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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03330 phylogeny
for restricted amino acid alignment


 
((((((((((((((((((((Q946I1_ORYSA/65-158,((Q8W2X8_ORYSA/72-160,(EXPA7_ARATH/72-157,EXP18_ARATH/66-152)),Q9SNH7_ORYSA/89-175)),(Q8LKJ9_GOSHI/67-151,EXP12_ARATH/62-146)),(((EXPA5_ARATH/73-151,Q8S347_CAPAN/59-136),Q8L9W7_ARATH/58-143),(Q84L77_PYRCO/65-150,Q9SWD3_9CARY/17-94))),((P93442_ORYSA/59-144,Q9FY30_FESPR/64-150),Q9AYR1_EUSGR/33-120)),(((Q7XJA5_MARPO/33-124,Q9FYS9_9LAMI/22-113),Q84L40_MIRJA/67-154),(EXPA2_ARATH/67-152,Q84L49_MIRJA/65-150))),Q9SDZ3_9FILI/63-148),((((((Q946I9_ORYSA/59-146,Q9FY31_FESPR/62-149),((Q8LMP7_ORYSA/65-153,Q946H7_ORYSA/62-150),O24208_ORYSA/69-157)),((Q7X9Q2_SAMNI/65-153,Q8LG16_ARATH/61-149),Q9ZP38_TOBAC/65-153)),(((Q7XE34_ORYSA/62-150,((Q9FY29_FESPR/64-151,Q9FY28_FESPR/60-147),Q8LMP8_ORYSA/84-161)),Q7XE35_ORYSA/59-147),Q946H8_ORYSA/85-173)),((Q9XHW9_ORYSA/62-149,Q9XHX0_ORYSA/60-147),Q8H6F7_MUSAC/60-147)),EXP17_ARATH/63-151)),(Q8LGS7_PHYPA/73-158,Q9ZTG7_LYCES/19-103)),(Q7XJA1_PHYPA/86-171,((Q7XUD0_ORYSA/67-153,Q8LAT2_ARATH/75-161),(Q946I5_ORYSA/18-105,EXP20_ARATH/65-152)))),(Q7XJA2_PHYPA/67-149,Q84V44_PHYPA/67-150)),(Q84V43_PHYPA/66-153,Q84V45_PHYPA/65-152)),Q8H276_ORYSA/110-180),((O65013_PINRA/74-152,((EXPR1_ARATH/62-139,Q8H4Q7_ORYSA/61-139),((Q84L47_MIRJA/44-123,(Q7XHJ2_QUERO/61-138,Q8LC65_ARATH/58-137)),(Q8H274_ORYSA/71-148,(Q7XCL0_ORYSA/68-146,Q8LGS6_ORYSA/74-151))))),((((Q39802_SOYBN/84-165,((((Q9FQ82_ORYSA/80-159,Q949I4_FESPR/69-150),Q94KT1_MAIZE/22-101),(Q94LR4_ORYSA/92-171,(O24230_ORYSA/68-147,Q9ZR84_WHEAT/77-158))),(((MPAC1_CYNDA/56-135,MPAL1_LOLPR/78-157),(Q7XCG7_ORYSA/80-159,Q8H7T4_ORYSA/78-157)),Q84UA7_MAIZE/80-159))),((Q9FRU8_ATRLE/80-160,(Q9AXE4_TOBAC/81-163,Q84WA9_ARATH/69-151)),(Q941I7_ORYSA/75-166,(Q7XT39_ORYSA/81-163,Q94KT0_MAIZE/117-199)))),(Q84V41_PHYPA/70-157,Q84V42_PHYPA/73-155)),((Q8LBG2_ARATH/66-146,Q8LLL9_ORYSA/84-166),EXPB1_ARATH/76-159)))),((EXPR2_ARATH/45-121,Q9ZP41_9ROSI/51-128),Q84V62_HEDHE/26-102)),((Q93MF1_AMYMD/34-132,Q9X5U4_STRLA/36-135),(((Q89QY0_BRAJA/43-149,(Q97TP0_CLOAB/118-201,YDJM_BACSU/30-121)),(Q89JS4_BRAJA/38-126,(((((RLPA_SYNY3/227-317,Q8DLZ3_SYNEL/217-307),(Q89X70_BRAJA/74-161,RLPA_ANASP/274-366)),(Q7U7N8_SYNPX/60-150,(Q7U4N9_SYNPX/113-203,Q7V582_PROMM/105-195))),((((Q7NLH5_GLOVI/257-347,Q89G77_BRAJA/82-168),(Q98DT8_RHILO/32-119,(Q8FXW2_BRUSU/28-115,Q8UIK3_AGRT5/29-116))),((((RLPA_TREPA/27-117,Q8KAS8_CHLTE/66-156),Q7VKA6_HAEDU/76-166),((Q8KA94_CHLTE/70-164,Q9A7A1_CAUCR/66-156),((RLPA_NEIMA/59-149,(((Q87VW3_PSESM/103-193,Q8EHQ2_SHEON/98-188),(Q7MN13_VIBVY/80-170,Q87C59_XYLFT/126-216)),(Q83CW5_COXBU/71-161,(Q7W015_BORPE/84-174,(Q82T62_NITEU/105-195,Q7NPV8_CHRVO/99-189))))),(((O51677_BORBU/44-134,Q8F9X6_LEPIN/103-193),Q7PBP9_RICSI/166-259),((Q89LM2_BRAJA/151-241,(Q8G0U5_BRUSU/105-195,Q8UF98_AGRT5/115-205)),(Q8XUC4_RALSO/94-184,(Q7N763_PHOLL/72-162,(RLPA_ECOLI/78-166,RLPA_YERPE/75-165)))))))),(((RLPA_HAEIN/69-159,RLPA_PASMU/68-158),((RLPA_HELPY/115-205,Q7M7V1_WOLSU/75-165),RLPA_CAMJE/77-167)),O67382_AQUAE/55-145))),(Q87WR7_PSESM/28-118,Q9HVT6_PSEAE/31-121))),RLPA_AQUAE/129-219))),Y3177_SYNY3/1-87))),Q9P8A6_AGABI/167-239),Q7S4C4_NEUCR/73-147),Q9AF65_CLAMS/559-624),O34918_BACSU/58-127),Q87AG9_XYLFT/395-464,Q8P513_XANCP/417-486);
((((((((((((((((((((Q946I1_ORYSA/65-158:0.39946,((Q8W2X8_ORYSA/72-160:0.20161,(EXPA7_ARATH/72-157:0.14413,EXP18_ARATH/66-152:0.23188):0.08889):0.19342,Q9SNH7_ORYSA/89-175:0.25481):0.14414):0.04344,(Q8LKJ9_GOSHI/67-151:0.08428,EXP12_ARATH/62-146:0.17660):0.28338):0.05292,(((EXPA5_ARATH/73-151:0.22604,Q8S347_CAPAN/59-136:0.10072):0.07653,Q8L9W7_ARATH/58-143:0.16751):0.05103,(Q84L77_PYRCO/65-150:0.03755,Q9SWD3_9CARY/17-94:0.21207):0.06215):0.09021):0.04296,((P93442_ORYSA/59-144:0.04684,Q9FY30_FESPR/64-150:0.22353):0.08944,Q9AYR1_EUSGR/33-120:0.12907):0.07303):0.04358,(((Q7XJA5_MARPO/33-124:0.40991,Q9FYS9_9LAMI/22-113:0.37393):0.10989,Q84L40_MIRJA/67-154:0.10015):0.09508,(EXPA2_ARATH/67-152:0.20316,Q84L49_MIRJA/65-150:0.09161):0.05267):0.00447):0.06326,Q9SDZ3_9FILI/63-148:0.21341):0.06855,((((((Q946I9_ORYSA/59-146:0.05057,Q9FY31_FESPR/62-149:0.21634):0.15684,((Q8LMP7_ORYSA/65-153:0.11261,Q946H7_ORYSA/62-150:0.16783):0.07655,O24208_ORYSA/69-157:0.21020):0.06537):0.02929,((Q7X9Q2_SAMNI/65-153:0.11414,Q8LG16_ARATH/61-149:0.16326):0.04835,Q9ZP38_TOBAC/65-153:0.11080):0.02281):0.09519,(((Q7XE34_ORYSA/62-150:0.13786,((Q9FY29_FESPR/64-151:0.23286,Q9FY28_FESPR/60-147:0.03258):0.08667,Q8LMP8_ORYSA/84-161:0.18619):0.08577):0.01185,Q7XE35_ORYSA/59-147:0.16266):0.05075,Q946H8_ORYSA/85-173:0.11409):0.05448):0.04906,((Q9XHW9_ORYSA/62-149:0.27441,Q9XHX0_ORYSA/60-147:0.03457):0.08460,Q8H6F7_MUSAC/60-147:0.15653):0.06725):0.09566,EXP17_ARATH/63-151:0.19266):0.04380):0.08111,(Q8LGS7_PHYPA/73-158:0.28993,Q9ZTG7_LYCES/19-103:0.37869):0.09991):0.11787,(Q7XJA1_PHYPA/86-171:0.31856,((Q7XUD0_ORYSA/67-153:0.11562,Q8LAT2_ARATH/75-161:0.29013):0.34659,(Q946I5_ORYSA/18-105:0.26737,EXP20_ARATH/65-152:0.19120):0.17759):0.10614):0.05616):0.06225,(Q7XJA2_PHYPA/67-149:0.23637,Q84V44_PHYPA/67-150:0.20636):0.11790):0.10858,(Q84V43_PHYPA/66-153:0.11111,Q84V45_PHYPA/65-152:0.19762):0.39035):0.14739,Q8H276_ORYSA/110-180:0.32127):0.37956,((O65013_PINRA/74-152:0.49078,((EXPR1_ARATH/62-139:0.42957,Q8H4Q7_ORYSA/61-139:0.32594):0.19693,((Q84L47_MIRJA/44-123:0.39503,(Q7XHJ2_QUERO/61-138:0.21357,Q8LC65_ARATH/58-137:0.16713):0.10902):0.08021,(Q8H274_ORYSA/71-148:0.46668,(Q7XCL0_ORYSA/68-146:0.17563,Q8LGS6_ORYSA/74-151:0.08572):0.10247):0.17201):0.12821):0.07623):0.25529,((((Q39802_SOYBN/84-165:0.30180,((((Q9FQ82_ORYSA/80-159:0.26303,Q949I4_FESPR/69-150:0.29796):0.08280,Q94KT1_MAIZE/22-101:0.09637):0.04313,(Q94LR4_ORYSA/92-171:0.17260,(O24230_ORYSA/68-147:0.01460,Q9ZR84_WHEAT/77-158:0.28626):0.07105):0.02974):0.05606,(((MPAC1_CYNDA/56-135:0.16786,MPAL1_LOLPR/78-157:0.23677):0.14016,(Q7XCG7_ORYSA/80-159:0.14791,Q8H7T4_ORYSA/78-157:0.18201):0.04975):0.10146,Q84UA7_MAIZE/80-159:0.20946):0.09955):0.35215):0.06183,((Q9FRU8_ATRLE/80-160:0.23223,(Q9AXE4_TOBAC/81-163:0.43980,Q84WA9_ARATH/69-151:0.17806):0.10787):0.06065,(Q941I7_ORYSA/75-166:0.21016,(Q7XT39_ORYSA/81-163:0.14313,Q94KT0_MAIZE/117-199:0.34960):0.03327):0.11838):0.04832):0.12222,(Q84V41_PHYPA/70-157:0.35864,Q84V42_PHYPA/73-155:0.19975):0.40349):0.07524,((Q8LBG2_ARATH/66-146:0.17797,Q8LLL9_ORYSA/84-166:0.23311):0.12367,EXPB1_ARATH/76-159:0.18208):0.32607):0.08244):0.28335):0.28955,((EXPR2_ARATH/45-121:0.25994,Q9ZP41_9ROSI/51-128:0.25728):0.14163,Q84V62_HEDHE/26-102:0.63484):0.25177):0.15313,((Q93MF1_AMYMD/34-132:0.15632,Q9X5U4_STRLA/36-135:0.55454):0.64826,(((Q89QY0_BRAJA/43-149:0.86318,(Q97TP0_CLOAB/118-201:0.55541,YDJM_BACSU/30-121:1.25185):0.19397):0.06764,(Q89JS4_BRAJA/38-126:0.65356,(((((RLPA_SYNY3/227-317:0.15088,Q8DLZ3_SYNEL/217-307:0.14341):0.07891,(Q89X70_BRAJA/74-161:0.36672,RLPA_ANASP/274-366:0.09696):0.06784):0.05632,(Q7U7N8_SYNPX/60-150:0.19996,(Q7U4N9_SYNPX/113-203:0.12603,Q7V582_PROMM/105-195:0.11175):0.12992):0.15126):0.06381,((((Q7NLH5_GLOVI/257-347:0.34659,Q89G77_BRAJA/82-168:0.29528):0.14200,(Q98DT8_RHILO/32-119:0.01815,(Q8FXW2_BRUSU/28-115:0.07191,Q8UIK3_AGRT5/29-116:0.25122):0.16197):0.27857):0.09130,((((RLPA_TREPA/27-117:0.25054,Q8KAS8_CHLTE/66-156:0.26968):0.12223,Q7VKA6_HAEDU/76-166:0.31893):0.09803,((Q8KA94_CHLTE/70-164:0.34979,Q9A7A1_CAUCR/66-156:0.21396):0.09455,((RLPA_NEIMA/59-149:0.13974,(((Q87VW3_PSESM/103-193:0.19323,Q8EHQ2_SHEON/98-188:0.21293):0.08792,(Q7MN13_VIBVY/80-170:0.15048,Q87C59_XYLFT/126-216:0.24125):0.03291):0.05946,(Q83CW5_COXBU/71-161:0.37672,(Q7W015_BORPE/84-174:0.30420,(Q82T62_NITEU/105-195:0.24633,Q7NPV8_CHRVO/99-189:0.15725):0.07121):0.00970):0.07362):0.10169):0.03793,(((O51677_BORBU/44-134:0.25086,Q8F9X6_LEPIN/103-193:0.29566):0.07577,Q7PBP9_RICSI/166-259:0.26690):0.08110,((Q89LM2_BRAJA/151-241:0.18616,(Q8G0U5_BRUSU/105-195:0.17276,Q8UF98_AGRT5/115-205:0.25407):0.08629):0.14021,(Q8XUC4_RALSO/94-184:0.40543,(Q7N763_PHOLL/72-162:0.11631,(RLPA_ECOLI/78-166:0.33478,RLPA_YERPE/75-165:0.08521):0.12562):0.27014):0.05075):0.05097):0.04788):0.05059):0.08241):0.05954,(((RLPA_HAEIN/69-159:0.24935,RLPA_PASMU/68-158:0.13914):0.21867,((RLPA_HELPY/115-205:0.15152,Q7M7V1_WOLSU/75-165:0.14017):0.10358,RLPA_CAMJE/77-167:0.14618):0.12696):0.09281,O67382_AQUAE/55-145:0.34173):0.04179):0.12596):0.04139,(Q87WR7_PSESM/28-118:0.21204,Q9HVT6_PSEAE/31-121:0.15522):0.07628):0.03184):0.03374,RLPA_AQUAE/129-219:0.49027):0.07986):0.11840):0.25302,Y3177_SYNY3/1-87:0.33184):0.44285):0.33470):0.15604,Q9P8A6_AGABI/167-239:0.85406):0.09069,Q7S4C4_NEUCR/73-147:0.66370):0.14062,Q9AF65_CLAMS/559-624:0.43351):0.52376,O34918_BACSU/58-127:0.22114):0.07936,Q87AG9_XYLFT/395-464:0.20138,Q8P513_XANCP/417-486:0.06433);