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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04879 phylogeny
for nucleotide alignment


 
(((((((((((NARB_SYNY3/7-68,(Q9R6U4_SYNP2/3-60,((Q9EYN5_SYNPW/25-91,Q9RA37_9CYAN/1-67),((NARB_SYNP7/16-82,Q44289_ANASP/2-68),Q51328_9CYAN/2-68)))),NARB_SHEFR/1-62),(((FDNG_ECOLI/43-104,O67146_AQUAE/46-107),Q9PMF2_CAMJE/50-104),(((((Q98HH7_RHILO/1-52,Q9AAI1_CAUCR/8-63),NASA_KLEOX/1-55),Q9I2W3_PSEAE/7-61),Q9KJ87_PSEPU/3-57),(Q9EYG2_AMYMD/1-49,Q9L2E6_STRCO/11-63)))),((Q9V0J3_PYRAB/5-55,(((((NASC_BACSU/19-75,Q9KF71_BACHD/18-76),Q9UYM9_PYRAB/3-58),(FDHF_ECOLI/1-54,(((Y006_METJA/1-55,Q50514_METTF/1-56),(Q9C4B5_METVO/4-58,(Q9HM26_THEAC/34-85,Q97CU9_THEVO/1-52))),(FDHA_METFO/3-57,Q50569_METTF/3-57)))),(((Q99RW4_STAAN/257-311,(O05397_BACSU/265-319,Q9HL15_THEAC/277-331)),Q9WX89_CLOPE/1-55),Q97ZA1_SULSO/1-55)),O27595_METTH/197-251)),(((Q9ZBV9_STRCO/230-284,NUOG2_RHIME/217-271),(((Q9EZD3_RHIME/248-302,O87815_ALCEU/243-297),Q98BW9_RHILO/260-314),NUOG_PSEAE/221-275)),P77908_MOOTH/221-275))),((Q9I0C8_PSEAE/6-60,Q9L212_STRCO/4-58),(((Q9PPD9_CAMJE/35-89,NAPA_ECOLI/39-93),(NAPA_PARPN/41-95,(NAPA_ALCEU/41-95,Q9I4G3_PSEAE/36-90))),NAPA_DESDE/38-91))),((Q98BE3_RHILO/40-92,O67280_AQUAE/44-98),((O30286_ARCFU/39-93,Q97XX8_SULSO/63-121),(PHSA_SALTY/41-95,PSRA_WOLSU/44-98)))),(O30061_ARCFU/39-96,(YYAE_BACSU/2-57,O34323_BACSU/11-64))),O29065_ARCFU/38-91),Q9HR74_HALN1/53-108),Q9X6B6_YERPE/65-125),DMSA_HAEIN/47-107,YNFE_ECOLI/49-108);
(((((((((((NARB_SYNY3/7-68:0.19321,(Q9R6U4_SYNP2/3-60:0.22947,((Q9EYN5_SYNPW/25-91:0.36518,Q9RA37_9CYAN/1-67:0.22220):0.04514,((NARB_SYNP7/16-82:0.24229,Q44289_ANASP/2-68:0.16773):0.05336,Q51328_9CYAN/2-68:0.11884):0.02592):0.14940):0.05222):0.23324,NARB_SHEFR/1-62:0.56068):0.28609,(((FDNG_ECOLI/43-104:0.22789,O67146_AQUAE/46-107:0.38533):0.14211,Q9PMF2_CAMJE/50-104:0.60397):0.25477,(((((Q98HH7_RHILO/1-52:0.12045,Q9AAI1_CAUCR/8-63:0.32448):0.06442,NASA_KLEOX/1-55:0.21924):0.12017,Q9I2W3_PSEAE/7-61:0.38517):0.12512,Q9KJ87_PSEPU/3-57:0.33562):0.09478,(Q9EYG2_AMYMD/1-49:0.22339,Q9L2E6_STRCO/11-63:0.36402):0.33610):0.06425):0.10101):0.00737,((Q9V0J3_PYRAB/5-55:0.59052,(((((NASC_BACSU/19-75:0.32688,Q9KF71_BACHD/18-76:0.50175):0.23842,Q9UYM9_PYRAB/3-58:0.62420):0.26781,(FDHF_ECOLI/1-54:0.40408,(((Y006_METJA/1-55:0.25663,Q50514_METTF/1-56:0.42215):0.10481,(Q9C4B5_METVO/4-58:0.14280,(Q9HM26_THEAC/34-85:0.28914,Q97CU9_THEVO/1-52:0.14436):0.47199):0.03460):0.09351,(FDHA_METFO/3-57:0.17724,Q50569_METTF/3-57:0.22509):0.09875):0.14546):0.03653):0.05041,(((Q99RW4_STAAN/257-311:0.11869,(O05397_BACSU/265-319:0.13733,Q9HL15_THEAC/277-331:0.30025):0.16392):0.21079,Q9WX89_CLOPE/1-55:0.46662):0.13780,Q97ZA1_SULSO/1-55:0.39163):0.25184):0.12345,O27595_METTH/197-251:0.24712):0.05322):0.12277,(((Q9ZBV9_STRCO/230-284:0.25228,NUOG2_RHIME/217-271:0.39547):0.06035,(((Q9EZD3_RHIME/248-302:0.11718,O87815_ALCEU/243-297:0.16499):0.03265,Q98BW9_RHILO/260-314:0.06567):0.27387,NUOG_PSEAE/221-275:0.36851):0.13420):0.05608,P77908_MOOTH/221-275:0.39657):0.06124):0.03347):0.03451,((Q9I0C8_PSEAE/6-60:0.54051,Q9L212_STRCO/4-58:0.33433):0.15567,(((Q9PPD9_CAMJE/35-89:0.43906,NAPA_ECOLI/39-93:0.15880):0.06688,(NAPA_PARPN/41-95:0.09267,(NAPA_ALCEU/41-95:0.12570,Q9I4G3_PSEAE/36-90:0.15408):0.02104):0.05886):0.12348,NAPA_DESDE/38-91:0.38792):0.10257):0.11019):0.09544,((Q98BE3_RHILO/40-92:0.08166,O67280_AQUAE/44-98:0.44859):0.11013,((O30286_ARCFU/39-93:0.06330,Q97XX8_SULSO/63-121:0.59352):0.23023,(PHSA_SALTY/41-95:0.53145,PSRA_WOLSU/44-98:0.40025):0.17675):0.22473):0.08883):0.11368,(O30061_ARCFU/39-96:0.53278,(YYAE_BACSU/2-57:0.55170,O34323_BACSU/11-64:0.27090):0.06452):0.14649):0.09183,O29065_ARCFU/38-91:0.45187):0.24617,Q9HR74_HALN1/53-108:0.36690):0.39502,Q9X6B6_YERPE/65-125:0.04313):0.17055,DMSA_HAEIN/47-107:0.26587,YNFE_ECOLI/49-108:0.19964);