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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04992 phylogeny
for amino acid alignment


 
(((((((((((((((((((O02452_MASGI/535-718,(O02428_DYSCR/53-236,O02416_APHCH/53-236)),O02450_LIMPO/426-609),Q9BNE5_9ARAC/45-228),Q9BNE0_HADAR/35-218),((Q9BNN8_9MYRI/35-218,((Q9BNJ6_9MYRI/51-234,Q9BNN0_9MYRI/35-218),(Q9NJJ7_9MYRI/547-730,Q9BNP6_9MYRI/35-218))),((Q9BNK9_9MYRI/35-218,Q9BNL1_9MYRI/35-218),Q9NJK2_9MYRI/547-730))),((Q9NJN3_ARMVU/53-236,((((Q9XZU9_DROSU/888-1071,Q9XZS1_DROGU/888-1071),Q9XZS2_DROMD/888-1071),Q9XZU8_DROPS/810-993),RPB1_DROME/888-1071)),(Q9NJJ2_9HEXA/356-539,Q17085_ARTSA/808-991))),((Q9PTX4_LAMRE/395-578,Q9U5F6_EPTBU/395-578),(((RPB1_MOUSE/896-1079,O35559_CRIGR/896-1079),O08847_MOUSE/896-1079),RPB1_HUMAN/896-1079))),(Q25203_9CAEN/810-993,Q23699_CRAGI/807-990)),Q25151_9ANNE/803-986),(P91819_ZELPU/98-281,((((O01376_9BILA/101-284,RPB1_CAEEL/886-1069),P90678_9BILA/101-284),O01364_9BILA/101-284),(O01370_9BILA/101-284,O01375_9BILA/101-284)))),Q9BMP3_MONBE/814-997),((O00820_ACACA/802-986,RPB1_DICDI/57-250),(Q99368_SOYBN/83-267,RPB1_ARATH/893-1077))),((Q9HGZ5_ASPOR/893-1076,RPB1_YEAST/873-1056),RPB1_SCHPO/879-1059)),Q27095_TRIVA/891-1076),O77165_9EUKA/801-995),((O15679_LEITA/43-244,((O77439_9TRYP/43-244,O18713_9TRYP/43-244),O18710_9TRYP/43-244)),(((((((Q25223_LEIAM/43-244,(((Q25290_9TRYP/43-244,O18712_9TRYP/43-244),(Q25291_9TRYP/43-244,O18711_9TRYP/43-244)),((O15678_LEIBR/43-244,Q25382_9TRYP/43-244),Q9GP01_LEIGU/33-232))),Q9NJR9_LEIDO/852-1054),(Q9GNZ5_LEIMA/30-230,(Q9GNX2_9TRYP/31-232,Q9GP03_9TRYP/31-232))),Q25268_LEIDO/43-244),Q25312_LEIMA/853-1054),O15680_LEITR/43-244),((Q9NJG6_LEIEN/46-247,Q9BJ59_LEPSE/851-1052),Q25311_LEIME/43-244)))),RPB1_TRYBB/876-1077),RPB2_TRYBB/876-1077),Q26791_9TRYP/875-1076,Q26794_9TRYP/875-1076);
(((((((((((((((((((O02452_MASGI/535-718:0.05049,(O02428_DYSCR/53-236:0.15963,O02416_APHCH/53-236:0.03623):0.06253):0.02278,O02450_LIMPO/426-609:0.11293):0.01464,Q9BNE5_9ARAC/45-228:0.11707):0.01130,Q9BNE0_HADAR/35-218:0.07544):0.07590,((Q9BNN8_9MYRI/35-218:0.10028,((Q9BNJ6_9MYRI/51-234:0.03034,Q9BNN0_9MYRI/35-218:0.05071):0.03285,(Q9NJJ7_9MYRI/547-730:0.07529,Q9BNP6_9MYRI/35-218:0.04170):0.04172):0.02825):0.03878,((Q9BNK9_9MYRI/35-218:0.11736,Q9BNL1_9MYRI/35-218:0.00959):0.12230,Q9NJK2_9MYRI/547-730:0.09992):0.01096):0.06040):0.03695,((Q9NJN3_ARMVU/53-236:0.27096,((((Q9XZU9_DROSU/888-1071:0.00000,Q9XZS1_DROGU/888-1071:0.00000):0.00000,Q9XZS2_DROMD/888-1071:0.01090):0.03070,Q9XZU8_DROPS/810-993:0.00909):0.03424,RPB1_DROME/888-1071:0.04720):0.16947):0.05204,(Q9NJJ2_9HEXA/356-539:0.11018,Q17085_ARTSA/808-991:0.18183):0.04375):0.09361):0.05745,((Q9PTX4_LAMRE/395-578:0.18336,Q9U5F6_EPTBU/395-578:0.12560):0.04096,(((RPB1_MOUSE/896-1079:0.00000,O35559_CRIGR/896-1079:0.00549):0.00000,O08847_MOUSE/896-1079:0.00000):0.00000,RPB1_HUMAN/896-1079:0.00000):0.14621):0.16588):0.03320,(Q25203_9CAEN/810-993:0.26550,Q23699_CRAGI/807-990:0.15476):0.11487):0.04541,Q25151_9ANNE/803-986:0.30570):0.14301,(P91819_ZELPU/98-281:0.14385,((((O01376_9BILA/101-284:0.08236,RPB1_CAEEL/886-1069:0.10841):0.15916,P90678_9BILA/101-284:0.14949):0.03310,O01364_9BILA/101-284:0.12338):0.04025,(O01370_9BILA/101-284:0.15861,O01375_9BILA/101-284:0.15213):0.08756):0.00606):0.14673):0.17762,Q9BMP3_MONBE/814-997:0.58857):0.20371,((O00820_ACACA/802-986:0.48643,RPB1_DICDI/57-250:0.52072):0.16345,(Q99368_SOYBN/83-267:0.16149,RPB1_ARATH/893-1077:0.17198):0.36907):0.08613):0.12939,((Q9HGZ5_ASPOR/893-1076:0.59423,RPB1_YEAST/873-1056:0.43981):0.14081,RPB1_SCHPO/879-1059:0.41972):0.05283):0.17991,Q27095_TRIVA/891-1076:0.71186):0.06737,O77165_9EUKA/801-995:1.01913):0.73824,((O15679_LEITA/43-244:0.00502,((O77439_9TRYP/43-244:0.00000,O18713_9TRYP/43-244:0.00000):0.00000,O18710_9TRYP/43-244:0.00000):0.00504):0.00985,(((((((Q25223_LEIAM/43-244:0.00000,(((Q25290_9TRYP/43-244:0.00000,O18712_9TRYP/43-244:0.01017):0.04116,(Q25291_9TRYP/43-244:0.00505,O18711_9TRYP/43-244:0.01013):0.01008):0.01023,((O15678_LEIBR/43-244:0.00509,Q25382_9TRYP/43-244:0.00000):0.00000,Q9GP01_LEIGU/33-232:0.01550):0.02043):0.00507):0.00503,Q9NJR9_LEIDO/852-1054:0.03106):0.00000,(Q9GNZ5_LEIMA/30-230:0.01542,(Q9GNX2_9TRYP/31-232:0.00000,Q9GP03_9TRYP/31-232:0.00000):0.00000):0.01017):0.00000,Q25268_LEIDO/43-244:0.00000):0.00000,Q25312_LEIMA/853-1054:0.00000):0.00000,O15680_LEITR/43-244:0.00000):0.00503,((Q9NJG6_LEIEN/46-247:0.06321,Q9BJ59_LEPSE/851-1052:0.12115):0.00994,Q25311_LEIME/43-244:0.00503):0.00000):0.00529):0.13975):0.23612,RPB1_TRYBB/876-1077:0.00000):0.00000,RPB2_TRYBB/876-1077:0.00000):0.00000,Q26791_9TRYP/875-1076:0.00000,Q26794_9TRYP/875-1076:0.00000);