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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF04963 - Sigma54_CBD)
Sigma-54 factor, core binding domain
(Pfam reference: accession no. PF04963)
(Interpro reference: accession no. IPR007046)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
22 sequences @ 206 aa
(ave. pairwise identity: 0.39)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 10.82)
nucleotides
(available for above)
22 sequences @ 618 bp
(ave. pairwise identity: 0.49)
New Hampshire format
(total tree length: 8.05)
amino acids, restricted set
(corresp. to available nt seqs)
22 sequences @ 206 aa
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 10.82)