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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF01688 - Herpes_gI)
FAM  PF01688
PID  Herpes_gI
DES  Alphaherpesvirus glycoprotein I
IPR  IPR002874
ANO  13
ALN  408
AID  0.219304
APH  (VGLI_CHV9D/7-336:0.74816,((((Q66931_FHV1/2-363:0.63639,(VGLI_EHV1D/5-389:0.57090,O41525_9ALPH/14-344:0.59215):0.16314):0.21632,((VGLI_PRVRI/9-350:1.08031,((VGLI_HHV23/3-352:0.16077,VGLI_HHV11/3-368:0.20322):0.36780,Q69370_9ALPH/2-382:0.35548):0.96822):0.28929,VGLI_BHV1S/3-361:0.91186):0.38771):0.16901,(Q88524_MEHV1/8-337:0.54567,Q69287_MEHV1/1-333:0.80798):0.85889):0.18532,Q67645_9ALPH/2-340:1.46866):0.34744,VGLI_VZVD/4-337:0.77001);
ATP  (VGLI_CHV9D/7-336,((((Q66931_FHV1/2-363,(VGLI_EHV1D/5-389,O41525_9ALPH/14-344)),((VGLI_PRVRI/9-350,((VGLI_HHV23/3-352,VGLI_HHV11/3-368),Q69370_9ALPH/2-382)),VGLI_BHV1S/3-361)),(Q88524_MEHV1/8-337,Q69287_MEHV1/1-333)),Q67645_9ALPH/2-340),VGLI_VZVD/4-337);
ATL  12.8047
DNO  12
DLN  1224
DID  0.355071
DPH  (((Q66931_FHV1/2-363:0.53557,O41525_9ALPH/14-344:0.40505):0.09639,(VGLI_CHV9D/7-336:0.40947,VGLI_VZVD/4-337:0.50939):0.30904):0.12523,(Q69287_MEHV1/1-333:0.46637,Q88524_MEHV1/8-337:0.41981):0.32262,(Q67645_9ALPH/2-340:0.56615,((Q69370_9ALPH/2-382:0.20419,(VGLI_HHV11/3-368:0.16534,VGLI_HHV23/3-352:0.12386):0.24489):0.36617,(VGLI_BHV1S/3-361:0.54408,VGLI_PRVRI/9-350:0.54131):0.10537):0.54651):0.50658);
DTP  (((Q66931_FHV1/2-363,O41525_9ALPH/14-344),(VGLI_CHV9D/7-336,VGLI_VZVD/4-337)),(Q69287_MEHV1/1-333,Q88524_MEHV1/8-337),(Q67645_9ALPH/2-340,((Q69370_9ALPH/2-382,(VGLI_HHV11/3-368,VGLI_HHV23/3-352)),(VGLI_BHV1S/3-361,VGLI_PRVRI/9-350))));
DTL  7.5447
RID  0.216797
RPH  ((((Q69287_MEHV1/1-333:0.82631,Q88524_MEHV1/8-337:0.52215):0.83394,(Q66931_FHV1/2-363:0.68585,O41525_9ALPH/14-344:0.65109):0.21229):0.08557,(Q67645_9ALPH/2-340:1.53292,(VGLI_CHV9D/7-336:0.75123,VGLI_VZVD/4-337:0.75262):0.29439):0.28884):0.41927,VGLI_BHV1S/3-361:0.89152,((Q69370_9ALPH/2-382:0.33261,(VGLI_HHV11/3-368:0.20280,VGLI_HHV23/3-352:0.16006):0.38726):0.94235,VGLI_PRVRI/9-350:1.10580):0.30903);
RTP  ((((Q69287_MEHV1/1-333,Q88524_MEHV1/8-337),(Q66931_FHV1/2-363,O41525_9ALPH/14-344)),(Q67645_9ALPH/2-340,(VGLI_CHV9D/7-336,VGLI_VZVD/4-337))),VGLI_BHV1S/3-361,((Q69370_9ALPH/2-382,(VGLI_HHV11/3-368,VGLI_HHV23/3-352)),VGLI_PRVRI/9-350));
RTL  12.1879
LNK  O41525_9ALPH/14-344:O41525:U84223
LNK  Q66931_FHV1/2-363:Q66931:X98448
LNK  Q67645_9ALPH/2-340:Q67645:U28832
LNK  Q69287_MEHV1/1-333:Q69287:L22174
LNK  Q69370_9ALPH/2-382:Q69370:AF449714
LNK  Q88524_MEHV1/8-337:Q88524:X68653
LNK  VGLI_BHV1S/3-361:Q08102:Z23068
LNK  VGLI_CHV9D/7-336:Q04547:L07067
LNK  VGLI_EHV1D/5-389:P68329:
LNK  VGLI_HHV11/3-368:P06487:L00036
LNK  VGLI_HHV23/3-352:P06764:M14886
LNK  VGLI_PRVRI/9-350:P07646:M14336
LNK  VGLI_VZVD/4-337:P09258:X04370
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  VGLI_VZVD/4-337
ASQ  IQCLISAVIFYIQVT----NALIFKGDHVSLQVNSSLTS-ILIPMQ.NDNYTEIKGQLVFIGEQLPTGTNYSGTLELLYADTV.AFCFRSVQVIRYDGCPRIRTSAFISCRYKHSWHYGNSTDRISTEPDAGVMLKITKPGINDAGVYVLLVRLDH.SRSTDGFILGVNVYTAGS----HHNIHG-..VIYTSP----------SLQNGYSTRAL----FQQARLCDLPATPKG---.SGTSLFQHMLDLRAGKSLEDNP-----------------WLHEDVVTTETKSVVKEGIENHVYPTDMSTLPEK--........--SLNDPPENLLIIIPIVASVMI-.-LTAMVIVIVISVKRRRIKKHPIY---RPNTKTRRGIQNAT------PESDVMLEAAIAQLA
DSQ  ATCCAATGTTTGATATCGGCCGTTATATTTTACATACAAGTGACC------------AACGCTTTGATCTTCAAGGGCGACCACGTGAGCTTGCAAGTTAACAGCAGTCTCACGTCT---ATCCTTATTCCCATGCAA...AATGATAATTATACAGAGATAAAAGGACAGCTTGTCTTTATTGGAGAGCAACTACCTACCGGGACAAACTATAGCGGAACACTGGAACTGTTATACGCGGATACGGTG...GCGTTTTGTTTCCGGTCAGTACAAGTAATAAGATACGACGGATGTCCCCGGATTAGAACGAGCGCTTTTATTTCGTGTAGGTACAAACATTCGTGGCATTATGGTAACTCAACGGATCGGATATCAACAGAGCCGGATGCTGGTGTAATGTTGAAAATTACCAAACCGGGAATAAATGATGCTGGTGTGTATGTACTTCTTGTTCGGTTAGACCAT...AGCAGATCCACCGATGGTTTCATTCTTGGTGTAAATGTATATACAGCGGGCTCG------------CATCACAACATTCACGGG---......GTTATCTACACTTCTCCG------------------------------TCTCTACAGAATGGATATTCTACAAGAGCCCTT------------TTTCAACAAGCTCGTTTGTGTGATTTACCCGCGACACCCAAAGGG---------...TCCGGTACCTCCCTGTTTCAACATATGCTTGATCTTCGTGCCGGTAAATCGTTAGAGGATAACCCT---------------------------------------------------TGGTTACATGAGGACGTTGTTACGACAGAAACTAAGTCCGTTGTTAAGGAGGGGATAGAAAATCACGTATATCCAACGGATATGTCCACGTTACCCGAAAAG------........................------TCCCTTAATGATCCTCCAGAAAATCTACTTATAATTATTCCTATAGTAGCGTCTGTCATGATC---...---CTCACCGCCATGGTTATTGTTATTGTAATAAGCGTTAAGCGACGTAGAATTAAAAAACATCCAATTTAT---------CGCCCAAATACAAAAACAAGAAGGGGCATACAAAATGCGACA------------------CCAGAATCCGATGTGATGTTGGAGGCCGCCATTGCACAACTAGCA
TRN  10010101100011000
NAM  VGLI_CHV9D/7-336
ASQ  TASIMRYLMVFMLFGIQCAAAIIYRGNYISLYVNSSATSIFLKG--.NNNDASIRGRFLFIGDQFPVTNTYNVTVELLHVNQT.TLCLQPLYRVMYGECPRIRTGAIIACRVKRSWH--YENATQLTDPNVEIIFKMNNTKVEDAGIYLLVVQLDY.TSLFDIFFVSLNVY--------PKQDTS-..NEDVNY-----------FPPVYSPS----HILNTFKICHKFPVHNG---.MEQSILQHIVTSDVDTETENLS--------------------WQKDDLGSTQKPRKNFN-PDVKVNVTHETRK--........-TLMESSADVFMIAVPITASLLV-.--ILAIIIVVTVGIYRRRSSEKRKIYRPKRTKEQASTEKRE-----RSESDVLLEAAVARLE
DSQ  ACAGCATCTATAATGAGGTATTTAATGGTGTTTATGTTATTTGGTATACAGTGCGCCGCGGCAATTATTTATAGGGGGAACTATATAAGCTTGTATGTTAATAGTAGCGCGACTTCCATATTTCTAAAGGGG------...AATAACAATGATGCATCTATCCGAGGACGTTTTTTATTTATTGGTGACCAGTTCCCCGTAACAAATACTTACAATGTAACCGTTGAACTTTTACATGTTAACCAAACC...ACGTTGTGTTTACAACCCTTATACCGTGTTATGTATGGTGAATGTCCACGTATTCGCACTGGTGCAATTATTGCATGTCGTGTTAAACGATCATGGCAT------TATGAAAATGCAACACAGTTAACTGACCCAAATGTAGAAATTATATTTAAAATGAATAATACAAAAGTGGAAGACGCTGGAATATATTTGCTTGTTGTTCAACTGGACTAT...ACCTCACTGTTTGACATTTTTTTTGTCTCATTAAATGTATAT------------------------CCAAAGCAAGATACTAGT---......AATGAAGACGTTAATTAC---------------------------------TTTCCGCCTGTATATTCTCCGAGT------------CATATTTTAAACACTTTCAAAATCTGCCATAAATTTCCAGTACATAATGGT---------...ATGGAACAGTCTATCTTGCAGCACATTGTTACGTCTGATGTGGATACAGAAACGGAAAATTTAAGT------------------------------------------------------------TGGCAGAAAGATGATTTGGGTTCAACACAAAAACCGAGAAAAAACTTTAAC---CCCGATGTCAAAGTAAACGTTACGCACGAAACAAGAAAA------........................---ACTCTTATGGAATCATCCGCAGATGTATTTATGATTGCTGTTCCTATAACAGCATCATTGCTTGTT---...------ATTCTAGCTATAATTATTGTTGTTACCGTTGGTATATATAGAAGACGTAGTTCAGAGAAGCGGAAAATTTATCGTCCCAAACGTACTAAAGAACAAGCATCTACTGAAAAACGGGAA---------------CGATCTGAGTCGGACGTTCTGCTAGAGGCTGCGGTTGCGCGCTTAGAA
TRN  10010101100011000
NAM  VGLI_PRVRI/9-350
ASQ  TRLPAGLLLAALTLA---ALTPRVGGVLFRGAGVSVHVAGSAVLVPgDAPNLTIDGTLLFLEGPSPSN--YSGRVELLRLDPK.RACYTREYAAEYDLCPRVHHEAFRGCLRKR----EPLARRASAAVEARRLLFVSRPAPPDAGSYVLRVRVNG.TTDLFVLTALVPPR---GRPHHPTPSSA-..-DECRP--VVG--SWHDSLRVVDPAED---AVFTTPPPIEPEPPTT---.PAPPRGTGATPEPRSDEEEEDEEG------ATT------AMTPVPGTLDANGTMVLNAS-VVSRVLLAAANAT--........-AGARGPGKIAMVLGPTIVVLLI-.-FLG--GVACAARRCARGIASTGR---DPGAARRSTRRPRG----ARPPTPSPGRP-SPSPR
DSQ  ACCCGGCTCCCCGCGGGGCTCCTCCTCGCCGCCCTGACCCTGGCC---------GCCCTGACCCCGCGCGTCGGGGGCGTCCTCTTCAGGGGCGCCGGCGTCAGCGTGCACGTCGCCGGGAGCGCCGTCCTCGTGCCCggcGACGCGCCCAACCTGACGATCGACGGGACGCTGCTGTTTCTGGAGGGGCCCTCGCCGAGCAAC------TACAGCGGGCGCGTGGAGCTGCTGCGCCTCGACCCCAAG...CGCGCCTGCTACACGCGCGAGTACGCCGCCGAGTACGACCTCTGCCCCCGCGTGCACCACGAGGCCTTCCGCGGCTGTCTGCGCAAGCGC------------GAGCCGCTCGCCCGGCGCGCGTCCGCCGCGGTGGAGGCGCGCCGGCTGCTGTTCGTCTCGCGCCCGGCCCCGCCGGACGCGGGGTCGTACGTGCTGCGGGTCCGCGTGAACGGG...ACCACGGACCTCTTTGTGCTGACGGCCCTGGTGCCGCCCAGG---------GGGCGCCCCCACCACCCCACGCCGTCGTCCGCG---......---GACGAGTGCCGGCCT------GTCGTCGGA------TCGTGGCACGACAGCCTGCGCGTCGTGGACCCCGCCGAGGAC---------GCCGTGTTCACCACGCCGCCCCCGATCGAGCCAGAGCCGCCGACGACC---------...CCCGCGCCCCCCCGGGGGACCGGCGCCACCCCCGAGCCCCGCTCCGACGAAGAGGAGGAGGACGAGGAGGGG------------------GCGACGACG------------------GCGATGACCCCGGTGCCCGGGACCCTGGACGCGAACGGCACGATGGTGCTGAACGCCAGC---GTCGTGTCGCGCGTCCTGCTCGCCGCCGCCAACGCCACG------........................---GCGGGCGCCCGGGGCCCCGGGAAGATAGCCATGGTGCTGGGGCCCACGATCGTCGTCCTCCTGATC---...---TTCTTGGGC------GGGGTCGCCTGCGCGGCCCGGCGCTGCGCGCGCGGAATCGCATCTACCGGCCGC---------GACCCGGGCGCGGCCCGGCGGTCCACGCGCCGCCCCCGCGGC------------GCCCGCCCCCCAACCCCGTCGCCGGGGCGCCCG---TCCCCCAGCCCAAGA
TRN  10010101100011011
NAM  VGLI_BHV1S/3-361
ASQ  CLLLWMVVLAARAAP---ARSLVYRGEAVGLRADGPVAF-AVHP--.TDATLALRGRLIFLEHQLPAGRRYNGTVELLRYHAA.GDCFVMLQTTAFASCPRVANNAFRSCLHADTRP-ARSERRASAAVENHVLFSIARPRPIDSGLYFLRVGIYG.GTAGSERRRDVFPL-AAFVHSFGEPGDPE..AAARTP--APSRQSRPAASGLTSSASL-YDRALARSPQAPPPRPAP---.PRAARAGPRRPERVDETTEVEAATRAGSAFALT-------TPPAGPTASPAASPSRAFS-AAAPAAAAQPAGD--........-TPARFRRQLASILVPLCVLVLL-.-LLALCAATVNCALRRRLLPCSRR---VYKPRTCAACGSGTCA--GRPPCRGAAP--SAPAT
DSQ  TGCCTGTTGCTCTGGATGGTGGTGCTGGCCGCGCGAGCGGCGCCC---------GCTCGCAGCCTTGTGTATCGCGGCGAGGCAGTCGGCCTGCGCGCGGACGGCCCCGTAGCGTTC---GCTGTCCACCCG------...ACCGACGCAACGCTCGCGCTGCGGGGCCGGCTGATTTTCCTGGAACACCAGCTCCCGGCCGGGCGGCGCTACAACGGGACCGTCGAGCTGCTGCGCTACCACGCCGCG...GGCGACTGCTTCGTTATGCTGCAGACGACCGCGTTCGCCTCCTGCCCGCGCGTCGCGAACAACGCCTTTCGCTCCTGCCTGCACGCCGACACGCGCCCC---GCTCGCAGCGAGCGGCGCGCGAGCGCCGCGGTCGAAAACCACGTGCTCTTCTCCATCGCCCGTCCGCGCCCAATAGACTCGGGGCTCTACTTTCTGCGCGTCGGCATCTACGGC...GGCACCGCGGGCAGCGAGCGCCGCCGAGACGTCTTTCCCTTG---GCCGCGTTTGTACACAGCTTCGGTGAGCCCGGAGACCCAGAG......GCCGCGGCGCGCACCCCG------GCACCGTCGAGGCAGTCGAGGCCCGCTGCGAGCGGCCTGACCAGCTCGGCGAGCCTC---TACGACCGCGCGCTGGCGCGTTCCCCGCAGGCGCCGCCACCACGCCCGGCCCCA---------...CCGCGAGCAGCGAGAGCGGGGCCGCGACGCCCAGAGAGGGTCGACGAGACGACGGAAGTCGAGGCCGCGACGAGAGCGGGCTCGGCGTTTGCCCTCACC---------------------ACGCCCCCGGCCGGCCCGACCGCCAGCCCCGCCGCCAGCCCCTCCCGTGCCTTTAGC---GCGGCCGCCCCGGCCGCCGCTGCGCAGCCGGCCGGAGAC------........................---ACGCCCGCTCGCTTCCGGCGCCAACTGGCGTCGATCCTAGTGCCTCTGTGCGTGCTGGTGCTGCTG---...---CTGCTTGCGCTCTGCGCCGCGACGGTAAACTGCGCGCTGCGCCGTCGCCTGCTGCCGTGCTCTCGGCGC---------GTTTACAAGCCGCGGACGTGCGCGGCGTGCGGGAGCGGCACTTGCGCG------GGGCGGCCCCCCTGCCGCGGCGCGGCACCG------AGCGCCCCAGCCACC
TRN  10010101100011011
NAM  VGLI_EHV1D/5-389
ASQ  TGMFSAAILLSMAIC---STAIIYRGEHMSMYLNASSEF-AVYP--.TDQSLVLVGHLLFLDGQRLPTTNYSGLIELIHYNYS.SVCYTVIQTISYESCPRVANNAFRSCLHKTSKH-YHDYFRVNASVETNVLLNITKPQPTDSGAYILRVKLDH.APTADVFGVSAFVYDLKS-KTVPDPMPT-..TQTVEPTTSYVSTPTYDYTDDVTTETE-STSTSTQQAMTSTQTPSATWG.TQLTTELPTNETVVIGQEALLCHWFQPSTRVPTLYLHLLGRTGNLPEDVLLVEDSEFLR-TTSPAHRPSASPADGddfkqtnsTSLKARNKIVAMVVIPTACVLML-.-LLVVVGAIINGAVRKHLLSCASRRIYRSGQGGASAAERRRLT--CGPTLAASSES-LADDT
NAM  O41525_9ALPH/14-344
ASQ  TRLLITMFLPILFLFLYGVNGFVYKGTYISMFLNTSSGF-SIFP--.-DDKFIVSGRLLFLDDQHLSVNNYSGTIEFIHFN--.NSCYTVYQTIEYFSCPRIFNNAFRSCLKKVSKH-HESQLRINSSIENGVLLEITNPKPNDSGVYFIRVQLE-.NNKTDVFGIPAFIY--------SFNMSN-..--EVNK---------SNFDDVTTSLY------TSSHPSSQTITPIY---.-LNEKHEPICHTVKKDENVYEL--------LLG-------LHGNITDDIFLDEDSELLKRVNIPTTTNNYIFKP-........-YLDQRNRKFLIIVISISIILLI-.-LLVLIGSIINNIIR-RHFSSSRR---IYRPKGNSESENIELT-CGENSVNKNNPLPKKPNR
DSQ  ACCAGATTACTTATAACTATGTTTCTACCTATTTTATTTCTTTTTTTATATGGTGTAAATGGATTTGTTTACAAAGGTACGTATATAAGTATGTTTTTAAATACTAGTTCTGGCTTT---TCTATTTTTCCC------...---GATGATAAATTTATTGTCAGTGGACGTTTATTATTTCTCGATGACCAACATCTGTCAGTAAATAATTATAGCGGAACTATTGAGTTTATTCATTTTAAT------...AACTCTTGTTATACCGTTTATCAAACTATTGAATATTTTTCTTGTCCTCGCATTTTTAATAATGCTTTTAGATCTTGTTTAAAAAAGGTATCAAAACAT---CATGAAAGTCAACTTCGGATAAATTCATCTATAGAAAACGGTGTTTTGTTGGAAATTACAAATCCTAAACCAAATGATTCAGGTGTTTATTTTATACGAGTTCAATTGGAA---...AATAATAAAACAGATGTGTTTGGAATACCTGCATTTATTTAT------------------------TCCTTTAATATGTCAAAC---......------GAAGTAAATAAA---------------------------TCAAACTTCGATGATGTTACTACATCTTTATAT------------------ACCTCATCACACCCTTCTTCCCAAACTATTACACCTATCTAT---------...---TTAAATGAAAAACACGAACCGATATGTCATACTGTAAAAAAGGATGAAAATGTGTATGAACTT------------------------TTACTAGGT---------------------TTGCATGGAAATATAACTGATGATATTTTTCTCGATGAGGATTCTGAATTGCTTAAAAGAGTAAATATACCTACAACGACAAATAATTATATATTTAAGCCT---........................---TACCTAGACCAACGTAATAGAAAATTTTTAATTATTGTAATTTCGATTTCGATAATTTTACTTATT---...---CTTTTGGTATTAATTGGATCAATTATTAACAATATTATTCGT---AGACACTTTTCTTCTTCTAGGCGT---------ATTTATCGTCCTAAAGGTAACTCGGAATCTGAAAATATAGAACTGACA---TGTGGGGAAAACTCAGTAAACAAAAATAATCCATTACCAAAAAAACCTAACCGC
TRN  10010101100011000
NAM  Q66931_FHV1/2-363
ASQ  SSIAFIYILMAIGT----VYGIVYRGDHVSLHVDTSSGF-VIYP--.TLENFTIYGHLIFLDDQPLPVNNYNGTLEIIHYNHH.SSCYKIVQVIEYSSCPRVRNNAFRSCLHKTSMH-QYDQLSINTSVETGMLLTITSPKMEDGGIYALRVRFNH.NNKADVFGLSVFVY---SFDTRGHRHHA-..DENLNGEILTTPSPMETYVKVNTPIYDHMVTTQTTSNKSMESEPSN---.--TSISCHTFQNDPNEGETLYTHLLN----IAG------NITYDDMVMDGTTLKPRLID-MGLNLSVTSSFKNET........TQKWTPDRKVGFVIVISIAVLLL-.--LAVIGSIINSAIRKHIMVCAGRRIYIPNNDGRPSTEMTRFTRQTKPSNSSSKSLLDVPRS
DSQ  TCGTCGATAGCCTTCATCTATATATTGATGGCGATTGGAACA------------GTTTATGGGATTGTGTATCGTGGAGATCATGTAAGTCTTCATGTTGATACAAGCTCCGGCTTT---GTAATATATCCA------...ACACTGGAGAATTTTACGATCTACGGCCATCTAATCTTTCTCGACGACCAACCATTACCAGTAAACAATTATAATGGAACCCTCGAGATTATACATTACAACCATCAC...TCTTCTTGCTATAAAATCGTTCAAGTAATAGAATATTCATCATGTCCACGTGTACGCAATAATGCTTTCCGGTCCTGTCTCCACAAGACCTCTATGCAC---CAATACGATCAGCTTTCCATAAACACATCCGTTGAAACGGGGATGTTATTGACAATAACATCTCCGAAAATGGAAGATGGTGGAATCTACGCACTGCGGGTAAGATTTAACCAT...AATAACAAAGCTGATGTATTTGGCCTTTCGGTGTTTGTTTAC---------TCATTCGATACGCGTGGTCATCGACATCATGCG---......GACGAAAATTTGAATGGTGAAATTCTTACTACTCCATCACCGATGGAAACATATGTTAAAGTTAACACACCAATATATGATCATATGGTGACAACTCAAACAACTTCTAATAAATCGATGGAGTCCGAACCATCAAAT---------...------ACATCAATATCATGCCATACATTTCAAAATGACCCGAATGAGGGTGAGACTTTATATACACACTTATTGAAC------------ATCGCTGGA------------------AATATAACATATGATGACATGGTTATGGATGGCACCACATTGAAACCCAGATTAATCGAT---ATGGGACTTAACTTGTCTGTTACATCTTCCTTTAAAAATGAAACC........................ACGCAAAAATGGACACCAGACAGAAAGGTGGGTTTTGTTATAGTAATCTCAATCGCAGTTTTACTACTC---...------CTTGCGGTCATCGGATCCATCATCAATAGTGCAATACGCAAGCATATAATGGTCTGTGCTGGGCGGCGGATCTATATACCAAACAACGATGGGCGACCATCAACGGAAATGACACGGTTTACTCGCCAGACTAAACCATCGAATTCGAGTTCCAAGTCCCTACTCGATGTCCCCAGATCT
TRN  10010101100011000
NAM  VGLI_HHV23/3-352
ASQ  GRSLQGLAILGLWVC---ATGLVVRGPTVSLVSDSLVDAGAVGPQGfVEEDLRVFGELHFVGAQVPHTNYYDGIIELFHYPLG.NHCPRVVHVVTLTACPRRPAVAFTLCRSTHHAH-SPAYPTLELGLARQPLLRVRTATRDYAGLYVLRVWVGS.ATNASLFVLGVALS-ANG--TFVYNGSD-..YGSCDPAQLPFSAPRLGPSSVYTPG-----ASRPTPPRTTTS-PSS---.PRDPTPAPGDTGTPAPASGER---------APP------NSTRSASESRHRLTVAQVIQ-IAIPASIIAFVFLG-........-SCICFIHRCQRRYRRPRGQIYN-.-PGG-VSCAVNEAAMARLGAELRS---HPNTPPKPRRRSSSST--TMPSLTSIAEE-SEPGP
DSQ  GGCCGCTCGCTGCAGGGCCTGGCGATCCTGGGCCTGTGGGTCTGC---------GCCACCGGCCTGGTCGTCCGCGGCCCCACGGTCAGTCTGGTCTCAGACTCACTCGTGGATGCCGGGGCCGTGGGGCCCCAGGGCttcGTGGAAGAGGACCTGCGTGTTTTCGGGGAGCTTCATTTTGTGGGGGCCCAGGTCCCCCACACAAACTACTACGACGGCATCATCGAGCTGTTTCACTACCCCCTGGGG...AACCACTGCCCCCGCGTTGTACACGTGGTCACACTGACCGCATGCCCCCGCCGCCCCGCCGTGGCGTTCACCTTGTGTCGCTCGACGCACCACGCCCAC---AGCCCCGCCTATCCGACCCTGGAGCTGGGTCTGGCGCGGCAGCCGCTTCTGCGGGTTCGAACGGCAACGCGCGACTATGCCGGTCTGTATGTCCTGCGCGTATGGGTCGGCAGC...GCGACGAACGCCAGCCTGTTTGTTTTGGGGGTGGCGCTCTCT---GCCAACGGG------ACGTTTGTGTATAACGGCTCGGAC---......TACGGCTCCTGCGATCCGGCGCAGCTTCCCTTTTCGGCCCCGCGCCTGGGACCCTCGAGCGTATACACCCCCGGA---------------GCCTCCCGGCCCACCCCTCCACGGACAACGACATCC---CCGTCCTCC---------...CCCCGAGACCCGACCCCCGCCCCCGGGGACACAGGGACGCCCGCGCCCGCGAGCGGCGAGAGA---------------------------GCCCCGCCC------------------AATTCCACGCGATCGGCCAGCGAATCGAGACACAGGCTAACCGTAGCCCAGGTAATCCAG---ATCGCCATACCGGCGTCCATCATCGCCTTTGTGTTTCTGGGC---........................---AGCTGTATCTGCTTCATCCATAGATGCCAGCGCCGATACAGGCGCCCCCGCGGCCAGATTTACAAC---...---CCCGGGGGC---GTTTCCTGCGCGGTCAACGAGGCGGCCATGGCCCGCCTCGGAGCCGAGCTGCGATCC---------CACCCAAACACCCCCCCCAAACCCCGACGCCGTTCGTCGTCGTCCACG------ACCATGCCTTCCCTAACGTCGATAGCTGAGGAA---TCGGAGCCAGGTCCA
TRN  10010101100011001
NAM  VGLI_HHV11/3-368
ASQ  CRPLQGLVLVGLWVC---ATSLVVRGPTVSLVSNSFVDAGALGPDGvVEEDLLILGELRFVGDQVPHTTYYDGGVELWHYPMG.HKCPRVVHVVTVTACPRRPAVAFALCRATDSTH-SPAYPTLELNLAQQPLLRVQRATRDYAGVYVLRVWVGD.APNASLFVLGMAIA-AEG--TLAYNGSA-..YGSCDPKLLPSSAPRLAPASVYQPA-----PNQASTPSTTTSTPSTTIPaPSTTIPAPQASTTPFPTGDPKPQPPGV-NHEPPS-----NATRATRDSRYALTVTQIIQ-IAIPASIIALVFLG-........-SCICFIHRCQRRYRRSRRPIYSPqMPTG-ISCAVNEAAMARLGAELKS---HPSTPPKSRRRSSR-T--PMPSLTAIAEE-SEPAG
DSQ  TGCCGCCCGTTGCAGGGCCTGGTGCTCGTGGGCCTCTGGGTCTGT---------GCCACCAGCCTGGTTGTCCGTGGCCCCACGGTCAGTCTGGTATCAAACTCATTTGTGGACGCCGGGGCCTTGGGGCCCGACGGCgtaGTGGAGGAAGACCTGCTTATTCTCGGGGAGCTTCGCTTTGTGGGGGACCAGGTCCCCCACACCACCTACTACGATGGGGGCGTAGAGCTGTGGCACTACCCCATGGGA...CACAAATGCCCACGGGTCGTGCATGTCGTCACGGTGACCGCGTGCCCACGTCGCCCCGCCGTGGCATTCGCCCTGTGTCGCGCGACCGACAGCACTCAC---AGCCCCGCATATCCCACCCTGGAGCTCAATCTGGCCCAACAGCCGCTTTTGCGGGTCCAGAGGGCAACGCGGGACTATGCCGGGGTGTACGTGTTACGCGTATGGGTCGGTGAC...GCGCCAAACGCCAGCCTGTTTGTCCTGGGGATGGCCATAGCC---GCCGAAGGG------ACTCTGGCGTACAACGGCTCGGCC---......TATGGCTCCTGCGACCCGAAACTGCTTCCGTCTTCGGCCCCGCGTCTGGCCCCGGCGAGCGTATACCAACCCGCC---------------CCTAACCAGGCCTCCACCCCCTCGACCACCACCTCCACCCCCTCGACCACCATCCCCgctCCCTCGACCACCATCCCCGCTCCCCAAGCATCGACCACGCCCTTCCCCACGGGAGATCCAAAACCACAACCTCCCGGGGTC---AACCACGAACCCCCATCT---------------AATGCCACGCGAGCGACCCGCGACTCGCGATACGCGCTAACGGTGACCCAGATAATCCAG---ATAGCCATCCCCGCGTCCATCATAGCCCTGGTGTTTCTGGGG---........................---AGCTGTATTTGCTTTATACACAGATGTCAACGCCGCTACCGACGCTCCCGTCGCCCGATTTACAGCCCCcagATGCCCACGGGC---ATCTCATGCGCGGTGAACGAAGCGGCCATGGCCCGCCTCGGAGCCGAGCTCAAATCG---------CATCCGAGCACCCCCCCCAAATCCCGGCGCCGGTCGTCACGC---ACG------CCAATGCCCTCCCTGACGGCCATCGCCGAAGAG---TCGGAGCCCGCTGGG
TRN  10010101100011000
NAM  Q69370_9ALPH/2-382
ASQ  GRLLGFLLASALWAR---SRVVVVRGPTISLVSDSLLAAGPVGPDGrLPGDLEVPGEFHFLGPQVPRVAYYDGAVELFHYPPV.DRCPRVVLVEELTACPRRHAVAFALCRSTRRTQ-SPAYANLTLDLARRPLLRARGFADAVVGLYVARVWVEG.ATNASLFPLDLAAFPAEGRPTEPPPGGETpvDARCDP-DAPLRAPRLGPADVFVPATP-IPPARTAEPPEATPPPARTAE.PPEATPPPVSPNPATPEAAEVGETEETPDPATPGGGRATSASPAPEASRYELTATRIVQ-IAIPALIIACVALG-........-SCSCCLGRRCRRRRPHPARIYRPpSPVAPSISAVNEAALARLGDELKR---PPESPRRAKRRPSQ-T--AVPSLTAISEE-SEAPA
DSQ  GGGCGCCTGCTGGGGTTTCTGCTCGCGTCGGCCCTGTGGGCCCGC---------TCGCGGGTTGTGGTGGTTCGCGGTCCGACGATCAGCCTCGTGTCGGACTCCCTCCTGGCCGCGGGGCCCGTCGGGCCGGACGGGcgcCTTCCTGGGGACCTGGAGGTTCCGGGGGAGTTTCACTTCCTGGGTCCCCAGGTTCCGCGCGTCGCGTACTACGACGGGGCGGTGGAGCTGTTCCACTACCCGCCGGTC...GACCGCTGCCCCCGCGTGGTCCTCGTCGAGGAGCTGACGGCGTGCCCCCGCCGCCACGCCGTCGCCTTCGCCCTGTGCCGCTCGACCCGCAGGACCCAG---AGCCCCGCCTACGCCAACCTGACCCTGGACCTGGCCCGCCGGCCCCTCCTGCGGGCCCGCGGCTTCGCGGACGCCGTCGTCGGCCTGTACGTCGCCCGGGTGTGGGTCGAGGGG...GCGACGAACGCCAGCCTGTTTCCCCTGGACCTGGCGGCGTTTCCCGCGGAGGGCCGCCCGACCGAGCCCCCCCCCGGCGGCGAGACGccggtcGACGCGCGATGCGACCCG---GACGCGCCGCTGCGGGCCCCGCGCCTGGGGCCGGCCGACGTGTTCGTCCCCGCGACGCCG---ATCCCGCCCGCCCGGACCGCCGAGCCCCCGGAAGCGACTCCCCCGCCCGCCCGGACCGCCGAG...CCCCCGGAAGCGACTCCCCCGCCGGTCTCCCCCAACCCCGCGACCCCCGAGGCGGCGGAGGTCGGGGAGACCGAAGAGACCCCCGACCCCGCGACCCCCGGCGGGGGTCGGGCGACGAGCGCCTCCCCGGCGCCCGAGGCCTCCCGGTACGAGCTGACGGCCACGCGGATAGTGCAG---ATCGCCATCCCGGCGCTGATAATCGCTTGCGTGGCCCTGGGG---........................---AGCTGCTCCTGCTGCCTCGGTCGGCGGTGTCGTCGGCGCCGGCCGCACCCGGCCCGCATCTACCGCCCCcccTCGCCGGTCGCCCCGAGCATCTCGGCCGTGAACGAGGCGGCCCTGGCGCGCCTGGGCGACGAGCTGAAACGA---------CCCCCGGAGTCGCCCCGTCGGGCCAAGCGGCGCCCGTCGCAG---ACC------GCGGTGCCGTCGCTGACCGCGATCTCGGAGGAG---TCCGAGGCCCCCGCG
TRN  10010101100011011
NAM  Q88524_MEHV1/8-337
ASQ  CMVCVTLILFCIIIK---TQCMVYRGSLVSTTVDQSAQI-AFFG--.IDTVVNLYGKVLFMGDQYLEEI-YSGTMEILKWNQA.NRCYSIAHATYYADCPIISSTVFRGCRDAVVY--TRPHSRIHPQYRNGLLLTIIEPRMEDSGIYYIRTSIDG.FNKSDYARTSIFVC----------NGSS-..-GSCSN----------PRQKVSDEMCIPHVNRIAFERYLTLHVGRLP--.YGDLTLQQIRKDMTTTAPTYRT---------IR------RTTVNEGLLTAKTSPDIDLNATNLPLPISNYTDY--........--MSVIWRRVALRRIYAYLVIAI-.--IALLIVTVCSAHKRGSCSRRRR---IYIGNEPTTLTSIT----NGNFQEKETKN-VPSDI
DSQ  TGCATGGTATGTGTGACTCTAATATTATTCTGTATCATAATAAAA---------ACACAGTGCATGGTATATAGAGGATCGCTGGTAAGCACTACGGTAGACCAATCGGCTCAGATT---GCATTCTTTGGC------...ATCGATACCGTTGTTAATTTATATGGCAAAGTCTTGTTCATGGGAGATCAGTATTTGGAGGAAATA---TACTCTGGAACGATGGAAATACTCAAATGGAATCAAGCT...AACCGCTGCTATTCTATTGCGCATGCAACATATTACGCCGACTGTCCTATAATCAGTTCTACGGTATTCAGAGGATGCCGGGACGCCGTTGTTTAT------ACTAGGCCCCACAGCAGAATTCATCCCCAATATCGAAACGGGCTGCTTTTGACTATTATCGAGCCACGGATGGAGGATTCTGGTATCTATTATATACGCACTTCAATAGATGGT...TTTAACAAGAGCGATTATGCGAGAACATCTATTTTTGTATGT------------------------------AATGGGTCGTCT---......---GGATCGTGTTCTAAC------------------------------CCCCGCCAAAAAGTTTCAGATGAAATGTGCATCCCCCACGTAAATCGTATTGCATTTGAGCGATATTTAACCCTACATGTTGGACGGTTGCCC------...TACGGAGACTTGACATTACAGCAGATACGTAAGGACATGACGACCACCGCTCCTACATATCGTACC---------------------------ATTCGC------------------AGAACTACAGTTAATGAGGGTTTGTTGACAGCCAAGACATCCCCTGATATCGATTTAAATGCAACAAATTTGCCCCTACCCATTAGTAACTACACAGATTAT------........................------ATGAGTGTTATTTGGAGACGTGTTGCCTTAAGACGAATTTATGCTTATTTGGTGATCGCTATT---...------ATAGCATTGTTGATAGTAACAGTCTGCTCCGCACATAAAAGAGGCAGTTGTAGTCGTCGACGTAGA---------ATCTACATAGGCAATGAACCTACTACATTGACTTCGATCACT------------AACGGAAATTTCCAAGAAAAGGAGACCAAGAAT---GTACCGTCCGACATC
TRN  10010101100011000
NAM  Q69287_MEHV1/1-333
ASQ  MYVLQLLFWIRLFRG---IWSIVYTGTSVTLSTDQSALV-AFRG--.LDKMVNVRGQLLFLGDQTRTSS-YTGTTEILKWDEE.YKCYSVLHATSYMDCPAIDATVFRGCRDAVVY--AQPHGRVQPFPEKGTLLRIVEPRVSDTGSYYIRVSLAG.RNMSDIFRMVVIIR----------SSKS-..-WACNH----------SASSFQAHKCIRYVDRMAFENYLIGHVGNL---.LDSDSELHAIYNITPQSISTDIN----------------IVTTPFYDNSGTIYSPTVFNLFNNNSHVDAMNSTG-........-MWNTVLKYTLPRLIYFSTMIVL-.----CIIALAIYLVCERCRSPHRR---IYIGEPRSDEAPLITSAVNESFQYDYNVKETPSDV
DSQ  ATGTATGTACTACAATTATTATTTTGGATCCGCCTCTTTCGAGGC---------ATCTGGTCTATAGTTTATACTGGAACATCTGTTACGTTATCAACGGACCAATCTGCTCTTGTT---GCGTTCCGCGGA------...TTAGATAAAATGGTGAATGTACGCGGCCAACTTTTATTCCTGGGCGACCAGACTCGGACCAGTTCT---TATACAGGAACGACGGAAATCTTGAAATGGGATGAAGAA...TATAAATGCTATTCCGTTCTACATGCGACATCATATATGGATTGTCCTGCTATAGACGCCACGGTATTCAGAGGCTGTAGAGACGCTGTGGTATAT------GCTCAACCTCATGGTAGAGTACAACCTTTTCCCGAAAAGGGAACATTGTTGAGAATTGTCGAACCCAGAGTATCAGATACAGGCAGCTATTACATACGTGTATCTCTCGCTGGA...AGAAATATGAGCGATATATTTAGAATGGTTGTTATTATAAGG------------------------------AGTAGCAAATCT---......---TGGGCCTGTAATCAC------------------------------TCTGCTAGTTCATTTCAGGCCCATAAATGTATTCGCTATGTCGACCGTATGGCCTTTGAAAATTATCTGATTGGACATGTAGGCAATTTG---------...CTGGACAGTGACTCGGAATTGCATGCAATTTATAATATTACTCCCCAATCCATTTCCACAGATATTAAT------------------------------------------------ATTGTAACGACTCCATTTTACGATAATTCGGGAACAATTTATTCACCTACGGTTTTTAATTTGTTTAATAACAATTCCCATGTCGATGCAATGAATTCGACTGGT---........................---ATGTGGAATACCGTTTTAAAATATACCCTTCCAAGGCTTATTTACTTTTCTACGATGATTGTACTA---...------------TGTATAATAGCATTGGCAATTTATTTGGTCTGTGAAAGGTGCCGCTCTCCCCATCGTAGG---------ATATACATCGGTGAACCAAGATCTGATGAGGCCCCACTCATCACTTCTGCAGTTAACGAATCATTTCAATATGATTATAATGTAAAGGAAACTCCTTCAGATGTT
TRN  10010101100011000
NAM  Q67645_9ALPH/2-340
ASQ  ASLLGTLALLAATLAPFGAMGIVITGNHVSARIDDDHIV-IVAP--.-RPEATIQLQLFFMPGQRPHKP-YSGTVRVAFRSDItNQCYQELSEERFENCTHRSSSVFVGCKVTEY---TFSASNRLTGPPHPFKLTIRNPRPNDSGMFYVIVRLDDtKEPIDVFAIQLSVYQFAN-TAATRGLYS-..KASCRT----FGLPTVQLEAYLRTEES--WRNWQAYVATEATTTSA---.-EATTPTPVTATSASELEAEHFT-----------------FPWLENGVDHYEPTPANEN-SNVTVRLGTMSPT--........-----LIGVTVAAVVSATIGLVI-.---VISIVTRNMCTPHRKLDTVSQ---DDEERSQTRRESRK----FGPMVACEINKGADQDS
DSQ  GCATCGCTACTTGGAACTCTGGCTCTCCTTGCCGCGACGCTCGCACCCTTCGGCGCGATGGGAATCGTGATCACTGGAAATCACGTCTCCGCCAGGATTGACGACGATCACATCGTG---ATCGTCGCGCCT------...---CGCCCCGAAGCTACAATTCAACTGCAGCTATTTTTCATGCCTGGCCAGAGACCCCACAAACCC---TACTCAGGAACCGTCCGCGTCGCGTTTCGGTCTGATATAacaAACCAGTGCTACCAGGAACTTAGCGAGGAGCGCTTTGAAAATTGCACTCATCGATCGTCTTCTGTTTTTGTCGGCTGTAAAGTGACCGAGTAC---------ACGTTCTCCGCCTCGAACAGACTAACCGGACCTCCACACCCGTTTAAGCTCACTATACGAAATCCTCGTCCGAACGACAGCGGGATGTTCTACGTAATTGTTCGGCTAGACGACaccAAAGAACCCATTGACGTCTTCGCGATCCAACTATCGGTGTATCAATTCGCGAAC---ACCGCCGCGACTCGCGGACTCTATTCC---......AAGGCTTCGTGTCGCACC------------TTCGGATTACCTACCGTCCAACTTGAGGCCTATCTCAGGACCGAGGAAAGT------TGGCGCAACTGGCAAGCGTACGTTGCCACGGAGGCCACGACGACCAGCGCC---------...---GAGGCGACAACCCCGACGCCCGTCACTGCAACCAGCGCCTCCGAACTTGAAGCGGAACACTTTACC---------------------------------------------------TTTCCCTGGCTAGAAAATGGCGTGGATCATTACGAACCGACACCCGCAAACGAAAAT---TCAAACGTTACTGTCCGTCTCGGGACAATGAGCCCTACG------........................---------------CTAATTGGGGTAACCGTGGCTGCCGTCGTGAGCGCAACGATCGGCCTCGTCATT---...---------GTAATTTCCATCGTCACCAGAAACATGTGCACCCCGCACCGAAAATTAGACACGGTCTCGCAA---------GACGACGAAGAACGTTCCCAAACTAGAAGGGAATCGCGAAAA------------TTTGGACCCATGGTTGCGTGCGAAATAAACAAGGGGGCTGACCAGGATAGT
TRN  10010101100011000
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