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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04992 phylogeny
for nucleotide alignment


 
((((((((((((((O02450_LIMPO/426-609,Q9BNE0_HADAR/35-218),O02452_MASGI/535-718),Q9NJN3_ARMVU/53-236),(Q9BNK9_9MYRI/35-218,Q9BNL1_9MYRI/35-218)),Q9BNP6_9MYRI/35-218),((Q25203_9CAEN/810-993,(((Q9XZU9_DROSU/888-1071,(Q9XZS1_DROGU/888-1071,Q9XZS2_DROMD/888-1071)),Q9XZU8_DROPS/810-993),RPB1_DROME/888-1071)),(((((RPB1_MOUSE/896-1079,O08847_MOUSE/896-1079),O35559_CRIGR/896-1079),RPB1_HUMAN/896-1079),Q9U5F6_EPTBU/395-578),Q9PTX4_LAMRE/395-578))),((O01370_9BILA/101-284,O01375_9BILA/101-284),(((O01376_9BILA/101-284,RPB1_CAEEL/886-1069),O01364_9BILA/101-284),P90678_9BILA/101-284))),Q9BMP3_MONBE/814-997),((Q99368_SOYBN/83-267,RPB1_ARATH/893-1077),((Q27095_TRIVA/891-1076,Q9HGZ5_ASPOR/893-1076),((RPB1_DICDI/57-250,RPB1_SCHPO/879-1059),RPB1_YEAST/873-1056)))),(O77165_9EUKA/801-995,O00820_ACACA/802-986)),(((Q9BJ59_LEPSE/851-1052,Q9NJG6_LEIEN/46-247),(((O15680_LEITR/43-244,(Q25268_LEIDO/43-244,Q9NJR9_LEIDO/852-1054)),(Q25311_LEIME/43-244,Q25223_LEIAM/43-244)),((O18713_9TRYP/43-244,((O15679_LEITA/43-244,O77439_9TRYP/43-244),O18710_9TRYP/43-244)),(Q25382_9TRYP/43-244,O15678_LEIBR/43-244)))),((Q25290_9TRYP/43-244,O18712_9TRYP/43-244),(Q25291_9TRYP/43-244,O18711_9TRYP/43-244)))),Q26791_9TRYP/875-1076),Q26794_9TRYP/875-1076),RPB1_TRYBB/876-1077,RPB2_TRYBB/876-1077);
((((((((((((((O02450_LIMPO/426-609:0.16224,Q9BNE0_HADAR/35-218:0.10909):0.05373,O02452_MASGI/535-718:0.13848):0.08415,Q9NJN3_ARMVU/53-236:0.29564):0.09427,(Q9BNK9_9MYRI/35-218:0.16333,Q9BNL1_9MYRI/35-218:0.15139):0.05726):0.14500,Q9BNP6_9MYRI/35-218:0.13033):0.10804,((Q25203_9CAEN/810-993:0.27121,(((Q9XZU9_DROSU/888-1071:0.00470,(Q9XZS1_DROGU/888-1071:0.01096,Q9XZS2_DROMD/888-1071:0.00550):0.00076):0.05953,Q9XZU8_DROPS/810-993:0.03602):0.04768,RPB1_DROME/888-1071:0.11083):0.17751):0.05271,(((((RPB1_MOUSE/896-1079:0.00000,O08847_MOUSE/896-1079:0.00000):0.03414,O35559_CRIGR/896-1079:0.03182):0.04819,RPB1_HUMAN/896-1079:0.02545):0.15586,Q9U5F6_EPTBU/395-578:0.19020):0.06713,Q9PTX4_LAMRE/395-578:0.11140):0.15109):0.04562):0.09529,((O01370_9BILA/101-284:0.14652,O01375_9BILA/101-284:0.24617):0.10437,(((O01376_9BILA/101-284:0.18139,RPB1_CAEEL/886-1069:0.15763):0.16172,O01364_9BILA/101-284:0.15574):0.05678,P90678_9BILA/101-284:0.18807):0.05956):0.16019):0.07450,Q9BMP3_MONBE/814-997:0.48580):0.09011,((Q99368_SOYBN/83-267:0.16193,RPB1_ARATH/893-1077:0.18113):0.30007,((Q27095_TRIVA/891-1076:0.53185,Q9HGZ5_ASPOR/893-1076:0.49296):0.10252,((RPB1_DICDI/57-250:0.47012,RPB1_SCHPO/879-1059:0.31539):0.06720,RPB1_YEAST/873-1056:0.41291):0.15172):0.11173):0.07428):0.08266,(O77165_9EUKA/801-995:0.71098,O00820_ACACA/802-986:0.34358):0.09747):0.36962,(((Q9BJ59_LEPSE/851-1052:0.15301,Q9NJG6_LEIEN/46-247:0.05936):0.01627,(((O15680_LEITR/43-244:0.00469,(Q25268_LEIDO/43-244:0.00163,Q9NJR9_LEIDO/852-1054:0.02805):0.00924):0.00980,(Q25311_LEIME/43-244:0.00172,Q25223_LEIAM/43-244:0.00518):0.02463):0.00468,((O18713_9TRYP/43-244:0.00173,((O15679_LEITA/43-244:0.00863,O77439_9TRYP/43-244:0.00690):0.00518,O18710_9TRYP/43-244:0.00343):0.00174):0.04603,(Q25382_9TRYP/43-244:0.00775,O15678_LEIBR/43-244:0.00607):0.03625):0.00408):0.01581):0.01615,((Q25290_9TRYP/43-244:0.03178,O18712_9TRYP/43-244:0.02551):0.07422,(Q25291_9TRYP/43-244:0.00621,O18711_9TRYP/43-244:0.01119):0.05709):0.01806):0.13366):0.29662,Q26791_9TRYP/875-1076:0.00000):0.00000,Q26794_9TRYP/875-1076:0.00000):0.00000,RPB1_TRYBB/876-1077:0.00000,RPB2_TRYBB/876-1077:0.00174);