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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF02753 - Pili_assembly_C)
FAM  PF02753
PID  Pili_assembly_C
DES  Gram-negative pili assembly chaperone, C-terminal domain
IPR  IPR001829
ANO  19
ALN  107
AID  0.223202
APH  (((((CS31_ECOLI/159-238:1.21963,CAF1M_YERPE/175-253:0.60634):0.41607,(MYFB_YEREN/179-264:0.43599,PSAB_YERPS/178-269:0.48935):0.06540):0.28059,AGGD_ECOLI/170-247:0.45386):0.39473,YRAI_ECOLI/149-227:0.64079):0.12091,((YHCA_ECOLI/139-220:2.08071,LPFB_SALTY/148-228:0.51325):0.57896,(FIMC_ECOLI/161-237:0.56307,FIMC_SALTY/150-226:0.48345):0.21594):0.20330,((((PAPD_ECOLI/146-234:1.92655,(CLPE_ECOLI/155-253:1.40816,HIFB1_HAEIN/160-238:0.76635):0.13830):0.47086,FIMB_BORPE/159-240:0.50440):0.14472,ECPD_ECOLI/156-244:0.80244):0.42866,((FANE_ECOLI/141-224:0.79354,MRKB_KLEPN/149-230:0.65131):0.11566,(SEFB_SALEN/170-246:0.83549,YEHC_ECOLI/161-239:0.72839):0.21317):0.34293):0.01098);
ATP  (((((CS31_ECOLI/159-238,CAF1M_YERPE/175-253),(MYFB_YEREN/179-264,PSAB_YERPS/178-269)),AGGD_ECOLI/170-247),YRAI_ECOLI/149-227),((YHCA_ECOLI/139-220,LPFB_SALTY/148-228),(FIMC_ECOLI/161-237,FIMC_SALTY/150-226)),((((PAPD_ECOLI/146-234,(CLPE_ECOLI/155-253,HIFB1_HAEIN/160-238)),FIMB_BORPE/159-240),ECPD_ECOLI/156-244),((FANE_ECOLI/141-224,MRKB_KLEPN/149-230),(SEFB_SALEN/170-246,YEHC_ECOLI/161-239))));
ATL  20.0442
DNO  19
DLN  321
DID  0.38602
DPH  ((((MRKB_KLEPN/149-230:0.55712,((YRAI_ECOLI/149-227:0.51264,(YHCA_ECOLI/139-220:0.92385,PAPD_ECOLI/146-234:0.77718):0.26431):0.01927,((FIMC_SALTY/150-226:0.41861,FIMC_ECOLI/161-237:0.38951):0.08977,LPFB_SALTY/148-228:0.50992):0.15821):0.07158):0.11819,(FIMB_BORPE/159-240:0.31315,CLPE_ECOLI/155-253:0.76042):0.30624):0.13629,((YEHC_ECOLI/161-239:0.42855,FANE_ECOLI/141-224:0.57378):0.03680,(((CAF1M_YERPE/175-253:0.53945,(AGGD_ECOLI/170-247:0.35835,(PSAB_YERPS/178-269:0.26218,MYFB_YEREN/179-264:0.32795):0.16168):0.02928):0.13130,CS31_ECOLI/159-238:0.73314):0.10075,SEFB_SALEN/170-246:0.34524):0.27385):0.15451):0.05088,HIFB1_HAEIN/160-238:0.54813,ECPD_ECOLI/156-244:0.45768);
DTP  ((((MRKB_KLEPN/149-230,((YRAI_ECOLI/149-227,(YHCA_ECOLI/139-220,PAPD_ECOLI/146-234)),((FIMC_SALTY/150-226,FIMC_ECOLI/161-237),LPFB_SALTY/148-228))),(FIMB_BORPE/159-240,CLPE_ECOLI/155-253)),((YEHC_ECOLI/161-239,FANE_ECOLI/141-224),(((CAF1M_YERPE/175-253,(AGGD_ECOLI/170-247,(PSAB_YERPS/178-269,MYFB_YEREN/179-264))),CS31_ECOLI/159-238),SEFB_SALEN/170-246))),HIFB1_HAEIN/160-238,ECPD_ECOLI/156-244);
DTL  11.7983
RID  0.223202
RPH  (((((CS31_ECOLI/159-238:1.21963,CAF1M_YERPE/175-253:0.60634):0.41607,(MYFB_YEREN/179-264:0.43599,PSAB_YERPS/178-269:0.48935):0.06540):0.28059,AGGD_ECOLI/170-247:0.45386):0.39473,YRAI_ECOLI/149-227:0.64079):0.12091,((YHCA_ECOLI/139-220:2.08071,LPFB_SALTY/148-228:0.51325):0.57896,(FIMC_ECOLI/161-237:0.56307,FIMC_SALTY/150-226:0.48345):0.21594):0.20330,((((PAPD_ECOLI/146-234:1.92655,(CLPE_ECOLI/155-253:1.40816,HIFB1_HAEIN/160-238:0.76635):0.13830):0.47086,FIMB_BORPE/159-240:0.50440):0.14472,ECPD_ECOLI/156-244:0.80244):0.42866,((FANE_ECOLI/141-224:0.79354,MRKB_KLEPN/149-230:0.65131):0.11566,(SEFB_SALEN/170-246:0.83549,YEHC_ECOLI/161-239:0.72839):0.21317):0.34293):0.01098);
RTP  (((((CS31_ECOLI/159-238,CAF1M_YERPE/175-253),(MYFB_YEREN/179-264,PSAB_YERPS/178-269)),AGGD_ECOLI/170-247),YRAI_ECOLI/149-227),((YHCA_ECOLI/139-220,LPFB_SALTY/148-228),(FIMC_ECOLI/161-237,FIMC_SALTY/150-226)),((((PAPD_ECOLI/146-234,(CLPE_ECOLI/155-253,HIFB1_HAEIN/160-238)),FIMB_BORPE/159-240),ECPD_ECOLI/156-244),((FANE_ECOLI/141-224,MRKB_KLEPN/149-230),(SEFB_SALEN/170-246,YEHC_ECOLI/161-239))));
RTL  20.0442
LNK  AGGD_ECOLI/170-247:P46004:U12894
LNK  CAF1M_YERPE/175-253:P26926:AF053947
LNK  CLPE_ECOLI/155-253:Q05433:L05180
LNK  CS31_ECOLI/159-238:P15483:X16944
LNK  ECPD_ECOLI/156-244:P33128:L00680
LNK  FANE_ECOLI/141-224:P25402:X56001
LNK  FIMB_BORPE/159-240:P33409:X64876
LNK  FIMC_ECOLI/161-237:P31697:X51655
LNK  FIMC_SALTY/150-226:P37923:L19338
LNK  HIFB1_HAEIN/160-238:P35757:Z33502
LNK  LPFB_SALTY/148-228:P43661:U18559
LNK  MRKB_KLEPN/149-230:P21646:M55912
LNK  MYFB_YEREN/179-264:P33407:Z21953
LNK  PAPD_ECOLI/146-234:P15319:X61239
LNK  PSAB_YERPS/178-269:P69966:L76301
LNK  SEFB_SALEN/170-246:P33387:L11009
LNK  YEHC_ECOLI/161-239:P33342:U00007
LNK  YHCA_ECOLI/139-220:P28722:U18997
LNK  YRAI_ECOLI/149-227:P42914:U18997
AMK  xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx......xxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  ECPD_ECOLI/156-244
ASQ  SEAPLALKWFWSGSEgkaSLRVTNPTPYYVSFSSGDLEAS-..--GKRYP.....IDVKMIAPFSDEVMKVNGLNGKAN.-SAKVHFYAIND......FGGAIEGNA
DSQ  TCTGAAGCCCCGTTAGCCCTGAAGTGGTTCTGGTCAGGTTCAGAAggtaaggcgTCATTACGAGTGACCAATCCAACCCCTTACTACGTCTCTTTTAGCAGTGGTGATTTAGAAGCTAGC---......------GGTAAACGCTATCCG...............ATTGATGTGAAAATGATTGCACCATTTAGTGATGAGGTCATGAAAGTCAATGGCCTTAATGGCAAAGCGAAT...---TCTGCAAAAGTGCATTTTTACGCCATTAATGAC..................TTTGGTGGCGCAATTGAAGGTAATGCC
TRN  11011101101011000
NAM  YRAI_ECOLI/149-227
ASQ  NDAWKSLEFKRSDHS...-LNIYNPTEYYVVFAGLAVDKT-..-DLTSKI.....---EYIAPGEHKQLPLPASGG---.--KNVKWAAIND......YGGSSGTET
DSQ  AACGATGCGTGGAAATCACTGGAATTTAAACGTAGTGACCATTCA.........---CTCAATATATATAACCCAACTGAATATTACGTCGTATTTGCCGGACTGGCAGTCGATAAAACC---......---GATCTCACAAGCAAAATT...............---------GAATATATCGCGCCCGGAGAACATAAACAGTTACCACTTCCTGCATCTGGCGGA---------...------AAGAACGTGAAATGGGCTGCGATCAATGAT..................TATGGCGGCAGTTCCGGGACAGAAACT
TRN  10010101100011000
NAM  FIMB_BORPE/159-240
ASQ  LTAAADLTFKRKPNG...VLEVHNPTPYYVNLQKLEVGENG..AHGSKTP.....---WMLAPLSSDELRLKGTGA---.--KSVQYWAIDD......FGGVTPYQA
DSQ  CTGACGGCCGCCGCCGACCTGACCTTCAAGCGCAAGCCCAACGGC.........GTGCTGGAGGTGCACAACCCGACGCCGTACTACGTGAACCTGCAAAAGCTGGAGGTGGGCGAGAACGGC......GCGCACGGCAGCAAGACGCCG...............---------TGGATGCTGGCGCCGCTTTCCTCGGACGAGCTGCGCCTGAAAGGGACGGGGGCC---------...------AAGTCGGTGCAGTACTGGGCCATCGACGAC..................TTCGGCGGCGTGACGCCATATCAGGCG
TRN  11011101101011011
NAM  FIMC_SALTY/150-226
ASQ  EDAPTLLKFSRVGNH...-LKITNPSAYYLTLVNISVGAK-..-KIDNVM.....----IAPKS-DMQIPLP---TGAQ.--GNVTFQSVND......YGALTSATT
DSQ  GAAGACGCGCCGACCTTGCTGAAATTTTCCCGTGTCGGCAACCAT.........---CTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATATCAGCGTGGGCGCGAAA---......---AAGATTGATAACGTGATG...............------------ATCGCGCCAAAAAGC---GACATGCAAATTCCCTTACCG---------ACTGGCGCGCAG...------GGCAACGTGACATTTCAGTCCGTCAATGAT..................TACGGCGCATTGACGTCGGCGACAACG
TRN  10010101100011010
NAM  FIMC_ECOLI/161-237
ASQ  DQAAEKLRFRRSANS...-LTLINPTPYYLTVTELNAGTR-..-VLENAL.....----VPPMG-ESTVKLP---SDAG.--SNITYRTIND......YGALTPKMT
DSQ  GATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCT.........---CTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGG---......---GTTCTTGAAAATGCATTG...............------------GTGCCTCCAATGGGC---GAAAGCACGGTTAAATTGCCT---------TCTGATGCAGGA...------AGCAATATTACTTACCGAACAATAAATGAT..................TATGGCGCACTTACCCCCAAAATGACG
TRN  10010101100011010
NAM  PSAB_YERPS/178-269
ASQ  TDSADSLTWRYKGNY...-LEVNNPTPFYMNFYSLRIGDEK..INLSDLGskdeiKNGSYVPPFSSRDFIIPVKNKGKA.--TEVFWQVIND......NGGVSREFK
DSQ  ACGGATAGTGCGGATTCATTAACTTGGAGATATAAAGGTAACTAC.........---TTGGAAGTTAATAATCCAACGCCATTCTACATGAATTTTTATTCACTCCGTATTGGTGATGAAAAA......ATAAATTTATCTGATTTAGGTtcaaaggatgaaataAAAAATGGCAGCTATGTTCCGCCATTCTCTTCTAGGGATTTTATTATTCCGGTAAAAAATAAAGGTAAGGCA...------ACAGAGGTTTTTTGGCAAGTGATTAATGAT..................AATGGTGGTGTGAGCCGGGAATTTAAA
TRN  10010101110011000
NAM  MYFB_YEREN/179-264
ASQ  EEMAGKLIWHRNGQQ...-LQVNNPTPFYMNFKSVSLGNKN..IKLSSAG.....-NENYVAPFAERSFSLPVDMAERP.--AEINWQIIND......LGSESQVFK
DSQ  GAAGAGATGGCAGGAAAATTAATCTGGCACCGTAATGGACAACAG.........---TTGCAGGTTAATAATCCCACTCCATTTTATATGAATTTTAAATCTGTAAGTTTGGGCAACAAAAAT......ATCAAGTTATCTTCTGCCGGA...............---AATGAAAATTATGTCGCGCCTTTCGCGGAAAGAAGTTTTTCATTACCGGTTGATATGGCAGAGCGTCCC...------GCAGAAATCAATTGGCAAATCATTAATGAT..................TTGGGGAGCGAGAGTCAGGTATTTAAA
TRN  10110101110011000
NAM  AGGD_ECOLI/170-247
ASQ  DDVAGKIKWQKVGNK...-LKGVNPTPFYMDIAELRVGEK-..-EITETH.....----YIAPFSSYEYPMPVNGG---.--GDVRWKVVTD......YGGISKTFE
DSQ  GATGATGTAGCAGGAAAAATCAAGTGGCAAAAAGTCGGAAATAAA.........---TTAAAAGGAGTAAACCCAACGCCATTCTATATGGACATTGCTGAGTTGAGAGTAGGTGAAAAA---......---GAAATAACTGAAACCCAT...............------------TATATAGCTCCTTTTTCTTCTTACGAATATCCGATGCCTGTAAATGGGGGG---------...------GGGGACGTCCGATGGAAAGTGGTAACTGAT..................TACGGTGGTATTAGTAAAACATTTGAA
TRN  10010101110011010
NAM  CAF1M_YERPE/175-253
ASQ  IQFAENLSWKVDGGK...-LIAENPSPFYMNIGELTFGGK-..---SIPS.....---HYIPPKSTWAFDLPKGLAGA-.--RNVSWRIIND......QGGLDRLYS
DSQ  ATACAGTTTGCTGAAAACTTAAGCTGGAAAGTTGATGGGGGGAAG.........---CTAATTGCTGAAAACCCCTCACCTTTCTACATGAACATAGGTGAATTAACATTTGGAGGGAAA---......---------AGTATTCCTTCT...............---------CACTATATTCCACCTAAATCGACGTGGGCTTTTGATTTGCCAAAAGGACTAGCGGGAGCA---...------CGTAATGTTTCGTGGAGAATAATTAATGAT..................CAGGGAGGGTTGGATCGTTTGTATTCC
TRN  10010101110011000
NAM  LPFB_SALTY/148-228
ASQ  MDGWNKLQFTSAGAN...QIKVENPSAFNLTFNKFYANGR-..-DIEKTG.....----MVPAKGSLNIELPAGTG---.KVSEVKYNIIND......FGTAGDMLT
DSQ  ATGGACGGCTGGAACAAACTGCAGTTCACCAGCGCAGGGGCTAAC.........CAGATCAAAGTGGAAAACCCATCTGCCTTTAACCTGACGTTTAATAAATTTTATGCCAACGGCCGT---......---GATATTGAAAAAACGGGA...............------------ATGGTTCCGGCAAAAGGCTCATTGAATATTGAACTGCCAGCCGGCACCGGC---------...AAGGTAAGCGAAGTTAAATACAACATTATTAATGAC..................TTTGGCACTGCTGGCGACATGTTGACA
TRN  11011101101011001
NAM  YEHC_ECOLI/161-239
ASQ  KATFKKLLVNRSGNG...-LVIKNDSANWVTISDVKANN--..VKVNYET.....---IMIAPLESQSVNVKSNNAN--.---NWHLTIIDD......HGNYISDKI
DSQ  AAAGCGACATTTAAAAAATTGCTGGTAAATCGCAGTGGCAATGGT.........---TTGGTGATAAAAAATGACTCAGCTAATTGGGTGACGATTTCGGATGTCAAAGCTAATAAT------......GTCAAAGTCAATTATGAAACT...............---------ATTATGATTGCCCCCTTAGAAAGTCAGAGTGTTAATGTCAAAAGTAATAATGCAAAT------...---------AACTGGCATCTGACCATTATCGATGAC..................CATGGCAACTATATTAGTGACAAAATT
TRN  10010101100011000
NAM  SEFB_SALEN/170-246
ASQ  MEIADKLKLERKGNS...-IVIKNPTSSYVNIANIKSGN--..LSFNIPN.....---GYIEPFGYAQLPGGVH-----.--SKITLTILDD......NGAEIIRDY
DSQ  ATGGAGATTGCAGATAAATTAAAGTTAGAGAGAAAAGGAAATAGT.........---ATAGTTATAAAGAATCCAACATCATCATATGTGAATATTGCAAATATTAAATCTGGTAAT------......TTAAGTTTTAATATTCCAAAT...............---------GGATATATTGAGCCATTTGGATATGCTCAATTACCTGGTGGAGTACAT---------------...------AGTAAAATAACTTTGACTATTTTGGATGAT..................AACGGCGCTGAAATTATAAGAGATTAT
TRN  10010101110011000
NAM  MRKB_KLEPN/149-230
ASQ  DAAAEKLALSANGSS...-LSVSNPTPFYITVSRISRNGGK..-ALNSKT.....---VMFAPQSSQTIALSSAVSKG-.--ETLTVNNIND......YGADVAVKV
DSQ  GACGCTGCGGCAGAAAAACTGGCGCTCTCCGCTAACGGCAGCAGC.........---CTGTCCGTCAGTAACCCAACGCCCTTTTATATCACCGTAAGCCGTATCTCCCGTAACGGCGGCAAA......---GCGCTCAACAGCAAAACG...............---------GTCATGTTTGCCCCGCAGTCCAGCCAGACCATCGCCCTCTCTTCAGCGGTGAGCAAAGGC---...------GAGACCCTGACCGTTAACAACATTAATGAT..................TATGGTGCAGATGTCGCAGTGAAAGTT
TRN  11011101101011001
NAM  FANE_ECOLI/141-224
ASQ  DEAENNIKLINSGTD...-SCLENTTPYYFAISDVKINGKS..IDLNSDA....kNKMGVFSPFSKVCLGNVNTSG---.---NITVTAFND......YGVATSYTV
DSQ  GATGAGGCAGAAAATAATATTAAGCTGATTAACTCGGGCACGGAT.........---TCTTGCCTTGAAAATACAACGCCATATTACTTTGCAATTAGTGATGTTAAAATTAATGGCAAATCA......ATTGATTTAAATTCTGATGCA............aaaAATAAGATGGGAGTATTCTCCCCATTCTCGAAAGTTTGTCTGGGAAATGTAAATACTAGTGGA---------...---------AACATCACGGTAACAGCATTTAATGAC..................TATGGCGTTGCAACCAGCTACACTGTT
TRN  11011101101011000
NAM  CS31_ECOLI/159-238
ASQ  INSEGQIEWGIRDGN...-LVAKNKTPYYFTIVNASFNGK-..-ALKTPG.....----TLGPYEQKLYTLPSKISVS-.--GLVKWEIIGD......LGESSETKK
DSQ  ATTAATTCCGAAGGGCAGATAGAATGGGGGATAAGGGATGGTAAT.........---TTAGTAGCAAAGAATAAAACACCTTACTATTTTACTATAGTAAATGCATCGTTTAATGGAAAG---......---GCACTCAAAACACCGGGG...............------------ACGCTAGGGCCGTATGAGCAAAAACTTTACACGCTACCTAGTAAAATTTCTGTATCT---...------GGACTGGTAAAGTGGGAAATTATTGGTGAT..................CTAGGTGAGAGCAGTGAAACAAAGAAA
TRN  10010101100011010
NAM  HIFB1_HAEIN/160-238
ASQ  FDAMKKVVFKATPKG...-VLVDNQTPYYMNYIGLLHQN--..----KPA.....KNVKMVAPFSQAVFEAKGVRS---.--GDKLKWVLVN.....dYGADQEGDA
DSQ  TTCGATGCGATGAAAAAAGTGGTGTTTAAAGCCACGCCTAAAGGT.........---GTGCTGGTAGATAATCAAACACCTTATTATATGAACTATATTGGTTTGTTACATCAAAAT------......------------AAACCTGCG...............AAAAATGTCAAAATGGTTGCGCCTTTTTCTCAAGCGGTATTTGAAGCCAAAGGCGTGCGTTCT---------...------GGCGATAAATTGAAATGGGTATTGGTTAAT...............gatTACGGTGCCGACCAAGAGGGCGATGCC
TRN  11011101101011010
NAM  CLPE_ECOLI/155-253
ASQ  KGAEEGISLQSRPDG...RTMLVNTTPYIFAIGSLLDGNGKriATDNETA.....QKLLMFMPGDEVQVKGNVVKVDSLnDYGELQTWTINQkktptsSGQKASDSL
DSQ  AAAGGGGCAGAAGAAGGCATCAGCCTGCAGAGCCGCCCGGATGGC.........AGGACCATGCTGGTGAACACCACGCCGTACATTTTTGCGATTGGCAGCCTGCTGGACGGAAACGGGAAGagaattGCCACGGATAACGAGACAGCA...............CAGAAACTGCTGATGTTCATGCCGGGGGATGAAGTACAGGTGAAGGGAAATGTGGTGAAAGTGGATTCTCTGaatGATTACGGTGAACTGCAGACCTGGACGATTAATCAGaaaaaaacgccaacgtctTCCGGGCAGAAGGCATCTGATTCGCTG
TRN  10010101100011011
NAM  YHCA_ECOLI/139-220
ASQ  RETWKFLEWRKNGDQ...-IEISNPSNYVVRMTLQFKTLPS..GKTGAIN.....--KTYFLPHTSTTTALTNATD---.--TKVEFYPASR......YGYRGNKYV
DSQ  CGAGAGACCTGGAAATTCCTGGAATGGCGTAAAAATGGCGACCAA.........---ATTGAGATTAGCAACCCCAGTAATTATGTCGTTCGTATGACCTTACAATTTAAAACGCTCCCTTCA......GGAAAAACGGGGGCTATAAAT...............------AAGACCTATTTTCTACCACACACCAGTACAACTACTGCATTAACAAACGCTACGGAT---------...------ACAAAAGTCGAGTTTTACCCAGCCAGCCGA..................TATGGTTATCGCGGTAATAAATATGTC
TRN  10010101100011000
NAM  PAPD_ECOLI/146-234
ASQ  NEVWQDQLILNKVSG...GYRIENPTPYYVTVIGLGGSE--..KQAEEGE.....FETVMLSPRSEQTVKSANYNTPYLsYINDYGGRPVLS......FICNGSRCS
DSQ  AATGAAGTATGGCAGGACCAGTTAATTCTGAACAAAGTCAGCGGT.........GGGTATCGTATTGAAAACCCAACGCCCTATTATGTCACTGTTATTGGTCTGGGAGGAAGTGAA------......AAGCAGGCAGAGGAAGGTGAG...............TTTGAAACCGTGATGCTGTCTCCCCGTTCAGAGCAGACAGTAAAATCGGCAAATTATAATACCCCTTATCTGtctTATATTAATGACTATGGTGGTCGCCCGGTACTGTCG..................TTTATCTGTAATGGTAGCCGTTGCTCT
TRN  11011101101011000
//