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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF02282 - Herpes_UL42)
FAM  PF02282
PID  Herpes_UL42
DES  DNA polymerase processivity factor (UL42)
IPR  IPR003202
ANO  12
ALN  170
AID  0.206618
APH  (((VPAP_HHV11/31-169:0.59417,(O89240_9ALPH/26-159:0.61022,(VPAP_VZVD/25-167:0.83152,((Q65823_9ALPH/31-169:0.45344,VPAP_PRVKA/42-183:0.59337):0.10576,VPAP_EHV1B/34-184:0.44407):0.19821):0.09031):0.24512):1.34523,O89240_9ALPH/166-308:0.46015):0.37824,VPAP_EHV1B/191-330:0.77973,(VPAP_VZVD/174-311:1.18185,((VPAP_HHV11/176-313:0.83385,VPAP_PRVKA/190-316:0.62087):0.12381,Q65823_9ALPH/176-323:0.80880):0.22350):0.12579);
ATP  (((VPAP_HHV11/31-169,(O89240_9ALPH/26-159,(VPAP_VZVD/25-167,((Q65823_9ALPH/31-169,VPAP_PRVKA/42-183),VPAP_EHV1B/34-184)))),O89240_9ALPH/166-308),VPAP_EHV1B/191-330,(VPAP_VZVD/174-311,((VPAP_HHV11/176-313,VPAP_PRVKA/190-316),Q65823_9ALPH/176-323)));
ATL  11.048
DNO  10
DLN  510
DID  0.370992
DPH  ((((VPAP_VZVD/174-311:0.79571,O89240_9ALPH/166-308:0.39276):0.36962,((Q65823_9ALPH/176-323:0.58016,VPAP_PRVKA/190-316:0.34538):0.07194,VPAP_HHV11/176-313:0.50320):0.12214):0.53485,((VPAP_VZVD/25-167:0.61034,O89240_9ALPH/26-159:0.39293):0.21871,VPAP_HHV11/31-169:0.45739):0.20403):0.06307,VPAP_PRVKA/42-183:0.31998,Q65823_9ALPH/31-169:0.28241);
DTP  ((((VPAP_VZVD/174-311,O89240_9ALPH/166-308),((Q65823_9ALPH/176-323,VPAP_PRVKA/190-316),VPAP_HHV11/176-313)),((VPAP_VZVD/25-167,O89240_9ALPH/26-159),VPAP_HHV11/31-169)),VPAP_PRVKA/42-183,Q65823_9ALPH/31-169);
DTL  6.27578
RID  0.199642
RPH  (((O89240_9ALPH/26-159:0.63256,(VPAP_HHV11/31-169:0.57235,(O89240_9ALPH/166-308:0.31326,(((VPAP_PRVKA/190-316:0.60955,Q65823_9ALPH/176-323:0.84437):0.08241,VPAP_HHV11/176-313:0.79977):0.24845,VPAP_VZVD/174-311:1.10690):0.51830):1.49811):0.23626):0.11513,VPAP_VZVD/25-167:0.78514):0.27425,VPAP_PRVKA/42-183:0.63451,Q65823_9ALPH/31-169:0.35717);
RTP  (((O89240_9ALPH/26-159,(VPAP_HHV11/31-169,(O89240_9ALPH/166-308,(((VPAP_PRVKA/190-316,Q65823_9ALPH/176-323),VPAP_HHV11/176-313),VPAP_VZVD/174-311)))),VPAP_VZVD/25-167),VPAP_PRVKA/42-183,Q65823_9ALPH/31-169);
RTL  9.63652
LNK  O89240_9ALPH/166-308:O89240:AB012572
LNK  O89240_9ALPH/26-159:O89240:AB012572
LNK  Q65823_9ALPH/176-323:Q65823:Z54206
LNK  Q65823_9ALPH/31-169:Q65823:Z54206
LNK  VPAP_EHV1B/191-330:P28958:
LNK  VPAP_EHV1B/34-184:P28958:
LNK  VPAP_HHV11/176-313:P10226:X14112
LNK  VPAP_HHV11/31-169:P10226:X14112
LNK  VPAP_PRVKA/190-316:P36702:M94355
LNK  VPAP_PRVKA/42-183:P36702:M94355
LNK  VPAP_VZVD/174-311:P09274:X04370
LNK  VPAP_VZVD/25-167:P09274:X04370
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  O89240_9ALPH/166-308
ASQ  VTFSVNKQQLNKILAIAAK-RRHEQLTFALKAEGGFY--AGTVCDVISFDVDGSAMTQYPYNATTAVSSALVLA-------------CGKK-RAAR-NAPVTAYGSGKPFCLALEDTTAFRNVVQKIKTGSAG......--ADLGFYTAC-NPPMLCVRPHAFGSLTAFL
DSQ  GTTACGTTCTCAGTAAACAAACAGCAATTAAACAAGATTTTGGCTATAGCCGCCAAG---AGACGGCACGAGCAACTAACATTTGCGTTGAAAGCAGAAGGGGGGTTTTAT------GCCGGAACTGTGTGCGATGTTATAAGTTTCGATGTAGACGGGAGCGCAATGACTCAGTATCCGTATAATGCCACGACTGCGGTCTCGTCTGCCCTCGTCTTAGCA---------------------------------------TGCGGGAAGAAA---AGAGCCGCCCGT---AATGCACCCGTGACTGCATATGGGAGCGGAAAACCTTTCTGCCTCGCACTGGAAGACACGACCGCGTTCCGAAACGTCGTACAGAAAATTAAAACCGGCTCGGCAGGG..................------GCAGATTTGGGATTTTATACGGCGTGC---AATCCACCGATGCTATGCGTGCGTCCGCACGCGTTCGGCAGCCTGACCGCTTTTCTA
TRN  10010101100011000
NAM  VPAP_EHV1B/191-330
ASQ  VSMSLSKAQLNKILGVC-K-QAGDPITFQCLFDDTLQVRS--GDRQVVFSVDYQHADN---------------CGVESSSSLLEKMPMKTK---KSAPEPIRGISGRRLFTLVLDEDTNFKQLIQKLKLKNAG......--AVLNFFLDPDSIPMIGLSTKQPFSVMMFF
NAM  Q65823_9ALPH/176-323
ASQ  LAVSLSRPQLSKLQAVA-K-DPNEAVVFAYRRARCLSAES--ASGRASFAARHEGGES-------GAELQLALAPSAGSERI---FARAQGGGRRAALLEVRCSGGAPDFRLELESPSGFRRLLQKVRQVGGD......--ALVRFYLAPASAAMMSVSTAAPEGLTVFF
DSQ  CTCGCCGTCTCGCTCTCGCGGCCGCAGCTCTCAAAGCTGCAGGCAGTTGCC---AAA---GATCCCAACGAGGCGGTGGTATTCGCATACCGGCGCGCCCGTTGCCTGAGCGCCGAGTCC------GCATCGGGCCGAGCTTCGTTCGCCGCGCGCCATGAGGGCGGCGAGTCC---------------------GGGGCAGAGCTCCAGCTGGCGCTCGCCCCGAGCGCAGGCAGCGAGCGCATT---------TTTGCCCGCGCCCAGGGCGGCGGCCGCAGGGCCGCCCTATTGGAAGTGCGCTGCTCTGGCGGGGCGCCTGACTTTCGGCTGGAGTTGGAGTCCCCCTCGGGATTCCGGCGGCTGCTGCAAAAGGTGCGGCAGGTCGGCGGCGAC..................------GCCCTCGTGCGCTTCTACCTCGCGCCCGCCAGCGCCGCCATGATGAGCGTGTCCACAGCGGCGCCGGAGGGGCTGACTGTGTTCTTT
TRN  10010101100011001
NAM  VPAP_PRVKA/190-316
ASQ  VSLTLSRPQVAKLAAVA-K-GAAAGTTFALARGLDFSVSS--SAGVVTFPARDR----------------------DGTAVL---------ERASQRRQGVDAVGATEPFAMTLETAHGLLTLLQRLRAGNAE......--LTFNFFTTPRQAPLFSVTTCGPVRATTFF
DSQ  GTGAGCCTGACGCTCTCGCGCCCCCAGGTGGCCAAGCTCGCCGCCGTGGCG---AAG---GGCGCCGCGGCCGGGACGACCTTCGCGCTCGCCCGCGGCCTCGACTTCTCCGTCTCCTCC------AGCGCCGGGGTCGTGACCTTCCCGGCGCGCGACCGC------------------------------------------------------------------GACGGGACCGCCGTGCTG---------------------------GAGCGCGCCAGCCAGCGGCGCCAGGGCGTCGACGCGGTCGGCGCGACGGAGCCCTTCGCCATGACGCTCGAGACGGCGCACGGGCTGCTGACGCTGCTGCAGCGGCTGCGGGCCGGGAACGCCGAG..................------CTCACGTTCAACTTTTTCACGACGCCGCGGCAGGCGCCCCTGTTCAGCGTGACCACCTGCGGCCCGGTGCGGGCGACCACCTTCTTC
TRN  11011111101111111
NAM  VPAP_HHV11/176-313
ASQ  VQLRLTRPQLTKVLNATGA-DSATPTTFELGVNGKFSVFTT--STCVTFAAREEGVSS-----------------STSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVDDCS-MRAVLRRLQVGGG-......---TLKFFLTT-PVPSLCVTATGPNAVSAVF
DSQ  GTTCAGTTGCGCCTGACGAGGCCGCAGCTCACCAAGGTCCTTAACGCGACCGGGGCC---GATAGTGCCACGCCCACCACGTTCGAGCTCGGGGTTAACGGCAAATTTTCCGTGTTCACCACG------AGTACCTGCGTCACCTTTGCTGCCCGCGAGGAGGGCGTGTCGTCC---------------------------------------------------AGCACCAGCACCCAGGTCCAGATCCTGTCCAACGCGCTCACCAAGGCGGGCCAGGCGGCCGCCAACGCCAAGACGGTGTACGGGGAAAATACCCATCGCACCTTCTCTGTGGTCGTCGACGATTGCAGC---ATGCGGGCGGTGCTCCGGCGACTGCAGGTCGGCGGGGGC---..................---------ACCCTCAAGTTCTTCCTCACGACC---CCCGTCCCCAGTCTGTGCGTCACCGCCACCGGTCCCAACGCGGTATCGGCGGTATTT
TRN  10010101100011011
NAM  VPAP_VZVD/174-311
ASQ  ISICLKRDQFTRLQRLLKTFG--FTTCFILTATDMYI--QTAGGGFISFNVSLDINGSKP------TPYNLIRSITNSKRIL---------------NNVVYGSGSMREFGVLLETHSGFRSAVQNLKLTRDE......-TCYINFYLALTNSPMVGLYIQRSAPVHSFF
DSQ  ATAAGCATTTGCTTAAAACGCGATCAATTCACCCGTTTACAGCGACTACTTAAAACTTTTGGG------TTTACAACATGCTTCATTCTAACAGCCACGGATATGTACATC------CAGACCGCCGGGGGTGGTTTTATCTCATTTAATGTTTCCTTGGATATAAACGGAAGCAAGCCT------------------ACACCATATAATTTAATACGCTCAATCACAAATTCAAAAAGGATCCTT---------------------------------------------AATAATGTTGTTTATGGCAGCGGGAGTATGCGTGAATTTGGAGTATTATTGGAAACACACAGTGGATTCCGTTCTGCCGTACAAAATCTTAAGTTAACACGGGATGAG..................---ACGTGTTATATTAATTTTTATCTCGCCTTAACTAACTCCCCCATGGTTGGATTGTATATCCAACGTTCCGCACCCGTGCATTCTTTTTTT
TRN  10010101110011000
NAM  O89240_9ALPH/26-159
ASQ  WKVVLAGEKFRTVSAAVRAIVDSVKNPLIIFSDDGLMIQGTICGQQTFVPIECAAFSEFEWR----GSAAIFLALTDSRRTLLDAFKCDKK-KAI-------------EVSFTFRGEPPSRHLTQTVTYVTDN......------------GSFSSAIIKYELWCASVLF
DSQ  TGGAAAGTCGTCTTGGCCGGAGAGAAATTTAGAACGGTATCGGCTGCAGTACGCGCAATAGTAGATTCTGTGAAGAATCCCCTAATCATATTCAGCGACGACGGATTAATGATACAGGGCACGATTTGCGGTCAGCAAACATTCGTTCCTATCGAGTGCGCCGCCTTTAGTGAATTTGAATGGCGC------------GGGTCCGCGGCCATATTCCTGGCGCTAACAGATTCGAGGCGTACTTTATTAGACGCGTTTAAATGCGACAAGAAA---AAAGCAATC---------------------------------------GAGGTCTCCTTTACGTTCCGAGGGGAACCGCCGTCGCGACATCTAACCCAGACAGTCACGTATGTAACTGATAAC..................------------------------------------GGATCGTTCTCGAGTGCTATCATCAAGTATGAACTGTGGTGCGCCTCAGTTTTATTC
TRN  10010101100011000
NAM  VPAP_HHV11/31-169
ASQ  CQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRWR----GPTAAFLSLVDQKRSLLSVFRANQY-PDLR------------RVELAITGQAPFRTLVQRIWTTTSD......--------GEAVELASETLMKRELTSFVVLV
DSQ  TGCCAGGTGGTCCTGCAGGGCGCCGAACTTAATGGAATCCTACAGGCGTTTGCCCCGCTGCGCACGAGCCTTCTGGACTCGCTTCTGGTTATGGGCGACCGGGGCATCCTTATCCATAACACGATCTTTGGGGAGCAGGTGTTCCTGCCCCTGGAACACTCGCAATTCAGTCGGTATCGCTGGCGC------------GGACCCACGGCGGCGTTCCTGTCTCTCGTGGACCAGAAGCGCTCCCTCCTGAGCGTGTTTCGCGCCAACCAGTAC---CCGGACCTACGT------------------------------------CGGGTGGAGTTGGCGATCACGGGCCAGGCCCCGTTTCGCACGCTGGTTCAGCGCATATGGACGACGACGTCCGAC..................------------------------GGCGAGGCCGTTGAGCTAGCCAGCGAGACGCTGATGAAGCGCGAACTGACGAGCTTTGTGGTGCTGGTT
TRN  10010111100111011
NAM  Q65823_9ALPH/31-169
ASQ  ASASLIGRQLADVSALLSPFGASLRNAFLVFSREGMLVHSGLYDEQVYVAVPAEKFTSFQWAPARDDARAVFLANVDSRRGLLDAFRADKT-RTVQ------------NVAFLITGEPPASVLTQVTYFREAD......------------ALLQASLVKHELGEYSIML
DSQ  GCGAGCGCCTCGCTTATCGGCCGCCAGCTGGCGGACGTCTCCGCCCTGCTGAGCCCCTTTGGCGCCTCGCTGCGAAACGCCTTTTTGGTCTTTAGCCGCGAGGGCATGCTGGTACACAGCGGCCTCTACGACGAGCAAGTGTACGTGGCCGTCCCCGCCGAGAAGTTCACGTCCTTCCAGTGGGCCCCCGCCCGCGACGACGCGCGAGCCGTCTTCCTCGCCAACGTCGACAGCCGCCGCGGCCTGCTGGACGCCTTCCGCGCCGACAAGACA---CGGACAGTGCAG------------------------------------AACGTGGCCTTTCTAATCACCGGTGAGCCACCCGCGAGCGTGCTAACGCAAGTTACCTACTTTCGGGAGGCCGAT..................------------------------------------GCCCTATTGCAGGCCAGCCTGGTCAAGCACGAGCTAGGCGAGTACTCAATCATGCTT
TRN  11011111101111101
NAM  VPAP_PRVKA/42-183
ASQ  GMLVLSDEHLEHARAAIAPLAAHLAHAFLVFSEAGLLVHASVRGEQVYVTLAPDQFSTFVWS----GPQAVFLGNVDGSGGVLDALKVDRR-RTVF------------NVTFEVYGAFPARLLTRRAYFAD--......AGVLA---TGPGSPSVACVYKHEFNDYCIML
DSQ  GGCATGCTGGTGCTCAGCGACGAGCACCTGGAGCACGCGCGCGCCGCCATCGCCCCGCTGGCCGCGCACCTCGCGCACGCCTTCCTCGTCTTCAGCGAGGCCGGGCTGCTGGTGCACGCCAGCGTGCGCGGCGAGCAGGTCTACGTGACCCTGGCCCCGGACCAGTTCAGCACGTTCGTGTGGAGC------------GGGCCCCAGGCCGTGTTCCTGGGCAACGTCGACGGCAGCGGCGGCGTGCTCGACGCGCTCAAGGTCGACCGGCGG---CGGACCGTCTTC------------------------------------AACGTCACCTTCGAGGTGTACGGCGCCTTCCCGGCGCGGCTGCTGACGCGGCGCGCGTACTTTGCGGAC------..................GCGGGCGTCCTCGCG---------ACGGGGCCCGGCTCCCCGAGCGTCGCCTGCGTCTACAAGCACGAGTTCAACGACTACTGCATCATGCTC
TRN  11011111101111111
NAM  VPAP_EHV1B/34-184
ASQ  AMAVFERESLRDAFEMLTPIAPSLKNAFLIFNEDGLLIHTSVGGEQVYIPIQTNNMESYSWK---KAPPAVFLANVDGRRGLLDAFKAKTQ-TNVS------------KVVFEIENYSPSRILTQTVFSARDQteedteMGSDAE---GATQTVSSRLVKHEFNNYALML
NAM  VPAP_VZVD/25-167
ASQ  ARAVLTEKTLTGLISSISPLVNRLRDSILIFSDEGLIIHCSLETEQLYIPIPANMFDQYNWT----GPRMVVLAATEGRSSLIDAFRHTKDPSTPT------------RLYFKFTGQPPERSIIQTMVWQRPG......-----DCGPDDQVQCYKQVVKRELACYTMMF
DSQ  GCCAGAGCTGTTTTAACGGAAAAAACGCTTACTGGTTTAATTTCGTCTATATCACCTCTGGTTAATAGACTAAGGGATTCTATTTTAATATTCAGCGACGAAGGATTAATTATTCACTGTAGTTTGGAAACAGAACAACTGTATATTCCTATACCGGCAAATATGTTTGACCAGTATAATTGGACT------------GGGCCGAGAATGGTTGTACTCGCGGCAACGGAGGGACGGTCCTCGCTTATTGACGCGTTTCGCCATACAAAAGATCCGTCGACCCCAACA------------------------------------CGGTTATATTTTAAATTTACCGGACAACCCCCCGAGCGGAGTATTATCCAAACGATGGTATGGCAACGCCCGGGT..................---------------GATTGTGGTCCAGATGATCAAGTACAATGTTACAAACAAGTTGTAAAACGTGAACTCGCTTGTTATACAATGATGTTT
TRN  10010101100011000
//