WY87_THEMA/2-316),(NQRB_VIBAL/37-407,NQRB_HAEIN/38-405)),NQRB_CHLPN/36-502,NQRB_CHLTR/36-502);
ATL  4.90109
DNO  8
DLN  1470
DID  0.449477
DPH  (((Q9WY87_THEMA/2-316:0.43714,(RNFD_RHOCA/1-348:0.58280,(RNFD_HAEIN/1-353:0.41345,RNFD_ECOLI/2-350:0.37060):0.19278):0.14464):0.34988,(NQRB_VIBAL/37-407:0.16829,NQRB_HAEIN/38-405:0.22179):0.24689):0.25142,NQRB_CHLPN/36-502:0.21836,NQRB_CHLTR/36-502:0.19356);
DTP  (((Q9WY87_THEMA/2-316,(RNFD_RHOCA/1-348,(RNFD_HAEIN/1-353,RNFD_ECOLI/2-350))),(NQRB_VIBAL/37-407,NQRB_HAEIN/38-405)),NQRB_CHLPN/36-502,NQRB_CHLTR/36-502);
DTL  3.7916
RID  0.355756
RPH  (((((RNFD_HAEIN/1-353:0.47218,RNFD_ECOLI/2-350:0.33056):0.37364,RNFD_RHOCA/1-348:0.78879):0.12879,Q9WY87_THEMA/2-316:0.59558):0.77755,(NQRB_VIBAL/37-407:0.09546,NQRB_HAEIN/38-405:0.20575):0.35708):0.43628,NQRB_CHLPN/36-502:0.17601,NQRB_CHLTR/36-502:0.16341);
RTP  (((((RNFD_HAEIN/1-353,RNFD_ECOLI/2-350),RNFD_RHOCA/1-348),Q9WY87_THEMA/2-316),(NQRB_VIBAL/37-407,NQRB_HAEIN/38-405)),NQRB_CHLPN/36-502,NQRB_CHLTR/36-502);
RTL  4.90109
LNK  NQRB_CHLPN/36-502:Q9Z8B6:AE001626
LNK  NQRB_CHLTR/36-502:O84280:AE001300
LNK  NQRB_HAEIN/38-405:O05011:U32702
LNK  NQRB_VIBAL/37-407:Q56587:AB008030
LNK  Q9WY87_THEMA/2-316:Q9WY87:AE001708
LNK  RNFD_ECOLI/2-350:P76182:U00096
LNK  RNFD_HAEIN/1-353:Q57288:U32841
LNK  RNFD_RHOCA/1-348:Q52715:Y11913
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  NQRB_HAEIN/38-405
ASQ  GTVTHKNTHVRDALDSKRMMITVFLALFPAIFYGMYNVGNQAIPALNQLGNLDQL..-IANDWHYALASSLGLDLTANATWGSKMALGAIFFLPIYLVVFTVCTIWELLFSVVRGHEVNEGMFVSTILFALIVPPTLPLWQAALGITFGIIVAKEIFGGVGRNFMNPALAGRAFLFFAYPAQISGDTVWTA-------------.-------ADGFSGATAL--------------------------------------SQWSQ-------------------------GGQG----------ALQHTVTGA--------PITWMDAFVGN.-LPGSMGEVSTLAILIGGAVIVFTRIAAWRIIAGVMIGMIATSTLFNLIGSETN-------P.MFSMPWHWHFVLGGFALGMVFMATDPVSASFTNTGKWWYGALIGVMAVLIRTVNPAYPEGMMLAILFANL-------FAPIFDYIVVQANIKRR
DSQ  GGTACGGTAACGCACAAAAACACTCACGTTCGTGATGCGTTAGATTCAAAACGTATGATGATTACGGTTTTCCTTGCGTTGTTCCCTGCGATTTTCTATGGGATGTACAATGTGGGTAACCAAGCGATTCCAGCGTTAAATCAATTAGGCAATTTAGATCAACTA......---ATTGCTAACGATTGGCACTATGCTCTTGCAAGTTCATTAGGTTTAGATTTAACTGCCAATGCAACTTGGGGCTCTAAAATGGCTCTTGGAGCAATTTTCTTTTTACCAATTTACTTAGTGGTATTTACCGTTTGTACTATTTGGGAATTGTTATTCTCTGTGGTTCGTGGTCACGAAGTAAATGAAGGAATGTTCGTTTCAACCATTTTATTTGCCTTGATCGTTCCACCAACATTGCCACTATGGCAAGCCGCATTAGGTATTACTTTTGGTATCATTGTTGCAAAAGAAATTTTTGGTGGCGTAGGTCGTAACTTTATGAACCCTGCACTTGCTGGTCGTGCGTTCTTATTCTTCGCATATCCAGCTCAAATTTCAGGCGATACGGTTTGGACTGCC---------------------------------------...---------------------GCAGATGGTTTCTCTGGTGCAACCGCACTT------------------------------------------------------------------------------------------------------------------TCACAGTGGTCACAA---------------------------------------------------------------------------GGTGGTCAAGGT------------------------------GCATTGCAACATACCGTAACAGGGGCT------------------------CCAATTACTTGGATGGATGCTTTTGTTGGTAAC...---TTACCTGGTTCAATGGGGGAAGTTTCTACCCTTGCAATTTTAATTGGCGGTGCTGTTATTGTATTCACTCGCATTGCAGCTTGGCGCATTATTGCTGGTGTGATGATTGGCATGATTGCAACCTCAACCTTGTTTAACCTAATTGGCTCAGAGACTAAC---------------------CCT...ATGTTCTCAATGCCTTGGCATTGGCACTTTGTTTTAGGTGGATTTGCATTGGGTATGGTATTTATGGCGACCGATCCTGTTTCAGCATCTTTTACTAATACTGGTAAATGGTGGTACGGTGCATTAATTGGCGTAATGGCTGTATTAATTCGTACTGTAAACCCAGCCTATCCAGAAGGAATGATGTTAGCGATTTTATTTGCAAACTTA---------------------TTTGCACCGATTTTCGACTACATCGTTGTTCAAGCAAATATCAAACGTCGG
TRN  11011101111011000
NAM  NQRB_VIBAL/37-407
ASQ  GIVTNKSSHVRDSVDLKRIMIMVWFAVFPAMFWGMYNAGGQAIAALNHMYAGDQLatVISGNWHYWLTEMLGGTIAADAGVGSKMLLGATYFLPIYATVFLVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDVVWTA-------------.-------ADGFSGATAL--------------------------------------SQWAQ-------------------------GGNG----------ALVNTVTGS--------PITWMDAFIGN.-IPGSIGEVSTLALMIGAAMIVYMRIASWRIIAGVMIGMIAVSTLFNVIGSDTN-------P.MFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNKGKWWYGILIGAMCVMIRVVNPAYPEGMMLAILFANL-------FAPLFDHVVIEKNIKRR
DSQ  GGTATCGTAACAAATAAAAGCTCGCACGTTCGTGATAGTGTTGACCTAAAACGTATCATGATCATGGTTTGGTTTGCGGTATTCCCAGCAATGTTCTGGGGTATGTACAACGCAGGTGGCCAAGCTATTGCAGCGCTTAACCACATGTACGCTGGTGATCAACTAgcgacaGTTATCTCTGGTAACTGGCACTACTGGCTAACTGAAATGCTGGGCGGAACGATTGCCGCTGATGCAGGGGTTGGCAGTAAGATGCTACTAGGTGCGACCTACTTCCTACCTATCTACGCAACAGTATTCCTTGTTGGTGGTTTCTGGGAAGTGCTTTTCTGTATGGTGCGTAAGCACGAAGTAAACGAAGGCTTCTTTGTTACTTCTATCTTGTTCGCACTTATCGTTCCACCAACGCTACCTCTATGGCAAGCGGCACTAGGTATCACATTTGGTGTTGTTGTTGCGAAGGAGATCTTCGGTGGTACAGGTCGTAACTTCCTTAACCCTGCACTTGCAGGTCGTGCATTCCTATTCTTCGCTTACCCAGCGCAAATCTCGGGTGACGTAGTATGGACTGCA---------------------------------------...---------------------GCTGACGGCTTCTCTGGTGCAACTGCTCTT------------------------------------------------------------------------------------------------------------------AGCCAATGGGCTCAA---------------------------------------------------------------------------GGTGGTAACGGT------------------------------GCTCTAGTTAACACAGTAACTGGTTCT------------------------CCTATCACTTGGATGGACGCTTTCATCGGTAAC...---ATCCCTGGCTCTATTGGTGAAGTATCGACTCTAGCTCTAATGATCGGTGCAGCGATGATCGTTTACATGCGAATCGCTTCATGGCGCATCATTGCGGGCGTAATGATCGGTATGATTGCAGTATCGACTCTGTTTAACGTGATCGGTTCTGACACTAAC---------------------CCA...ATGTTCAACATGCCATGGCACTGGCACCTAGTTCTAGGTGGTTTTGCATTCGGTATGTTCTTCATGGCAACGGACCCAGTATCAGCGTCATTTACTAACAAAGGTAAATGGTGGTACGGCATCCTGATTGGTGCAATGTGTGTGATGATCCGTGTAGTTAACCCGGCGTACCCAGAAGGTATGATGCTGGCGATTCTATTCGCGAACCTA---------------------TTCGCACCTCTGTTCGACCATGTAGTGATTGAGAAGAACATCAAGCGGAGA
TRN  10010101100011001
NAM  NQRB_CHLTR/36-502
ASQ  LHTPSSPPFVRDAVDVKRWMMLVVIALMPTIFAAVWNSGLQALVYQ----SSDPR..IMEAFLHISGFKSYFSFVSQEIGIGSVLFAGCKIFLPLLFISYAVGGTCEVLFAIIRKHKIAEGLLVTGMLYPLILPPTIPYWMAALGIAFGVVMGKELFGGTGMNILNPALTGRAFLFFTFPAKMSGD-VWVGSNPSRIKESLATMsSLAEKSHFDGFSQSTCLQVLNSTPPSVKRVHIDAIASNILNLEHVPTQDVLQTQFATWAESYPGLTVDQLSLEQLQNFVTTPITEGGLGLLPAHFDSACSLTEAVYGIG-------KFSTGNLFFGN.-ILGSLGETSTVACLLGAGLLLLTGIASWRTMLSFGLSAFFFAWFFKIMSILTTGNAGAWAPaKFFIPAYRHLCIGGLAFGLVFMATDPVSSPAMKLAKWLYGAFIGFLTILIRLINPAYPEGVMLAILLGNV-------FAPLFDNIALKQYRQRR
DSQ  CTACACACCCCATCTTCTCCACCGTTCGTTAGAGATGCTGTTGACGTCAAGCGTTGGATGATGTTGGTTGTAATTGCGCTCATGCCAACGATCTTTGCAGCCGTCTGGAATTCGGGTCTACAAGCTCTGGTCTATCAA------------TCCTCTGATCCACGA......ATCATGGAGGCATTCTTACACATATCTGGATTTAAGAGCTATTTTTCATTCGTTTCACAAGAGATCGGTATAGGATCCGTCCTTTTTGCTGGATGCAAAATTTTTCTCCCTCTCCTCTTCATTAGCTATGCTGTAGGAGGAACTTGCGAAGTTCTTTTTGCTATTATTCGTAAGCATAAAATAGCAGAAGGACTGTTAGTAACAGGAATGCTTTACCCGCTAATCCTTCCTCCTACTATTCCTTATTGGATGGCTGCCCTTGGCATTGCTTTTGGAGTAGTTATGGGGAAAGAACTTTTTGGCGGCACAGGAATGAATATTCTCAACCCAGCCTTAACAGGACGAGCTTTTCTATTCTTTACATTCCCTGCTAAAATGAGTGGAGAC---GTTTGGGTTGGCAGTAACCCTAGCAGAATTAAAGAAAGCCTTGCAACGATGagcTCTTTGGCAGAGAAGAGCCATTTCGATGGATTTTCTCAATCCACTTGTTTACAAGTTCTGAATTCGACTCCTCCATCCGTCAAACGTGTTCACATCGATGCCATAGCCTCTAATATCTTAAATCTTGAACATGTTCCTACCCAAGATGTTCTCCAGACTCAATTTGCGACATGGGCAGAATCTTATCCAGGTTTAACAGTAGATCAACTTTCCTTAGAACAACTTCAAAATTTTGTAACTACTCCGATAACCGAAGGAGGTTTAGGGCTTCTTCCTGCACACTTTGATTCTGCCTGTTCCCTTACTGAGGCTGTTTATGGTATCGGA---------------------AAATTTTCTACAGGAAACCTATTCTTTGGAAAT...---ATTCTAGGATCTTTGGGAGAGACTTCAACTGTAGCGTGCTTACTAGGTGCGGGGCTTCTTTTGTTAACAGGAATCGCTTCTTGGCGAACTATGCTATCTTTTGGTCTAAGTGCTTTTTTCTTTGCATGGTTCTTTAAAATCATGAGCATCTTAACAACCGGGAATGCTGGTGCTTGGGCTCCTgcaAAGTTCTTTATTCCTGCCTATCGCCATCTTTGTATTGGAGGCTTAGCATTCGGGCTAGTATTTATGGCTACCGATCCAGTTTCTTCCCCTGCAATGAAGCTTGCAAAATGGCTGTATGGCGCTTTTATAGGATTTCTAACAATTCTCATACGTTTAATCAATCCTGCATACCCTGAAGGAGTTATGTTAGCCATCCTATTAGGGAACGTG---------------------TTTGCTCCATTATTTGATAACATCGCTCTTAAGCAATACAGACAACGGAGA
TRN  10010101100011000
NAM  NQRB_CHLPN/36-502
ASQ  IETPSKPPFIRDSVDVKRWMMLVVIALFPATFVAIWNSGLQSIVYS----SGNPV..LMEQFLHISGFGSYLSFVYKEIHIVPILWEGLKIFIPLLTISYVVGGTCEVLFAVVRGHKIAEGLLVTGILYPLTLPPTIPYWMAALGIAFGIVVSKELFGGTGMNILNPALSGRAFLFFTFPAKMSGD-VWVGSNPGVIKDSLMKMnSSTGKVLIDGFSQSTCLQTLNSTPPSVKRLHVDAIAANMLHIPHVPTQDVIHSQFSLWTETHPGWVLDNLTLTQLQTFVTAPVAEGGLGLLPTQFDSAYAITDVIYGIG-------KFSAGNLFWGN.-IIGSLGETSTFACLLGAIFLIVTGIASWRTMAAFGIGAFLTGWLFKFISVLIVGQNGAWAPaRFFIPAYRQLFLGGLAFGLVFMATDPVSSPTMKLGKWIYGFFIGFMTIVIRLINPAYPEGVMLAILLGNV-------FAPLIDYFAVRKYRKRG
DSQ  ATTGAAACCCCTTCCAAGCCTCCTTTCATCCGCGATTCTGTAGATGTTAAGCGTTGGATGATGCTTGTTGTTATCGCTTTGTTTCCCGCGACCTTTGTTGCGATCTGGAATTCAGGACTTCAATCTATCGTTTATAGC------------TCAGGCAATCCTGTG......CTGATGGAGCAATTCTTACATATTTCTGGATTTGGTAGTTATTTATCCTTTGTTTACAAAGAGATCCATATAGTTCCTATCCTTTGGGAAGGACTTAAGATCTTTATTCCTCTACTTACGATTAGCTATGTTGTCGGGGGTACTTGTGAGGTCCTATTTGCTGTAGTTCGTGGGCATAAAATCGCAGAAGGACTGCTAGTAACCGGAATCCTCTATCCCCTTACTCTCCCTCCGACAATTCCTTACTGGATGGCAGCCTTAGGGATCGCCTTTGGTATTGTTGTCAGTAAAGAGCTCTTCGGAGGCACAGGGATGAACATCCTCAATCCTGCTCTATCAGGAAGGGCATTCTTATTTTTTACGTTTCCAGCAAAGATGAGTGGTGAC---GTTTGGGTAGGAAGCAACCCCGGAGTGATTAAAGATAGCCTCATGAAGATGaacTCCTCGACAGGAAAAGTACTCATTGATGGATTTTCACAGTCTACCTGCCTACAAACTCTAAATTCGACACCTCCCTCTGTAAAGCGTCTGCATGTCGATGCGATTGCTGCAAATATGCTTCACATTCCTCACGTCCCTACTCAAGATGTCATTCACTCACAATTTTCTCTTTGGACAGAGACGCATCCTGGTTGGGTTTTAGATAATCTCACTCTTACACAACTTCAAACGTTTGTTACAGCTCCTGTTGCTGAGGGAGGATTGGGGCTGCTTCCCACACAGTTCGATTCTGCCTATGCTATTACCGATGTGATCTATGGGATTGGG---------------------AAGTTCTCAGCTGGGAATCTCTTTTGGGGAAAC...---ATTATAGGTTCTCTGGGGGAGACCTCCACTTTCGCCTGTCTGTTGGGTGCAATATTCCTTATTGTTACAGGCATTGCCTCTTGGAGAACCATGGCAGCCTTTGGGATAGGAGCCTTTCTCACAGGCTGGCTCTTTAAGTTTATCAGCGTACTCATCGTGGGACAAAACGGAGCTTGGGCACCTgctCGATTCTTCATTCCCGCCTATCGGCAGCTTTTCCTCGGAGGACTTGCTTTTGGTTTAGTCTTTATGGCTACGGATCCCGTATCATCGCCGACTATGAAATTAGGGAAATGGATTTACGGATTCTTTATAGGATTTATGACTATTGTGATTCGTCTTATCAATCCTGCGTATCCTGAGGGAGTGATGTTAGCGATCCTTCTGGGCAATGTA---------------------TTTGCCCCTCTTATCGACTATTTTGCTGTTAGAAAGTATAGAAAAAGGGGA
TRN  10010101100011000
NAM  Q9WY87_THEMA/2-316
ASQ  KLISAYAPHLREEDDVRKIMLDVLIALSPAVIGAAYFFGWYALFLC---------..--------------------------IAGAVIGELFDIFVMRYLRG-VKDFVPDGS----GAV----TGLLLAMNVSTRLPFWAFLLGLVFALGIGKHVFGGLGQNIFNPALVGRAFLLISFPTYMT---TWVV----------P--.-------GAGFWKSPAD--------------------------------------------------------------------VVTAATP------LALFKEHGVFT--------PYWD-LFIGK.-VGGSLGETSALLLIIGFIYLLLRKRVKIFIPVSYIGTVLVFSSIAYLMNPRYG--------.----DPLFHLLSGGLMLGALFMATDMVTSPITAKGQVIFGIGCGVLTMAIRLFG-AYPEGVSFSILFMNA-------LVPLIDRYTRPRIFGEV
DSQ  AAGCTGATAAGCGCTTACGCTCCACACCTTCGAGAAGAGGATGATGTGAGAAAGATCATGCTGGATGTGCTCATAGCCCTATCACCAGCGGTTATTGGGGCGGCTTATTTCTTCGGATGGTATGCTCTATTTCTCTGT---------------------------......------------------------------------------------------------------------------ATCGCAGGAGCGGTGATAGGTGAGCTGTTCGATATATTCGTCATGAGATACCTGAGAGGA---GTGAAGGATTTCGTCCCGGATGGCAGC------------GGGGCAGTG------------ACAGGACTGCTTCTGGCGATGAACGTGAGCACAAGGCTTCCTTTCTGGGCTTTTTTGTTGGGACTCGTTTTCGCTCTGGGGATCGGGAAACACGTGTTCGGAGGACTCGGCCAGAACATTTTCAACCCTGCGCTCGTCGGAAGAGCGTTTCTGCTCATTTCTTTTCCCACTTACATGACC---------ACCTGGGTTGTA------------------------------CCC------...---------------------GGGGCAGGATTCTGGAAATCTCCAGCGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTAACGGCAGCAACTCCT------------------CTTGCACTTTTCAAGGAACACGGTGTTTTCACA------------------------CCCTATTGGGAT---CTGTTCATAGGTAAG...---GTTGGAGGATCCTTAGGTGAAACGAGTGCACTTCTTCTCATAATTGGTTTCATCTATCTTCTCTTGAGAAAGAGAGTGAAGATATTCATTCCTGTCTCCTATATAGGAACTGTTCTTGTGTTTTCTTCGATAGCTTATTTGATGAATCCAAGGTACGGT------------------------...------------GATCCTCTCTTTCACCTCCTCAGTGGTGGTCTCATGCTCGGTGCACTTTTCATGGCCACCGATATGGTGACGAGTCCCATCACCGCGAAGGGACAGGTGATCTTCGGGATTGGATGTGGCGTTCTCACGATGGCTATAAGACTCTTTGGA---GCGTATCCTGAAGGCGTTTCATTTTCGATCCTTTTCATGAATGCA---------------------CTGGTTCCCCTGATAGACAGGTACACCAGACCGCGCATCTTCGGTGAGGTG
TRN  10010101100011000
NAM  RNFD_ECOLI/2-350
ASQ  VFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQI---------..--------------------------LLASVSALLAEALVLKLRKQSVAATLKDNS----ALL----TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMT---SWLP------PHEIAVNiPGFIDAIQVIFSGHTAS--------G--------------------------GDMNTLRLG----------------------IDGISQATP------LDTFKTSVRAG---HSVEQIMQYPIYSG-.ILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETL--------.---AAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFG-GYPDGVAFAVLLANI-------TVPLIDYYTRPRVYGHR
DSQ  GTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGCAGCCGTGCCAGGAATCGCAGCGCAACTGTGGTTTTTTGGTTGGGGTACTCTCGTTCAGATC---------------------------......------------------------------------------------------------------------------CTGTTGGCATCGGTTAGTGCTCTGTTAGCCGAAGCTCTCGTACTCAAACTACGCAAGCAGTCGGTAGCCGCAACGTTGAAAGATAACTCA------------GCATTGCTG------------ACAGGCTTATTGCTGGCGGTAAGTATTCCCCCCCTCGCGCCATGGTGGATGGTCGTGCTGGGTACGGTGTTTGCGGTGATCATCGCTAAACAGTTGTATGGCGGTCTGGGACAAAACCCGTTTAATCCGGCAATGATTGGTTATGTGGTCTTACTGATCTCCTTCCCCGTGCAGATGACC---------AGCTGGTTACCG------------------CCACATGAAATTGCGGTCAACatcCCTGGTTTTATCGACGCCATCCAGGTTATTTTTAGCGGTCATACCGCCAGT------------------------GGT------------------------------------------------------------------------------GGTGATATGAACACACTACGCTTAGGT------------------------------------------------------------------ATTGATGGCATTAGTCAGGCGACACCG------------------CTGGATACATTTAAAACCTCTGTCCGTGCCGGT---------CATTCGGTTGAACAGATTATGCAATATCCGATCTACAGCGGT---...ATTCTGGCGGGCGCTGGTTGGCAATGGGTAAATCTCGCCTGGCTGGCTGGCGGCGTATGGTTGCTATGGCAGAAAGCGATTCGCTGGCATATTCCCCTCAGCTTCTTAGTAACGCTGGCGTTATGCGCAATGTTGGGCTGGTTGTTCTCACCAGAAACACTG------------------------...---------GCAGCACCGCAAATTCATCTGCTGTCTGGAGCGACCATGCTCGGCGCATTCTTTATTTTGACTGACCCGGTTACCGCTTCTACGACCAATCGTGGTCGTCTTATTTTCGGCGCGCTTGCGGGCTTATTAGTCTGGTTGATCCGCAGTTTCGGC---GGCTATCCTGACGGCGTGGCTTTTGCCGTCCTGCTGGCGAACATC---------------------ACGGTTCCTCTGATCGATTACTACACGCGTCCGCGCGTCTACGGCCATCGC
TRN  10010101100011000
NAM  RNFD_HAEIN/1-353
ASQ  MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQS---------..--------------------------ALAIGTAIIAEFIAIKLRGKKPLNYLSDFS----VAL----TALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMT---TWMP------PINLLQEpPTFSDAFSLIFSGLTTD--------G--------------------------FTLSQLTHN----------------------IDGITQATP------LDSAKIFYKSHTQLNDFYELIKLPIFMGNgTDFAQGWWQINVAFLAGGIFLILKRVIHWQIPVAMLVTF-FCLATATAFTGFTH--------.---LSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHG-NYPDGVAFAILLSNI-------CVPLIDHYTRPRVSGYP
DSQ  ATGTTTAAAATGGTTAGCTCCCCACATACTCATTCAGGAAAACTCACAGCGCATATTATGCTTTGGGCCATTTTGGCAATGATGCCCGCTTTTTTCACGCAAATTTATTATTTTGGATTTGGCGTGGTGCTTCAATCC---------------------------......------------------------------------------------------------------------------GCATTAGCCATTGGTACGGCAATCATTGCGGAATTTATTGCAATAAAATTACGAGGTAAAAAACCGCTCAATTATCTTTCAGATTTCAGC------------GTAGCCCTG------------ACTGCGTTAATTTTGGCAATGGCTATTCCACCTTATGCACCTTATTGGATTATCATCATTGGAACACTCTGTGCAGTTTTATTAGGTAAACAGGTTTATGGGGGGTTAGGGCAAAATCCATTCAATCCCGCGATGATTGGCTATGTAATTCTTCTAATTTCATTCCCATTACAAATGACA---------ACTTGGATGCCA------------------CCAATTAATTTATTACAGGAAccaCCGACTTTTTCAGATGCATTTTCATTAATATTTTCAGGTTTAACCACTGAT------------------------GGA------------------------------------------------------------------------------TTTACGCTTTCACAACTTACGCATAAC------------------------------------------------------------------ATTGATGGTATCACCCAAGCAACGCCT------------------TTGGATAGTGCAAAAATTTTCTATAAAAGTCACACTCAATTAAATGATTTTTATGAGCTAATTAAACTACCTATATTTATGGGTAATggaACTGATTTCGCTCAAGGATGGTGGCAAATCAACGTGGCTTTCTTAGCGGGCGGAATTTTCCTTATTTTAAAACGTGTCATTCACTGGCAAATTCCAGTGGCGATGCTTGTCACCTTT---TTCTGTTTAGCCACTGCGACCGCTTTTACTGGCTTCACGCAT------------------------...---------TTAAGTGCGATTAGCCAACTCGTTAGTGGCGCAATGATGTTTGGTGCATTTTTTATTGCAACAGATCCTGTCACAGCCTCCATTACACCACGCGGAAAAATTATTTTTGGCGCATTAGTGGGGTTATTTGTTTATCTCATTCGTTATCACGGA---AATTATCCAGACGGCGTGGCATTCGCCATTTTATTAAGTAATATT---------------------TGCGTCCCACTTATCGATCATTACACACGTCCGCGCGTATCTGGTTATCCA
TRN  10010101100011000
NAM  RNFD_RHOCA/1-348
ASQ  MHMPVAGPHTHTLFTVSRTMLTVVAALTPATLFGLWEFGWPAIFLF---------..--------------------------LTTVVSAWVFEVACLKIADKPIRPFATDGS----AIL----SGWLVAMTLPPYAPWWVGVIGSFIAIVIAKHLFGGLGQNLFNPAMVARAMLVVALPVQMT---TWIA------PVGLLEG.PSFLHGLSITFLGSQEFD--------------------------------AVSSASTLSH-----------------------IKSQISAG--------ATMGEILPT--------LADLESRLLGF.-VPGSLGETSTVLLALGGLLLLVTRIITPTIPLAVLGTLVTLSAICSFLAPDRF--------.---APPILHLTSGSTMLCAFFIATDYVTSPVTTAGKWVYGIGIGTLVFVIPLRR--LPRGRGLCGALDELGHAPDRNLHPAADLRTVPHRQAAC
DSQ  ATGCACATGCCCGTTGCGGGCCCGCACACCCACACGCTGTTCACCGTTTCCCGCACGATGCTGACGGTGGTGGCGGCGCTGACGCCCGCCACCCTGTTCGGGCTGTGGGAATTCGGCTGGCCCGCGATTTTCCTGTTC---------------------------......------------------------------------------------------------------------------CTGACCACGGTCGTCTCGGCCTGGGTCTTCGAGGTCGCCTGCCTGAAGATCGCGGACAAGCCGATCCGGCCCTTTGCCACCGACGGCTCG------------GCGATCCTG------------TCGGGCTGGCTTGTCGCGATGACGCTGCCGCCCTATGCGCCCTGGTGGGTCGGCGTGATCGGGTCCTTCATCGCCATCGTCATCGCGAAACACCTGTTCGGCGGGCTGGGGCAGAACCTGTTCAACCCGGCGATGGTCGCCCGCGCCATGCTCGTCGTCGCGCTGCCGGTGCAGATGACC---------ACCTGGATCGCG------------------CCGGTCGGCCTGCTGGAGGGC...CCCTCCTTCCTGCACGGGCTGTCGATCACTTTCCTTGGTTCGCAGGAGTTCGAC------------------------------------------------------------------------------------------------GCCGTCTCCTCCGCCTCGACGCTGAGCCAC---------------------------------------------------------------------ATCAAGAGCCAGATCAGCGCGGGC------------------------GCGACGATGGGCGAGATCCTCCCGACG------------------------CTGGCGGATCTGGAAAGCCGTCTTCTGGGCTTC...---GTGCCCGGCAGCCTGGGCGAGACCTCGACCGTGCTTCTGGCACTGGGCGGGCTTTTGCTGCTGGTCACAAGGATCATCACACCGACGATCCCGCTGGCCGTGCTGGGCACGCTGGTCACGCTGTCGGCGATCTGCTCCTTCCTTGCGCCGGACCGCTTC------------------------...---------GCCCCGCCGATCCTGCATCTGACCTCGGGCTCGACGATGCTCTGCGCCTTCTTCATCGCCACCGATTACGTCACCTCGCCGGTCACCACCGCAGGCAAATGGGTCTATGGCATCGGCATCGGCACGCTGGTCTTCGTGATCCCACTTCGGCGC------CTTCCCCGAGGGCGTGGCCTTTGCGGTGCTCTTGATGAACTCGGTCACGCCCCTGATCGAAACCTACATCCGGCCGCGGATCTTCGGACGGTCCCGCACCGGCAAGCCGCTTGC
TRN  10010101100011011
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