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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03171 phylogeny
for restricted amino acid alignment


 
(((((((((((((((Q9ZTA1_ARATH/261-356,Q9ZTA2_ARATH/248-345),Q9ZTA3_ARATH/165-271),(((CEFE_STRCL/155-267,CEFE_NOCLA/157-269),((Q48740_LYSLA/156-268,Q48741_LYSLA/156-268),CEFF_NOCLA/155-267)),(((IPNS_STRGR/180-286,IPNS_STRLP/185-290),IPNS_NOCLA/178-284),(IPNS_PENCH/180-288,IPNS_LYSLA/177-283)))),(((O60075_SCHPO/159-267,EFE_PSESJ/166-286),(O65485_ARATH/166-270,O24838_ACIAD/193-299)),((O49561_ARATH/146-245,((((((Q9XHR0_CITLA/215-314,Q39541_CUCMA/219-318),Q39111_ARATH/221-320),((Q40994_PEA/223-322,O04706_WHEAT/200-299),(Q9ZWQ1_LACSA/214-313,Q41366_SPIOL/216-315))),Q39112_ARATH/222-321),((((G2OX_PHACN/176-280,(O04162_9ROSI/165-271,G2OX1_ARATH/166-273)),(G2OX3_ARATH/176-278,G2OX2_ARATH/180-283)),G2OX1_PEA/172-276),G2OX2_PEA/171-285)),(((((((Q9XH70_PRUAR/219-318,(P93824_ARATH/208-308,P93821_ARATH/194-293)),Q43383_ARATH/210-310),(Q9SKK4_ARATH/207-307,O80850_ARATH/207-307)),(DV4H_CATRO/242-343,O80851_ARATH/209-311)),(ACCO3_LYCES/212-311,O24018_LYCES/213-312)),(((((Q9ZWQ0_LACSA/198-298,O24623_PEA/207-307),Q9ZWR7_LYCES/205-308),Q9ZT84_ARATH/201-301),Q9SVS8_ARATH/202-305),O24417_CUCMA/198-299)),(((Q9ZSA7_ARATH/195-294,((Q43640_SOLME/193-291,Q9XJ43_ATRBE/193-292),(Q40063_HORVU/185-284,Q40061_HORVU/184-283))),Q9ZQA5_ARATH/241-340),(((((LDOX_PERFR/214-313,LDOX_MAIZE/230-329),((FLS_CITUN/197-296,FLS_SOLTU/214-310),FLS_MATIN/151-250)),(O48631_PRUAR/201-301,Q9XIA5_ARATH/201-301)),(((Q9XIW9_ORYSA/202-301,O23478_ARATH/101-200),Q9SP53_DAUCA/192-293),(((O82126_CUCSA/153-255,((O22391_STELP/150-250,O65158_PHAVU/153-253),(Q39316_BRANA/156-256,O82127_CUCSA/152-253))),O81606_SORBI/159-259),(Q9ZUN4_ARATH/158-259,Q43419_CUCME/151-252)))),((Q9SRM3_ARATH/249-349,O80449_ARATH/202-302),(((Q9SB32_ARATH/204-304,Q9SHG1_ARATH/194-294),Q9SYM7_ARATH/207-307),Q40839_PICGL/148-248))))))),(Q9SD54_ARATH/205-302,((O23518_ARATH/106-212,(Q9SN92_ARATH/149-250,Q9SNC8_ARATH/182-286)),((ISP7_SCHPO/255-353,(O82017_MALDO/154-255,Q9XI75_ARATH/152-254)),O23763_CUCMA/160-257)))))),(PLOD_CAEEL/639-730,(((PLOD1_HUMAN/636-727,PLOD3_HUMAN/647-738),Q9VTH0_DROME/630-721),PLOD2_MOUSE/646-737))),(((((((Q09973_CAEEL/137-240,(Q11120_SCHPO/124-230,YEN9_YEAST/141-247)),(Y191_SYNY3/189-300,P74376_SYNY3/238-349)),((EGLN3_RAT/232-330,Q9VN98_DROME/150-248),O45918_CAEEL/468-566)),(O81759_ARATH/113-221,(((Q9SZS9_ARATH/194-287,Q9ZW86_ARATH/162-279),((Q9VVQ6_DROME/391-499,((Q9VA60_DROME/376-465,(Q9VA64_DROME/407-512,Q9VA65_DROME/403-510)),(P4HA1_MOUSE/411-519,(P4HA2_CAEEL/401-509,P4HA1_CAEEL/404-512)))),((((Q17985_CAEEL/167-277,Q9XUP0_CAEEL/168-278),Q9XWX4_CAEEL/398-508),Q9XWX4_CAEEL/148-255),Q84406_CHVP1/134-240))),Q9SQT3_ARATH/121-225))),(Q13512_HUMAN/369-490,Q9R1J8_RAT/549-670)),(Y3529_BORPE/78-178,PIUC_PSEAE/78-178)),O23127_ARATH/995-1094)),(((RRPO_ACLSA/748-836,O91632_9VIRU/762-870),((((O71188_9CLOS/1601-1694,RRPO_PMV/599-690),RRPO_SHVX/653-743),(Q96806_9VIRU/647-736,Q67704_9VIRU/645-738)),(Q65652_9VIRU/750-841,(Q67654_9VIRU/681-772,O91901_9VIRU/781-877)))),Q64962_9VIRU/762-853)),((ALKB_ARATH/225-320,ALKB_SCHPO/182-272),(ALKB_CAUCR/117-218,ALKB_ECOLI/113-213))),Q9SIE0_ARATH/194-314),Q9VKU5_DROME/73-179),Q9UT12_SCHPO/114-212),(Q9U3P9_CAEEL/217-322,Q9W232_DROME/220-325)),Q9VL81_DROME/151-278),Q9SL49_ARATH/317-414),Q9ZU81_ARATH/255-351,Q9ZT92_ARATH/343-439);
(((((((((((((((Q9ZTA1_ARATH/261-356:0.20903,Q9ZTA2_ARATH/248-345:0.24549):0.20684,Q9ZTA3_ARATH/165-271:0.25076):0.43159,(((CEFE_STRCL/155-267:0.18820,CEFE_NOCLA/157-269:0.06049):0.00000,((Q48740_LYSLA/156-268:0.12557,Q48741_LYSLA/156-268:0.19438):0.07148,CEFF_NOCLA/155-267:0.29684):0.07995):1.01346,(((IPNS_STRGR/180-286:0.00000,IPNS_STRLP/185-290:0.30404):0.18023,IPNS_NOCLA/178-284:0.11443):0.06700,(IPNS_PENCH/180-288:0.31881,IPNS_LYSLA/177-283:0.10287):0.12461):0.69874):0.29464):0.08811,(((O60075_SCHPO/159-267:0.54945,EFE_PSESJ/166-286:0.85509):0.27990,(O65485_ARATH/166-270:0.51877,O24838_ACIAD/193-299:0.85131):0.31404):0.08331,((O49561_ARATH/146-245:0.40444,((((((Q9XHR0_CITLA/215-314:0.11638,Q39541_CUCMA/219-318:0.22290):0.08602,Q39111_ARATH/221-320:0.11160):0.03398,((Q40994_PEA/223-322:0.22478,O04706_WHEAT/200-299:0.12287):0.03430,(Q9ZWQ1_LACSA/214-313:0.11480,Q41366_SPIOL/216-315:0.17473):0.01150):0.05848):0.03793,Q39112_ARATH/222-321:0.11432):0.22473,((((G2OX_PHACN/176-280:0.08969,(O04162_9ROSI/165-271:0.09165,G2OX1_ARATH/166-273:0.17499):0.06889):0.16785,(G2OX3_ARATH/176-278:0.24968,G2OX2_ARATH/180-283:0.03342):0.07877):0.15766,G2OX1_PEA/172-276:0.17537):0.16166,G2OX2_PEA/171-285:0.18611):0.51784):0.07799,(((((((Q9XH70_PRUAR/219-318:0.19487,(P93824_ARATH/208-308:0.12934,P93821_ARATH/194-293:0.14162):0.04499):0.05145,Q43383_ARATH/210-310:0.21167):0.10443,(Q9SKK4_ARATH/207-307:0.23666,O80850_ARATH/207-307:0.09568):0.09657):0.06187,(DV4H_CATRO/242-343:0.30621,O80851_ARATH/209-311:0.19777):0.14917):0.11681,(ACCO3_LYCES/212-311:0.22370,O24018_LYCES/213-312:0.10525):0.11894):0.32144,(((((Q9ZWQ0_LACSA/198-298:0.04979,O24623_PEA/207-307:0.20292):0.03830,Q9ZWR7_LYCES/205-308:0.27719):0.01539,Q9ZT84_ARATH/201-301:0.24355):0.14099,Q9SVS8_ARATH/202-305:0.41583):0.16526,O24417_CUCMA/198-299:0.51718):0.11961):0.14412,(((Q9ZSA7_ARATH/195-294:0.23225,((Q43640_SOLME/193-291:0.26020,Q9XJ43_ATRBE/193-292:0.40913):0.14652,(Q40063_HORVU/185-284:0.17083,Q40061_HORVU/184-283:0.29202):0.43674):0.11344):0.09103,Q9ZQA5_ARATH/241-340:0.41879):0.05228,(((((LDOX_PERFR/214-313:0.11233,LDOX_MAIZE/230-329:0.24461):0.18264,((FLS_CITUN/197-296:0.06890,FLS_SOLTU/214-310:0.20877):0.05707,FLS_MATIN/151-250:0.40547):0.14958):0.25449,(O48631_PRUAR/201-301:0.21777,Q9XIA5_ARATH/201-301:0.15605):0.33947):0.10410,(((Q9XIW9_ORYSA/202-301:0.12799,O23478_ARATH/101-200:0.16679):0.22102,Q9SP53_DAUCA/192-293:0.41887):0.04747,(((O82126_CUCSA/153-255:0.08539,((O22391_STELP/150-250:0.29073,O65158_PHAVU/153-253:0.10918):0.02668,(Q39316_BRANA/156-256:0.12223,O82127_CUCSA/152-253:0.12719):0.10865):0.05090):0.06668,O81606_SORBI/159-259:0.24877):0.09333,(Q9ZUN4_ARATH/158-259:0.13738,Q43419_CUCME/151-252:0.11926):0.18642):0.30858):0.09536):0.03774,((Q9SRM3_ARATH/249-349:0.13928,O80449_ARATH/202-302:0.15481):0.23259,(((Q9SB32_ARATH/204-304:0.09225,Q9SHG1_ARATH/194-294:0.17875):0.04759,Q9SYM7_ARATH/207-307:0.12909):0.15575,Q40839_PICGL/148-248:0.31167):0.08735):0.09164):0.06565):0.13817):0.10904):0.07961):0.11089,(Q9SD54_ARATH/205-302:0.57802,((O23518_ARATH/106-212:0.50612,(Q9SN92_ARATH/149-250:0.14509,Q9SNC8_ARATH/182-286:0.18032):0.25221):0.39993,((ISP7_SCHPO/255-353:0.49867,(O82017_MALDO/154-255:0.19784,Q9XI75_ARATH/152-254:0.11488):0.61562):0.19721,O23763_CUCMA/160-257:0.64254):0.06293):0.07582):0.07606):0.10060):0.10193):0.74090,(PLOD_CAEEL/639-730:0.12026,(((PLOD1_HUMAN/636-727:0.15774,PLOD3_HUMAN/647-738:0.14458):0.03036,Q9VTH0_DROME/630-721:0.18962):0.15597,PLOD2_MOUSE/646-737:0.42616):0.20988):0.67655):0.39948,(((((((Q09973_CAEEL/137-240:0.71014,(Q11120_SCHPO/124-230:0.29317,YEN9_YEAST/141-247:0.24949):0.48700):0.41966,(Y191_SYNY3/189-300:0.23906,P74376_SYNY3/238-349:0.26258):0.54378):0.21815,((EGLN3_RAT/232-330:0.24446,Q9VN98_DROME/150-248:0.12446):0.14894,O45918_CAEEL/468-566:0.42011):0.67753):0.39890,(O81759_ARATH/113-221:0.75757,(((Q9SZS9_ARATH/194-287:0.69444,Q9ZW86_ARATH/162-279:0.37116):0.07931,((Q9VVQ6_DROME/391-499:0.70127,((Q9VA60_DROME/376-465:0.69596,(Q9VA64_DROME/407-512:0.12222,Q9VA65_DROME/403-510:0.23952):0.16175):0.04631,(P4HA1_MOUSE/411-519:0.17369,(P4HA2_CAEEL/401-509:0.09878,P4HA1_CAEEL/404-512:0.24773):0.15813):0.09613):0.09296):0.18428,((((Q17985_CAEEL/167-277:0.36092,Q9XUP0_CAEEL/168-278:0.16154):0.13458,Q9XWX4_CAEEL/398-508:0.23080):0.24464,Q9XWX4_CAEEL/148-255:0.44693):0.12196,Q84406_CHVP1/134-240:0.80000):0.17080):0.20498):0.10100,Q9SQT3_ARATH/121-225:0.21218):0.02591):0.78064):0.17713,(Q13512_HUMAN/369-490:0.27363,Q9R1J8_RAT/549-670:0.15253):0.94682):0.26260,(Y3529_BORPE/78-178:0.26885,PIUC_PSEAE/78-178:0.31347):0.74369):0.41469,O23127_ARATH/995-1094:0.98925):0.14457):0.55932,(((RRPO_ACLSA/748-836:0.62116,O91632_9VIRU/762-870:0.53864):0.11503,((((O71188_9CLOS/1601-1694:0.39990,RRPO_PMV/599-690:0.49199):0.13540,RRPO_SHVX/653-743:0.35987):0.04507,(Q96806_9VIRU/647-736:0.37966,Q67704_9VIRU/645-738:0.49772):0.15263):0.03890,(Q65652_9VIRU/750-841:0.60851,(Q67654_9VIRU/681-772:0.44179,O91901_9VIRU/781-877:0.50936):0.11991):0.19142):0.11438):0.01780,Q64962_9VIRU/762-853:0.47833):0.44177):0.31437,((ALKB_ARATH/225-320:0.54220,ALKB_SCHPO/182-272:0.52625):0.61556,(ALKB_CAUCR/117-218:0.58986,ALKB_ECOLI/113-213:0.37378):0.16401):0.38936):0.23435,Q9SIE0_ARATH/194-314:0.63422):0.12023,Q9VKU5_DROME/73-179:1.06925):0.18277,Q9UT12_SCHPO/114-212:1.15590):0.21337,(Q9U3P9_CAEEL/217-322:0.47885,Q9W232_DROME/220-325:0.14896):0.13894):0.31885,Q9VL81_DROME/151-278:1.29583):0.47878,Q9SL49_ARATH/317-414:0.51920):0.47641,Q9ZU81_ARATH/255-351:0.00000,Q9ZT92_ARATH/343-439:0.21641);