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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03171 phylogeny
for amino acid alignment


 
(((((((((((((O65485_ARATH/166-270,O24838_ACIAD/193-299),(((((IPNS_STRGR/180-286,IPNS_STRLP/185-290),IPNS_NOCLA/178-284),(IPNS_PENCH/180-288,IPNS_LYSLA/177-283)),(((CEFE_STRCL/155-267,CEFE_NOCLA/157-269),((Q48740_LYSLA/156-268,Q48741_LYSLA/156-268),CEFF_NOCLA/155-267)),EXPA_CEPAC/156-268)),(((Q9SD54_ARATH/205-302,(O23763_CUCMA/160-257,(((O60075_SCHPO/159-267,EFE_PSESJ/166-286),(O23518_ARATH/106-212,(Q9SN92_ARATH/149-250,Q9SNC8_ARATH/182-286))),(ISP7_SCHPO/255-353,(O82017_MALDO/154-255,Q9XI75_ARATH/152-254))))),((((((Q9XHR0_CITLA/215-314,Q39541_CUCMA/219-318),Q39111_ARATH/221-320),((Q40994_PEA/223-322,O04706_WHEAT/200-299),(Q9ZWQ1_LACSA/214-313,Q41366_SPIOL/216-315))),Q39112_ARATH/222-321),(((((((Q9XH70_PRUAR/219-318,(P93824_ARATH/208-308,P93821_ARATH/194-293)),Q43383_ARATH/210-310),(Q9SKK4_ARATH/207-307,O80850_ARATH/207-307)),(DV4H_CATRO/242-343,O80851_ARATH/209-311)),(ACCO3_LYCES/212-311,O24018_LYCES/213-312)),(((((Q9ZWQ0_LACSA/198-298,O24623_PEA/207-307),Q9ZWR7_LYCES/205-308),Q9ZT84_ARATH/201-301),Q9SVS8_ARATH/202-305),O24417_CUCMA/198-299)),(((Q9ZSA7_ARATH/195-294,((Q43640_SOLME/193-291,Q9XJ43_ATRBE/193-292),(Q40063_HORVU/185-284,Q40061_HORVU/184-283))),Q9ZQA5_ARATH/241-340),(((((LDOX_PERFR/214-313,LDOX_MAIZE/230-329),((FLS_CITUN/197-296,FLS_SOLTU/214-310),FLS_MATIN/151-250)),(O48631_PRUAR/201-301,Q9XIA5_ARATH/201-301)),(((Q9XIW9_ORYSA/202-301,O23478_ARATH/101-200),Q9SP53_DAUCA/192-293),(((O82126_CUCSA/153-255,((O22391_STELP/150-250,O65158_PHAVU/153-253),(Q39316_BRANA/156-256,O82127_CUCSA/152-253))),O81606_SORBI/159-259),(Q9ZUN4_ARATH/158-259,Q43419_CUCME/151-252)))),((Q9SRM3_ARATH/249-349,O80449_ARATH/202-302),(((Q9SB32_ARATH/204-304,Q9SHG1_ARATH/194-294),Q9SYM7_ARATH/207-307),Q40839_PICGL/148-248)))))),O49561_ARATH/146-245)),((((G2OX_PHACN/176-280,(O04162_9ROSI/165-271,G2OX1_ARATH/166-273)),(G2OX3_ARATH/176-278,G2OX2_ARATH/180-283)),G2OX1_PEA/172-276),G2OX2_PEA/171-285)))),((Q9ZTA1_ARATH/261-356,Q9ZTA2_ARATH/248-345),Q9ZTA3_ARATH/165-271)),(PLOD_CAEEL/639-730,(((PLOD1_HUMAN/636-727,PLOD3_HUMAN/647-738),Q9VTH0_DROME/630-721),PLOD2_MOUSE/646-737))),O23127_ARATH/995-1094),((((((Q09973_CAEEL/137-240,(Q11120_SCHPO/124-230,YEN9_YEAST/141-247)),(Y191_SYNY3/189-300,P74376_SYNY3/238-349)),((EGLN3_RAT/232-330,Q9VN98_DROME/150-248),O45918_CAEEL/468-566)),(Q9SQT3_ARATH/121-225,(((Q9SZS9_ARATH/194-287,Q9ZW86_ARATH/162-279),O81759_ARATH/113-221),((Q9VVQ6_DROME/391-499,(((Q9VA64_DROME/407-512,Q9VA65_DROME/403-510),Q9VA60_DROME/376-465),(P4HA1_MOUSE/411-519,(P4HA2_CAEEL/401-509,P4HA1_CAEEL/404-512)))),((((Q17985_CAEEL/167-277,Q9XUP0_CAEEL/168-278),Q9XWX4_CAEEL/398-508),Q9XWX4_CAEEL/148-255),Q84406_CHVP1/134-240))))),(Q13512_HUMAN/369-490,Q9R1J8_RAT/549-670)),((YBIX_ECOLI/78-175,PIUC_PSEAE/78-178),Y3529_BORPE/78-178))),((ALKB_ARATH/225-320,ALKB_SCHPO/182-272),(ALKB_CAUCR/117-218,ALKB_ECOLI/113-213))),(Q9SIE0_ARATH/194-314,(Q65652_9VIRU/750-841,(Q67704_9VIRU/645-738,(Q96806_9VIRU/647-736,(((O91632_9VIRU/762-870,(RRPO_ACLSA/748-836,((Q67654_9VIRU/681-772,O91901_9VIRU/781-877),Q64962_9VIRU/762-853))),RRPO_SHVX/653-743),(O71188_9CLOS/1601-1694,RRPO_PMV/599-690))))))),(Q9VKU5_DROME/73-179,Q9UT12_SCHPO/114-212)),(Q9U3P9_CAEEL/217-322,Q9W232_DROME/220-325)),Q9VL81_DROME/151-278),Q9SL49_ARATH/317-414),Q9ZU81_ARATH/255-351,Q9ZT92_ARATH/343-439);
(((((((((((((O65485_ARATH/166-270:0.42099,O24838_ACIAD/193-299:0.94541):0.41313,(((((IPNS_STRGR/180-286:0.00000,IPNS_STRLP/185-290:0.30398):0.18301,IPNS_NOCLA/178-284:0.11080):0.05383,(IPNS_PENCH/180-288:0.32113,IPNS_LYSLA/177-283:0.10031):0.13956):0.74558,(((CEFE_STRCL/155-267:0.18674,CEFE_NOCLA/157-269:0.05942):0.06079,((Q48740_LYSLA/156-268:0.10605,Q48741_LYSLA/156-268:0.21560):0.07691,CEFF_NOCLA/155-267:0.28923):0.03465):0.07540,EXPA_CEPAC/156-268:0.24352):0.86638):0.29754,(((Q9SD54_ARATH/205-302:0.57738,(O23763_CUCMA/160-257:0.64724,(((O60075_SCHPO/159-267:0.56024,EFE_PSESJ/166-286:0.78567):0.30445,(O23518_ARATH/106-212:0.50142,(Q9SN92_ARATH/149-250:0.14002,Q9SNC8_ARATH/182-286:0.18346):0.26735):0.32441):0.05699,(ISP7_SCHPO/255-353:0.47782,(O82017_MALDO/154-255:0.20039,Q9XI75_ARATH/152-254:0.11137):0.63920):0.23060):0.08006):0.07477):0.10640,((((((Q9XHR0_CITLA/215-314:0.11729,Q39541_CUCMA/219-318:0.22196):0.08729,Q39111_ARATH/221-320:0.10979):0.03564,((Q40994_PEA/223-322:0.22401,O04706_WHEAT/200-299:0.12343):0.03405,(Q9ZWQ1_LACSA/214-313:0.11532,Q41366_SPIOL/216-315:0.17474):0.01154):0.05759):0.04340,Q39112_ARATH/222-321:0.10690):0.25850,(((((((Q9XH70_PRUAR/219-318:0.19403,(P93824_ARATH/208-308:0.12912,P93821_ARATH/194-293:0.14212):0.04508):0.05112,Q43383_ARATH/210-310:0.21283):0.10315,(Q9SKK4_ARATH/207-307:0.23758,O80850_ARATH/207-307:0.09450):0.09797):0.06306,(DV4H_CATRO/242-343:0.30563,O80851_ARATH/209-311:0.19852):0.14814):0.12116,(ACCO3_LYCES/212-311:0.22419,O24018_LYCES/213-312:0.10448):0.11256):0.31442,(((((Q9ZWQ0_LACSA/198-298:0.05050,O24623_PEA/207-307:0.20251):0.03958,Q9ZWR7_LYCES/205-308:0.27514):0.01780,Q9ZT84_ARATH/201-301:0.24093):0.14069,Q9SVS8_ARATH/202-305:0.41178):0.15599,O24417_CUCMA/198-299:0.52687):0.13620):0.15202,(((Q9ZSA7_ARATH/195-294:0.22517,((Q43640_SOLME/193-291:0.25879,Q9XJ43_ATRBE/193-292:0.41056):0.15339,(Q40063_HORVU/185-284:0.17123,Q40061_HORVU/184-283:0.29156):0.43027):0.11458):0.09306,Q9ZQA5_ARATH/241-340:0.42226):0.05670,(((((LDOX_PERFR/214-313:0.11187,LDOX_MAIZE/230-329:0.24485):0.17803,((FLS_CITUN/197-296:0.06873,FLS_SOLTU/214-310:0.20877):0.05653,FLS_MATIN/151-250:0.40532):0.15641):0.25524,(O48631_PRUAR/201-301:0.21345,Q9XIA5_ARATH/201-301:0.15849):0.33782):0.10297,(((Q9XIW9_ORYSA/202-301:0.12770,O23478_ARATH/101-200:0.16676):0.22502,Q9SP53_DAUCA/192-293:0.41401):0.03728,(((O82126_CUCSA/153-255:0.08515,((O22391_STELP/150-250:0.29094,O65158_PHAVU/153-253:0.10908):0.02668,(Q39316_BRANA/156-256:0.12220,O82127_CUCSA/152-253:0.12704):0.10853):0.05103):0.06773,O81606_SORBI/159-259:0.24777):0.09744,(Q9ZUN4_ARATH/158-259:0.13716,Q43419_CUCME/151-252:0.11939):0.18116):0.31175):0.09860):0.04014,((Q9SRM3_ARATH/249-349:0.13718,O80449_ARATH/202-302:0.15626):0.23104,(((Q9SB32_ARATH/204-304:0.09154,Q9SHG1_ARATH/194-294:0.17901):0.05053,Q9SYM7_ARATH/207-307:0.12640):0.15585,Q40839_PICGL/148-248:0.31226):0.08566):0.08801):0.06222):0.11648):0.12281):0.07692,O49561_ARATH/146-245:0.41065):0.09663):0.07116,((((G2OX_PHACN/176-280:0.09606,(O04162_9ROSI/165-271:0.09171,G2OX1_ARATH/166-273:0.17239):0.06484):0.16901,(G2OX3_ARATH/176-278:0.24305,G2OX2_ARATH/180-283:0.04428):0.06377):0.13999,G2OX1_PEA/172-276:0.18507):0.13409,G2OX2_PEA/171-285:0.20808):0.46846):0.07551):0.06725):0.08022,((Q9ZTA1_ARATH/261-356:0.21680,Q9ZTA2_ARATH/248-345:0.23471):0.24422,Q9ZTA3_ARATH/165-271:0.22092):0.36382):0.79695,(PLOD_CAEEL/639-730:0.10826,(((PLOD1_HUMAN/636-727:0.15814,PLOD3_HUMAN/647-738:0.14376):0.03228,Q9VTH0_DROME/630-721:0.18809):0.15686,PLOD2_MOUSE/646-737:0.42430):0.22191):0.53850):0.48782,O23127_ARATH/995-1094:0.99891):0.12528,((((((Q09973_CAEEL/137-240:0.70081,(Q11120_SCHPO/124-230:0.29345,YEN9_YEAST/141-247:0.24854):0.49521):0.42276,(Y191_SYNY3/189-300:0.23502,P74376_SYNY3/238-349:0.26607):0.53937):0.23235,((EGLN3_RAT/232-330:0.24407,Q9VN98_DROME/150-248:0.12418):0.14609,O45918_CAEEL/468-566:0.42282):0.65234):0.37178,(Q9SQT3_ARATH/121-225:0.22796,(((Q9SZS9_ARATH/194-287:0.70417,Q9ZW86_ARATH/162-279:0.34930):0.08319,O81759_ARATH/113-221:0.78483):0.04298,((Q9VVQ6_DROME/391-499:0.70226,(((Q9VA64_DROME/407-512:0.12172,Q9VA65_DROME/403-510:0.23979):0.16114,Q9VA60_DROME/376-465:0.69682):0.04692,(P4HA1_MOUSE/411-519:0.17473,(P4HA2_CAEEL/401-509:0.09890,P4HA1_CAEEL/404-512:0.24725):0.15700):0.09525):0.09148):0.17739,((((Q17985_CAEEL/167-277:0.36159,Q9XUP0_CAEEL/168-278:0.16000):0.13384,Q9XWX4_CAEEL/398-508:0.23186):0.24580,Q9XWX4_CAEEL/148-255:0.44594):0.11188,Q84406_CHVP1/134-240:0.80479):0.18252):0.22417):0.04645):0.79981):0.18198,(Q13512_HUMAN/369-490:0.26805,Q9R1J8_RAT/549-670:0.15858):0.96444):0.23501,((YBIX_ECOLI/78-175:0.30406,PIUC_PSEAE/78-178:0.16415):0.13238,Y3529_BORPE/78-178:0.28042):0.80667):0.38435):0.78737,((ALKB_ARATH/225-320:0.52865,ALKB_SCHPO/182-272:0.54557):0.57921,(ALKB_CAUCR/117-218:0.62830,ALKB_ECOLI/113-213:0.33259):0.20050):0.32036):0.13052,(Q9SIE0_ARATH/194-314:0.60495,(Q65652_9VIRU/750-841:0.61468,(Q67704_9VIRU/645-738:0.43762,(Q96806_9VIRU/647-736:0.35839,(((O91632_9VIRU/762-870:0.58866,(RRPO_ACLSA/748-836:0.62646,((Q67654_9VIRU/681-772:0.51954,O91901_9VIRU/781-877:0.47143):0.19124,Q64962_9VIRU/762-853:0.47976):0.09082):0.04185):0.14132,RRPO_SHVX/653-743:0.37995):0.03009,(O71188_9CLOS/1601-1694:0.37989,RRPO_PMV/599-690:0.51389):0.13294):0.16973):0.07980):0.08496):0.56753):0.16903):0.28545,(Q9VKU5_DROME/73-179:0.95742,Q9UT12_SCHPO/114-212:1.00091):0.24113):0.21807,(Q9U3P9_CAEEL/217-322:0.46525,Q9W232_DROME/220-325:0.15624):0.14675):0.31594,Q9VL81_DROME/151-278:1.30612):0.47208,Q9SL49_ARATH/317-414:0.52132):0.47719,Q9ZU81_ARATH/255-351:0.00000,Q9ZT92_ARATH/343-439:0.21630);