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Protein and Associated NucleotideDomains with Inferred Trees

PF04545 phylogeny
for amino acid alignment


 
(((((((((((((((((((((((((((P77841_CHLAU/245-298,HRDC_STRCO/274-327),HRDD_STRCO/268-321),(((((O22058_ARATH/505-558,(P77906_MYCTU/280-333,Q79VF3_CORGL/266-319)),(HRDA_STRCO/331-384,HRDB_STRCO/446-499)),((Q9ZPL1_MAIZE/457-510,Q9ZPL2_MAIZE/469-522),O22056_ARATH/504-557)),(((Q39515_CYACA/524-577,((RPOD_TREPA/545-598,RPOD_BORBU/563-616),(Q39477_CYACA/543-596,Q9ZTL1_CYACA/507-560))),(((Q59302_CHLPS/489-542,O08332_STAAU/303-356),O08348_XANCP/555-608),RPOD_SYNY3/360-413)),(((P71106_CHLAU/281-334,P77840_CHLAU/278-331),P77842_CHLAU/331-384),(O67464_AQUAE/510-563,Q9EZJ8_THEAQ/372-425)))),P77996_THETU/196-248)),((((P96035_SYNSP/330-383,(RPSC_ANASP/348-401,Q9FD90_SYNEL/330-383)),(RPSC_SYNY3/336-389,Q9R6V7_SYNP7/247-300)),(((((Q55525_SYNY3/280-333,((RPSB_ANASP/268-321,P96032_SYNSP/263-316),(Q55350_SYNSP/256-309,Q9KHE5_ANASP/263-316))),P96034_SYNSP/253-306),(P73666_SYNY3/254-307,Q9KHE8_ANASP/268-321)),Q9R6V8_SYNP7/256-309),(Q9KI19_COXBU/285-338,((O52607_RALSO/310-363,Q9JP89_RHOGE/256-309),((O08372_ENTCL/278-331,O33503_PSETO/269-322),Q9S4T1_LEGPN/275-328))))),(P73710_SYNY3/305-358,P94906_MICAE/311-364))),(Q9LD95_ARATH/479-532,((Q9ZNX9_ARATH/452-505,Q9ZSL6_ARATH/351-404),(O83976_TREPA/246-299,P71149_CHLTE/233-286)))),O67437_AQUAE/245-298),((Q9ZIL3_MYXXA/212-263,(RPSB_MYXXA/177-228,Q53611_STIAU/224-275)),((((O82849_PSEHY/248-299,(Q9CKM7_PASMU/226-277,(Q9KJX7_PSEPU/229-280,Q9LAQ0_COXBU/232-283))),Q9JVA9_NEIMA/229-281),(((P94333_BRAJA/239-290,P77830_BRAJA/230-281),(P94330_BRAJA/230-281,Q98FJ9_RHILO/230-281)),(((Q9ZDM4_RICPR/232-283,RP32_ZYMMO/235-286),RP32_CAUCR/230-281),(O30806_RHOCA/233-284,P95657_RHOSH/232-283)))),(Q98FA7_RHILO/222-273,Q9LA67_RHIME/223-274)))),(((RPSE_CLOAB/176-229,Q9K9T9_BACHD/178-231),((O32725_BACSH/197-246,(RPSF_BACLI/199-248,P70879_BACCO/199-248)),((((Q99SI8_STAAN/203-252,(O85017_LISIN/202-251,RPSB_BACAN/202-251)),Q9KFF0_BACHD/202-251),O50232_BACLI/204-253),((((((Q9K4K0_STRCO/222-271,O86702_STRCO/207-256),O52313_STRCO/207-256),Q9ADM4_STRCO/264-313),Q9RIS5_STRCO/249-298),Q9ZIV9_9ACTO/288-337),Q9X7S2_STRCO/237-286)))),Q9KDC8_BACHD/172-225)),(O25676_HELPY/199-248,(((O84064_CHLTR/198-247,((O34843_BACSU/132-181,Q9X004_THEMA/162-211),Q97H70_CLOAB/184-233)),((((Q9Z5S6_ZYMMO/188-237,Q9KQD4_VIBCH/186-235),FLIA_PSEAE/190-239),(FLIA_YEREN/175-224,(Q9AES5_AERHY/181-230,Q9L774_XANOR/186-235))),(O83707_TREPA/203-252,P77959_STRRP/222-271))),O67268_AQUAE/181-230))),Q9X6P9_LEPIN/119-168),(O07627_BACSU/113-162,Q9HYV8_PSEAE/143-192)),((Q9L430_BORBR/119-168,((Q9A9J9_CAUCR/124-173,Q9I3Y1_PSEAE/188-237),Q9I444_PSEAE/118-167)),(Q9I6Y3_PSEAE/117-166,(Q9I222_PSEAE/116-165,Q9I646_PSEAE/116-165)))),((((Q98BR7_RHILO/124-173,Q9X8Z1_STRCO/115-163),Q9A3F1_CAUCR/123-172),(Q98L14_RHILO/130-179,P74595_SYNY3/202-251)),O68887_STRAT/108-157)),((Q9AD34_STRCO/172-221,Q9I2W5_PSEAE/108-157),Q9KBA2_BACHD/122-171)),(((Q55192_SYNY3/129-178,(O53730_MYCTU/133-182,Q9S2A7_STRCO/130-179)),((Q9A7S1_CAUCR/130-179,(Q984A3_RHILO/162-211,Q9RI52_STRCO/141-190)),(Q9K7Z1_BACHD/126-175,Q9AAF3_CAUCR/146-195))),Q9KPR4_VIBCH/138-187)),(SIGY_BACSU/124-173,Q9KF66_BACHD/114-163)),((Q9L1Z6_STRCO/151-200,(P73744_SYNY3/126-175,Q9WWP4_SYNP2/141-190)),(O53798_MYCBO/119-168,Q9L1U1_STRCO/136-185))),(CARQ_MYXXA/114-163,Q9RXX5_DEIRA/171-219)),((SIGV_BACSU/109-158,Q9K7J9_BACHD/126-175),(Q9KCF6_BACHD/118-167,O83130_TREPA/103-152))),(Q97E49_CLOAB/131-180,(SIGW_BACSU/133-182,Q9KG50_BACHD/133-182))),Q9R393_PSESX/129-178),Q98CJ9_RHILO/127-176),((((O86856_STRCO/135-183,(Q9EXR8_BRAJA/106-155,Q9KIN1_PSEFL/20-69)),Q9RKI2_STRCO/138-187),(O68520_MYXXA/129-178,Q9XCD8_MYCSM/141-190)),Q9X1T4_THEMA/130-178)),(O85900_SPHAR/123-172,Q983W6_RHILO/124-173)),O05735_MYCAV/186-235),P73431_SYNY3/166-215),Q9KPA6_VIBCH/135-184,Q9RCH4_AZOVI/135-184);
(((((((((((((((((((((((((((P77841_CHLAU/245-298:0.33671,HRDC_STRCO/274-327:0.40824):0.15396,HRDD_STRCO/268-321:0.53012):0.20291,(((((O22058_ARATH/505-558:0.49062,(P77906_MYCTU/280-333:0.08369,Q79VF3_CORGL/266-319:0.18008):0.16770):0.08305,(HRDA_STRCO/331-384:0.18263,HRDB_STRCO/446-499:0.20125):0.09729):0.05708,((Q9ZPL1_MAIZE/457-510:0.25169,Q9ZPL2_MAIZE/469-522:0.13086):0.06429,O22056_ARATH/504-557:0.17680):0.24451):0.00000,(((Q39515_CYACA/524-577:0.15321,((RPOD_TREPA/545-598:0.18586,RPOD_BORBU/563-616:0.18691):0.18514,(Q39477_CYACA/543-596:0.31877,Q9ZTL1_CYACA/507-560:0.15151):0.17777):0.03262):0.07990,(((Q59302_CHLPS/489-542:0.23315,O08332_STAAU/303-356:0.08370):0.03267,O08348_XANCP/555-608:0.31470):0.03140,RPOD_SYNY3/360-413:0.13329):0.05490):0.03943,(((P71106_CHLAU/281-334:0.09785,P77840_CHLAU/278-331:0.22670):0.20285,P77842_CHLAU/331-384:0.07903):0.10964,(O67464_AQUAE/510-563:0.18555,Q9EZJ8_THEAQ/372-425:0.24345):0.08532):0.12239):0.02728):0.02995,P77996_THETU/196-248:0.65174):0.00000):0.10815,((((P96035_SYNSP/330-383:0.16587,(RPSC_ANASP/348-401:0.14062,Q9FD90_SYNEL/330-383:0.15680):0.06500):0.07298,(RPSC_SYNY3/336-389:0.21039,Q9R6V7_SYNP7/247-300:0.32279):0.06169):0.03233,(((((Q55525_SYNY3/280-333:0.12239,((RPSB_ANASP/268-321:0.36726,P96032_SYNSP/263-316:0.09035):0.07850,(Q55350_SYNSP/256-309:0.22205,Q9KHE5_ANASP/263-316:0.10472):0.05412):0.05437):0.11531,P96034_SYNSP/253-306:0.23544):0.10214,(P73666_SYNY3/254-307:0.09429,Q9KHE8_ANASP/268-321:0.15248):0.01888):0.02284,Q9R6V8_SYNP7/256-309:0.35975):0.18788,(Q9KI19_COXBU/285-338:0.31296,((O52607_RALSO/310-363:0.21037,Q9JP89_RHOGE/256-309:0.26425):0.19971,((O08372_ENTCL/278-331:0.16039,O33503_PSETO/269-322:0.11152):0.05247,Q9S4T1_LEGPN/275-328:0.27225):0.20634):0.07626):0.37957):0.06162):0.15294,(P73710_SYNY3/305-358:0.15485,P94906_MICAE/311-364:0.07268):0.31377):0.10407):0.07770,(Q9LD95_ARATH/479-532:0.46749,((Q9ZNX9_ARATH/452-505:0.63892,Q9ZSL6_ARATH/351-404:0.51197):0.05286,(O83976_TREPA/246-299:0.46824,P71149_CHLTE/233-286:0.37208):0.19212):0.08308):0.00000):0.22409,O67437_AQUAE/245-298:0.20306):0.10997,((Q9ZIL3_MYXXA/212-263:0.71837,(RPSB_MYXXA/177-228:0.18059,Q53611_STIAU/224-275:0.10515):0.31803):0.14786,((((O82849_PSEHY/248-299:0.16861,(Q9CKM7_PASMU/226-277:0.21897,(Q9KJX7_PSEPU/229-280:0.06917,Q9LAQ0_COXBU/232-283:0.22490):0.18537):0.27742):0.10970,Q9JVA9_NEIMA/229-281:0.19556):0.22490,(((P94333_BRAJA/239-290:0.41604,P77830_BRAJA/230-281:0.20351):0.07603,(P94330_BRAJA/230-281:0.06874,Q98FJ9_RHILO/230-281:0.15023):0.11274):0.09090,(((Q9ZDM4_RICPR/232-283:0.47541,RP32_ZYMMO/235-286:0.12922):0.05167,RP32_CAUCR/230-281:0.11074):0.05417,(O30806_RHOCA/233-284:0.15500,P95657_RHOSH/232-283:0.13293):0.08499):0.07549):0.19211):0.11471,(Q98FA7_RHILO/222-273:0.24572,Q9LA67_RHIME/223-274:0.20572):0.12237):0.15096):0.29673):0.24821,(((RPSE_CLOAB/176-229:0.12057,Q9K9T9_BACHD/178-231:0.16775):0.04744,((O32725_BACSH/197-246:0.34401,(RPSF_BACLI/199-248:0.00000,P70879_BACCO/199-248:0.26094):0.11571):0.38139,((((Q99SI8_STAAN/203-252:0.20550,(O85017_LISIN/202-251:0.12961,RPSB_BACAN/202-251:0.37064):0.07104):0.05755,Q9KFF0_BACHD/202-251:0.25279):0.12414,O50232_BACLI/204-253:0.05359):0.23727,((((((Q9K4K0_STRCO/222-271:0.27497,O86702_STRCO/207-256:0.00000):0.11855,O52313_STRCO/207-256:0.17883):0.31197,Q9ADM4_STRCO/264-313:0.11188):0.13975,Q9RIS5_STRCO/249-298:0.14391):0.21173,Q9ZIV9_9ACTO/288-337:0.34091):0.10009,Q9X7S2_STRCO/237-286:0.15512):0.32637):0.09731):0.08025):0.16053,Q9KDC8_BACHD/172-225:0.48930):0.13298):0.11492,(O25676_HELPY/199-248:0.44945,(((O84064_CHLTR/198-247:0.29141,((O34843_BACSU/132-181:0.75916,Q9X004_THEMA/162-211:0.21335):0.10696,Q97H70_CLOAB/184-233:0.38458):0.03886):0.06293,((((Q9Z5S6_ZYMMO/188-237:0.44398,Q9KQD4_VIBCH/186-235:0.09776):0.09324,FLIA_PSEAE/190-239:0.15042):0.00000,(FLIA_YEREN/175-224:0.21075,(Q9AES5_AERHY/181-230:0.52330,Q9L774_XANOR/186-235:0.04793):0.14117):0.04417):0.16897,(O83707_TREPA/203-252:0.31876,P77959_STRRP/222-271:0.22377):0.06201):0.05769):0.16111,O67268_AQUAE/181-230:0.40439):0.07247):0.11719):0.25716,Q9X6P9_LEPIN/119-168:0.85332):0.11635,(O07627_BACSU/113-162:0.27050,Q9HYV8_PSEAE/143-192:0.75717):0.36368):0.09529,((Q9L430_BORBR/119-168:0.29802,((Q9A9J9_CAUCR/124-173:0.46242,Q9I3Y1_PSEAE/188-237:0.35928):0.17660,Q9I444_PSEAE/118-167:0.34564):0.06683):0.12937,(Q9I6Y3_PSEAE/117-166:0.60141,(Q9I222_PSEAE/116-165:0.52434,Q9I646_PSEAE/116-165:0.58950):0.48731):0.11630):0.55283):0.04725,((((Q98BR7_RHILO/124-173:0.56837,Q9X8Z1_STRCO/115-163:0.68905):0.18173,Q9A3F1_CAUCR/123-172:0.84380):0.00000,(Q98L14_RHILO/130-179:0.57761,P74595_SYNY3/202-251:0.66953):0.21527):0.13666,O68887_STRAT/108-157:0.48206):0.15434):0.00000,((Q9AD34_STRCO/172-221:1.10933,Q9I2W5_PSEAE/108-157:0.85498):0.12459,Q9KBA2_BACHD/122-171:0.43265):0.18585):0.06512,(((Q55192_SYNY3/129-178:0.24469,(O53730_MYCTU/133-182:0.46450,Q9S2A7_STRCO/130-179:0.32385):0.35223):0.20837,((Q9A7S1_CAUCR/130-179:0.73226,(Q984A3_RHILO/162-211:0.39085,Q9RI52_STRCO/141-190:0.34879):0.19268):0.04295,(Q9K7Z1_BACHD/126-175:0.64434,Q9AAF3_CAUCR/146-195:0.35797):0.17034):0.01582):0.14968,Q9KPR4_VIBCH/138-187:0.59736):0.16481):0.00000,(SIGY_BACSU/124-173:0.62687,Q9KF66_BACHD/114-163:0.52078):0.31844):0.02796,((Q9L1Z6_STRCO/151-200:0.31354,(P73744_SYNY3/126-175:0.33717,Q9WWP4_SYNP2/141-190:0.10341):0.37541):0.08082,(O53798_MYCBO/119-168:0.44668,Q9L1U1_STRCO/136-185:0.54173):0.20133):0.25084):0.03870,(CARQ_MYXXA/114-163:0.67095,Q9RXX5_DEIRA/171-219:0.30834):0.37814):0.13334,((SIGV_BACSU/109-158:0.38874,Q9K7J9_BACHD/126-175:0.67841):0.26877,(Q9KCF6_BACHD/118-167:0.64142,O83130_TREPA/103-152:0.63204):0.00000):0.11197):0.00000,(Q97E49_CLOAB/131-180:0.40889,(SIGW_BACSU/133-182:0.18127,Q9KG50_BACHD/133-182:0.24256):0.22307):0.11129):0.01932,Q9R393_PSESX/129-178:0.97505):0.03342,Q98CJ9_RHILO/127-176:0.59847):0.09951,((((O86856_STRCO/135-183:0.64298,(Q9EXR8_BRAJA/106-155:0.22686,Q9KIN1_PSEFL/20-69:0.28777):0.11190):0.15820,Q9RKI2_STRCO/138-187:0.27618):0.19374,(O68520_MYXXA/129-178:0.26999,Q9XCD8_MYCSM/141-190:0.31570):0.16376):0.10523,Q9X1T4_THEMA/130-178:0.45280):0.03020):0.00000,(O85900_SPHAR/123-172:0.65895,Q983W6_RHILO/124-173:0.34223):0.12618):0.12232,O05735_MYCAV/186-235:0.41895):0.07485,P73431_SYNY3/166-215:0.38784):0.39202,Q9KPA6_VIBCH/135-184:0.00000,Q9RCH4_AZOVI/135-184:0.29927);