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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF00867 - XPG_I)
FAM  PF00867
PID  XPG_I
DES  XPG I-region
IPR  IPR006086
ANO  16
ALN  120
AID  0.353388
APH  ((((((YAGG_SCHPO/286-379:1.13469,(FEN1_HUMAN/146-237:0.19127,(RAD27_YEAST/144-235:0.16109,RAD2_SCHPO/147-238:0.21022):0.17139):0.10357):0.27914,(FEN_ARCFU/139-239:0.28219,(FEN_METTH/140-230:0.23980,FEN_METJA/140-228:0.23398):0.06418):0.23667):0.46059,((RAD13_SCHPO/765-853:0.23007,(XPG_MOUSE/776-864:0.44560,RAD2_YEAST/780-868:0.27522):0.09714):0.30090,Q22418_CAEEL/121-216:0.89602):0.18257):0.06286,YEN1_YEAST/181-292:0.79806):0.44205,(EXO1_SCHPO/138-229:0.13970,Q24557_DROME/138-230:0.89651):0.25637):0.29286,DIN7_YEAST/138-231:0.22579,EXO1_YEAST/138-231:0.21902);
ATP  ((((((YAGG_SCHPO/286-379,(FEN1_HUMAN/146-237,(RAD27_YEAST/144-235,RAD2_SCHPO/147-238))),(FEN_ARCFU/139-239,(FEN_METTH/140-230,FEN_METJA/140-228))),((RAD13_SCHPO/765-853,(XPG_MOUSE/776-864,RAD2_YEAST/780-868)),Q22418_CAEEL/121-216)),YEN1_YEAST/181-292),(EXO1_SCHPO/138-229,Q24557_DROME/138-230)),DIN7_YEAST/138-231,EXO1_YEAST/138-231);
ATL  9.57468
DNO  15
DLN  360
DID  0.452664
DPH  (((((YEN1_YEAST/181-292:0.66465,(XPG_MOUSE/776-864:0.38480,(RAD13_SCHPO/765-853:0.26507,RAD2_YEAST/780-868:0.24326):0.08536):0.15154):0.11127,YAGG_SCHPO/286-379:0.69412):0.02114,(((FEN_ARCFU/139-239:0.24932,FEN_METJA/140-228:0.38409):0.03972,FEN_METTH/140-230:0.30145):0.14002,(FEN1_HUMAN/146-237:0.22363,(RAD27_YEAST/144-235:0.25556,RAD2_SCHPO/147-238:0.28318):0.11441):0.22817):0.22235):0.19345,(EXO1_SCHPO/138-229:0.26560,Q24557_DROME/138-230:0.62326):0.11895):0.17231,DIN7_YEAST/138-231:0.27147,EXO1_YEAST/138-231:0.23254);
DTP  (((((YEN1_YEAST/181-292,(XPG_MOUSE/776-864,(RAD13_SCHPO/765-853,RAD2_YEAST/780-868))),YAGG_SCHPO/286-379),(((FEN_ARCFU/139-239,FEN_METJA/140-228),FEN_METTH/140-230),(FEN1_HUMAN/146-237,(RAD27_YEAST/144-235,RAD2_SCHPO/147-238)))),(EXO1_SCHPO/138-229,Q24557_DROME/138-230)),DIN7_YEAST/138-231,EXO1_YEAST/138-231);
DTL  6.94316
RID  0.360414
RPH  (((((XPG_MOUSE/776-864:0.36572,(RAD13_SCHPO/765-853:0.30162,RAD2_YEAST/780-868:0.27388):0.10948):0.37808,((YAGG_SCHPO/286-379:1.11504,(FEN1_HUMAN/146-237:0.17111,(RAD27_YEAST/144-235:0.16823,RAD2_SCHPO/147-238:0.20496):0.19130):0.11475):0.26056,((FEN_METTH/140-230:0.24868,FEN_METJA/140-228:0.23178):0.06465,FEN_ARCFU/139-239:0.27597):0.25469):0.42722):0.10380,YEN1_YEAST/181-292:0.89266):0.40509,(EXO1_SCHPO/138-229:0.14206,Q24557_DROME/138-230:0.89779):0.24237):0.30565,DIN7_YEAST/138-231:0.24136,EXO1_YEAST/138-231:0.20464);
RTP  (((((XPG_MOUSE/776-864,(RAD13_SCHPO/765-853,RAD2_YEAST/780-868)),((YAGG_SCHPO/286-379,(FEN1_HUMAN/146-237,(RAD27_YEAST/144-235,RAD2_SCHPO/147-238))),((FEN_METTH/140-230,FEN_METJA/140-228),FEN_ARCFU/139-239))),YEN1_YEAST/181-292),(EXO1_SCHPO/138-229,Q24557_DROME/138-230)),DIN7_YEAST/138-231,EXO1_YEAST/138-231);
RTL  8.59313
LNK  DIN7_YEAST/138-231:Q12086:X90707
LNK  EXO1_SCHPO/138-229:P53695:L35174
LNK  EXO1_YEAST/138-231:P39875:X87331
LNK  FEN1_HUMAN/146-237:P39748:X76771
LNK  FEN_ARCFU/139-239:O29975:AE001087
LNK  FEN_METJA/140-228:Q58839:U67585
LNK  FEN_METTH/140-230:O27670:AE000922
LNK  Q22418_CAEEL/121-216:Q22418:
LNK  Q24557_DROME/138-230:Q24557:X89021
LNK  RAD13_SCHPO/765-853:P28706:X66795
LNK  RAD27_YEAST/144-235:P26793:S93804
LNK  RAD2_SCHPO/147-238:P39750:X77041
LNK  RAD2_YEAST/780-868:P07276:M10275
LNK  XPG_MOUSE/776-864:P35689:D16306
LNK  YAGG_SCHPO/286-379:Q09708:Z50728
LNK  YEN1_YEAST/181-292:P40028:U18796
AMK  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  YAGG_SCHPO/286-379
ASQ  KILGIPASFSPIgVEAEAFASAISQNNLAYAVATQDTDVLLLGSSMISNF-.--LDLNDN---..............--FHLPLQIMDPRKIAQELNL---TFDGFQDYCLMCGTDFTSR
DSQ  AAAATATTAGGGATACCTGCTTCATTCTCTCCTATCggaGTAGAAGCTGAAGCATTTGCCTCAGCTATTTCTCAAAACAACCTGGCATATGCAGTTGCTACTCAAGATACTGATGTCTTACTGTTGGGTTCTTCAATGATATCTAACTTT---...------CTTGACTTAAATGATAAT---------..........................................------TTTCATCTACCGTTGCAAATTATGGATCCTAGAAAAATTGCTCAAGAATTGAACTTA---------ACATTTGATGGATTTCAAGATTACTGTTTGATGTGCGGAACAGATTTCACATCTCGA
TRN  10010101100011000
NAM  RAD2_SCHPO/147-238
ASQ  ELMGIPFVNAPC.-EAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRH-.--LTFSEQR--..............---KEPISEYNIEKALNGLDM---SVEQFVDLCILLGCDYCEP
DSQ  GAGTTAATGGGAATTCCCTTCGTTAACGCACCCTGT...---GAAGCAGAAGCTCAATGTGCCGCTTTAGCCCGTTCAGGAAAAGTTTATGCTGCTGCTTCTGAGGACATGGACACATTGTGCTTCCAAGCTCCTGTACTTTTGAGACAC---...------CTGACATTTAGTGAGCAAAGA------..........................................---------AAGGAACCAATTAGTGAGTATAACATAGAAAAAGCATTGAATGGTTTAGATATG---------TCGGTGGAGCAGTTTGTAGACTTGTGTATTCTTTTGGGTTGTGACTATTGTGAACCT
TRN  10010101100011000
NAM  RAD27_YEAST/144-235
ASQ  GLMGIPYIIAPT.-EAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRH-.--LTFSEAK--..............---KEPIHEIDTELVLRGLDL---TIEQFVDLCIMLGCDYCES
DSQ  GGACTAATGGGAATCCCATATATAATAGCGCCAACG...---GAAGCTGAGGCTCAATGTGCTGAGTTGGCAAAGAAGGGAAAGGTGTATGCCGCAGCAAGTGAAGATATGGACACACTCTGTTATAGAACACCCTTCTTGTTGAGACAT---...------TTGACTTTTTCAGAGGCCAAG------..........................................---------AAGGAACCGATTCACGAAATAGATACTGAATTAGTTTTGAGAGGACTCGACTTG---------ACAATAGAGCAGTTTGTTGATCTTTGCATAATGCTTGGTTGTGACTACTGTGAAAGC
TRN  10010101110011000
NAM  FEN1_HUMAN/146-237
ASQ  SLMGIPYLDAPS.-EAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRH-.--LTASEAK--..............---KLPIQEFHLSRILQELGL---NQEQFVDLCILLGSDYCES
DSQ  AGCCTCATGGGCATCCCTTATCTTGATGCACCCAGT...---GAGGCAGAGGCCAGCTGTGCTGCCCTGGTGAAGGCTGGCAAAGTCTATGCTGCGGCTACCGAGGACATGGACTGCCTCACCTTCGGCAGCCCTGTGCTAATGCGACAC---...------CTGACTGCCAGTGAAGCCAAA------..........................................---------AAGCTGCCAATCCAGGAATTCCACCTGAGCCGGATTCTGCAGGAGCTGGGCCTG---------AACCAGGAACAGTTTGTGGATCTGTGCATCCTGCTAGGCAGTGACTACTGTGAGAGT
TRN  11011101101011011
NAM  FEN_METJA/140-228
ASQ  SLMGIPYVEAPS.-EGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRN-.--LTTT-----..............---KEMPELIELNEVLEDLRI---SLDDLIDIAIFMGTDYNPG
DSQ  AGTTTGATGGGCATTCCGTATGTTGAAGCTCCCTCT...---GAGGGAGAGGCACAAGCAAGCTATATGGCAAAGAAGGGAGATGTTTGGGCAGTTGTAAGTCAAGATTATGATGCCTTGTTATATGGAGCTCCGAGAGTTGTTAGAAAT---...------TTAACAACTACA---------------..........................................---------AAGGAGATGCCAGAACTTATTGAATTAAATGAGGTTTTAGAGGATTTAAGAATT---------TCTTTGGATGATTTGATAGATATAGCCATATTTATGGGAACTGACTATAATCCAGGA
TRN  10010101110011010
NAM  FEN_METTH/140-230
ASQ  ELLGIPYVQAPG.-EGEAQASYMVKMGDAWAVASQDYDCLLFGAPRVVRN-.--LTLSGK---..............---LEDPEIIELESTLRELSI---SHTQLVDMALLVGTDFNEG
DSQ  GAACTTCTGGGAATACCCTATGTACAGGCACCCGGT...---GAGGGGGAGGCTCAGGCATCATACATGGTTAAGATGGGCGATGCATGGGCCGTGGCATCCCAGGACTATGACTGTCTCCTCTTTGGCGCCCCAAGGGTTGTAAGGAAC---...------CTCACCCTCAGCGGAAAA---------..........................................---------CTTGAGGACCCCGAGATCATTGAACTGGAGTCCACCCTCAGGGAACTCTCAATC---------AGCCACACACAGCTCGTGGATATGGCACTACTCGTCGGGACTGACTTCAATGAGGGT
TRN  10010101100011001
NAM  FEN_ARCFU/139-239
ASQ  SYMGIPFVDAPS.-EGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARN-.--LAITGKRKLpg..........knVYVDVKPEIIILESNLKRLGL---TREQLIDIAILVGTDYNEG
DSQ  AGTTACATGGGGATTCCCTTTGTCGATGCCCCGTCT...---GAAGGAGAGGCGCAGGCTGCTTACATGGCAGCAAAAGGCGATGTGGAGTACACAGGAAGCCAGGATTACGATTCTCTGCTCTTCGGAAGCCCGAGACTCGCCAGAAAT---...------CTCGCAATAACGGGAAAAAGGAAGCTTcccggc..............................aaaaatGTCTATGTGGATGTAAAGCCGGAGATAATAATTCTGGAAAGCAACCTCAAAAGGCTGGGTTTG---------ACGAGGGAGCAGCTCATCGACATAGCGATTCTGGTCGGGACGGACTACAATGAGGGT
TRN  10010101100011011
NAM  RAD2_YEAST/780-868
ASQ  SRFGIPYITAPM.-EAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKN-.--MFHEKN---..............---YVEFYDAE--SILKLLGL---DRKNMIELAQLLGSDYTNG
DSQ  TCGAGGTTTGGAATCCCCTATATCACTGCGCCTATG...---GAAGCTGAAGCACAGTGTGCGGAATTGTTACAACTAAACCTTGTCGATGGTATAATTACCGATGACAGTGATGTTTTCCTATTTGGAGGTACAAAGATCTACAAAAAT---...------ATGTTCCACGAAAAGAAC---------..........................................---------TATGTTGAATTTTATGATGCGGAA------TCTATTTTAAAATTATTGGGCTTG---------GATAGAAAGAATATGATTGAGTTGGCACAGCTTTTAGGGAGCGATTACACGAATGGA
TRN  10010101110011010
NAM  RAD13_SCHPO/765-853
ASQ  RLFGLPYIVAPQ.-EAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRN-.--MFNQNK---..............---FVELYLMD--DMKREFNV---NQMDLIKLAHLLGSDYTMG
DSQ  CGTTTATTTGGCTTACCATATATCGTTGCTCCTCAA...---GAAGCAGAAGCCCAGTGTTCTAAACTTTTGGAGCTAAAGCTGGTTGATGGGATTGTTACTGATGACTCAGACGTGTTTCTTTTTGGTGGAACTCGGGTATATCGAAAT---...------ATGTTTAATCAGAACAAA---------..........................................---------TTTGTCGAACTCTATTTAATGGAT------GATATGAAAAGAGAATTTAATGTG---------AATCAAATGGATTTAATTAAGTTGGCACATCTTTTGGGAAGTGATTATACTATGGGA
TRN  10010101100011000
NAM  XPG_MOUSE/776-864
ASQ  RLFGVPYIQAPM.-EAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKN-.--FFNKNK---..............---FVEYYQYV--DFYSQLGL---DRNKLINLAYLLGSDYTEG
DSQ  CGCCTGTTTGGCGTTCCCTACATCCAGGCTCCCATG...---GAGGCAGAGGCACAGTGTGCCATGTTGGACCTCTCTGATCAGACTTCTGGAACGATTACTGACGATAGTGATATCTGGCTGTTTGGGGCCCGGCATGTCTATAAGAAT---...------TTTTTTAACAAAAACAAG---------..........................................---------TTTGTAGAGTACTATCAATATGTG------GACTTTTACAGTCAACTAGGACTG---------GACCGTAACAAGCTAATCAACTTGGCCTATCTACTGGGCAGTGACTATACGGAAGGG
TRN  11011101101011011
NAM  Q22418_CAEEL/121-216
ASQ  TELGIKVIIAPG.-DGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYRF-.--DFTAGTSS-..............---TACLHDIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQR
NAM  YEN1_YEAST/181-292
ASQ  DLMNISYVIACG.-EGEAQCVWLQVSGAVDFILSNDSDTLVFGGEKILKNYsKFYDDFGPSSItshspsrhhdskesFVTVIDLPKIN--KVAG----KKFDRLSLLFFSVLLGADYNRG
DSQ  GACTTGATGAACATTTCATATGTAATCGCATGTGGG...---GAGGGAGAAGCCCAGTGTGTTTGGCTGCAAGTTTCTGGGGCTGTAGATTTCATTTTAAGTAACGATTCAGATACTCTCGTATTTGGGGGAGAAAAAATCCTGAAAAATTACtcgAAATTCTACGATGATTTTGGCCCAAGTTCAATAacttcccacagtcccagtagacatcatgatagtaaagaatctTTTGTTACTGTTATAGATCTACCCAAAATTAAT------AAAGTAGCAGGG------------AAGAAGTTTGATCGCCTGTCTCTCTTATTTTTCAGCGTGCTATTAGGTGCCGATTACAATCGTGGA
TRN  10010101100011000
NAM  Q24557_DROME/138-230
ASQ  RSRNVDCIVAPY.-EADAQMAWLNRADVAQYIITEDSDLTLFGAKNIIFK-.--LDLNGSG--..............--LLVEAEKLHLAMGCTEEKY---HFDKFRRMCILSGCDYLDS
DSQ  CGGAGCCGGAATGTTGACTGCATTGTGGCGCCCTAC...---GAGGCCGATGCCCAAATGGCCTGGCTGAATAGAGCAGATGTGGCCCAGTACATCATCACCGAGGACTCGGACTTAACGCTTTTTGGAGCCAAGAACATCATATTCAAG---...------CTGGACCTCAACGGCAGCGGC------..........................................------CTGCTGGTGGAGGCGGAAAAACTTCACCTGGCCATGGGCTGCACGGAGGAGAAGTAC---------CACTTTGACAAGTTCCGGCGCATGTGCATCCTATCCGGCTGTGATTACCTGGACTCA
TRN  10010101100011000
NAM  EXO1_YEAST/138-231
ASQ  KLNGIRYIVAPF.-EADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITK-.--LNDYGE---..............---CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNG
DSQ  AAGCTAAACGGTATTCGGTACATAGTGGCTCCGTTT...---GAGGCTGACTCTCAAATGGTATATTTAGAACAGAAAAACATTGTGCAAGGAATAATATCCGAAGATTCTGACCTCCTCGTCTTCGGATGTCGACGTCTCATTACGAAG---...------CTGAATGATTATGGAGAA---------..........................................---------TGTTTAGAAATATGTCGCGATAATTTTATTAAACTGCCTAAAAAGTTTCCGTTGGGATCCTTAACTAATGAAGAAATCATAACAATGGTTTGTTTATCCGGTTGTGACTATACAAATGGA
TRN  10010101100011010
NAM  DIN7_YEAST/138-231
ASQ  KLHSIPYIVAPF.-EADPQMVYLEKMGLIQGIISEDSDLLVFGCKTLITK-.--LNDQGK---..............---ALEISKDDFSALPENFPLGELSEQQFRNLVCLAGCDYTSG
DSQ  AAACTACATTCAATTCCCTACATTGTTGCACCATTT...---GAAGCAGATCCGCAAATGGTTTACTTGGAAAAAATGGGCCTTATACAGGGTATCATATCAGAAGATTCTGATTTGTTGGTCTTTGGTTGTAAAACACTCATAACAAAG---...------TTAAATGATCAGGGAAAA---------..........................................---------GCTTTAGAAATCTCAAAAGACGATTTTTCAGCTTTACCTGAAAATTTCCCTCTAGGAGAATTAAGTGAACAACAATTTCGTAATCTAGTTTGTTTAGCAGGGTGTGATTACACTAGCGGA
TRN  10010101110011000
NAM  EXO1_SCHPO/138-229
ASQ  REHGIESIVAPY.-EADAQLVYLEKENIIDGIITEDSDMLVFGAQTVLFK-.--MDGFGN---..............---CITIRRND-IANAQDLNL-RLPIEKLRHMAIFSGCDYTDG
DSQ  AGAGAACATGGGATTGAATCAATCGTTGCTCCGTAT...---GAAGCAGATGCTCAACTCGTATATTTGGAGAAGGAAAATATCATTGATGGCATTATTACGGAAGACTCTGATATGCTAGTTTTTGGCGCTCAAACGGTACTATTTAAG---...------ATGGATGGATTTGGGAAT---------..........................................---------TGCATAACTATTAGACGTAATGAC---ATAGCAAACGCACAAGACTTGAATCTC---CGTCTTCCGATTGAAAAACTTCGACATATGGCAATATTTTCCGGATGTGATTACACAGATGGT
TRN  10010101110011001
//