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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02368 alignment
(45 sequences with 108 aa)


VMTV_LAMBD/160-241 AATGMTVTPA.....-STSVVKGQSTTLTVAFQPEGVTD----..KSFRAVS.ADKTKATVSV--.....SGMTITV...NGVA..AGKVNIPVVSGN.GEFAAVAEI
O64327_BPN15/161-242 AVTGISLDKS.....-TAAVAVAATTQLVVSVLPASASD----..KSFRVAS.SDPSKATVTV--.....SGNTLTV...TGVA..AGTVEIIVMSND.GNFVAICKV
Q45095_BACCI/696-774 PVTGVTVNPT.....-TAQVEVGQSVQLNASVAPSNATN----..KQVTWSV.SGSSIASVS---.....--PNGLV...TGLA..QGTTTVTATTAD.GNKAASATI
O68736_YERPE/134-212 SVESVTVTPD.....-STSVEKGKSVKLRVDVQPSNATN----..KKVTWTS.KNSDKATVD---.....--QNGNV...AGVA..VGTATIEVVSQD.GSHKATATV
O68736_YERPE/51-128 FTQSVTITPT.....-APSVLVGKTVQLSAGITMSKSAD----..-SFTWTS.DNDRVATVS---.....--GTGLV...TGVT..PGKVKITATDKQ.TQLSASVEV
O68731_YERPE/164-242 PVKTVSISPE.....-SPEVKAGETVQLTAQITPADAGD----..KTGVWES.DNQEKATVD---.....--QTGLV...RGVA..EGSANISFTSNS.GGKKATKAV
O80052_9CAUD/235-311 EVTSVNVTDE.....-QVTVKVDATKQLSATTEPSG-------..QKVTYAVtEGQRYASVT---.....--STGLV...KGLA..EGNATVTATAGK.QTDTVQITV
VCAB_BPT3/351-426 DPTGVTLSQK.....-TMTLVEGASRALTGTVQPSDAN-----..QSLSWSS.SAEDVAVWE---.....---AGKV...VAKG..VGTADITATTSN.-GLIASCKV
CGKA_ALTCA/316-394 AVNSVQLSAA.....-KQTLRKGQSTTLESTVLPNCATN----..KKVIYSS.SNKNVATVN---.....--SAGVV...KAKN..KGTATITVKTKN.KGKIDKLTI
O68831_BACFO/799-878 GPAFVALDYT.....-ELTLPEGASQRLVVTTYPKDADIN---..RDVKWYS.SNNDIATVS---.....--RDGTV...SALA..PGRADITVVANV.GGQQTACRV
FRUA_STRMU/924-1003 PVAMNTTTAK.....-ELALQVGQSQDLQVYLAPASVR-----..QDVEWTI.SDPSLVRTS---.....--QKGNVlhlTAVK..KGKLTITAISKE.-NPSLSKTF
Q45664_BACST/293-377 VQDAVTVALN.....-NSSLKVGEES--GLTVKDQDGKDVVG-..AKVELTS.SNTNIVVVSSGE....vSVSAAKV...TAVK..PGTADVTAKVTL.-PDGVVLTN
O68840_BACST/554-644 VLETIAVDST.....-GVSVAKGQKATFKVTLKDQYGNKFT--..GNVNVTS.DKTETATVSVSNsgigqSEYTVTV...NGVA..EGSTTITIKSGT.KEVKVPVNV
O05734_LEPIN/112-197 VLTSIQINPV.....-NPSLAKGLTQKFSATGIYSDNSNKDIT..SAVTWFS.SDSSIATISNAQ.....-KNQGNA...YGAA..TGATDIKATFGK.-VSSPVSTL
O05734_LEPIN/203-289 KLVEIQITPA.....-AASKAKGLTERFKATGIFTDNSNSDIT..NQVTWNS.SNTDILTVSNTN.....-AKRGLG...STLK..QGTVKVTASMGG.IEDSVDFTV
O05734_LEPIN/23-108 ALTSIEVSPV.....-LPSIAKGLTQKFTAIGIFTDNSKKDIT..DQVTWNS.-SSAIVSVSNLD.....-DNKGLG...KAHA..VGDTTITATLGK.VSGKTWLTV
O05734_LEPIN/748-834 GIVNITISLS.....-SISKTKGSTHQFKATGKFENGAEIDLT..ELVTWSS.SNPTVVSISNVD.....-DERGLA...TALS..VGSSKISVDYNS.ISSSIDFEV
O05734_LEPIN/656-741 LLRYIMITPS.....-YAGIEKGYTKQFSAIGTYSDQSTKDLT..EDVTWFS.SNPSSVVIENTP.....-GKKGLA...FASE..LGEPDITVFYDH.-HTQSSYTP
SLAP_BACCI/1114-1195 AVKALKLDRG.....-TYSMNKGESLRLAVTAEYSSSSTDVT-..GQAAYAS.LDPAVVSVD---.....--ATGRI...TALR..EGSGTVQATYEG.HTATARVSV
O31643_BACSU/35-114 EVKNISISPT.....-HVIKIQDYNLPLKVGETYSVKNN----..SATRYWT.DNQKVAEVD---.....--QNGLV...TAKS..KGKATITLFKGTaVFGKVYVTV
O94980_HUMAN/107-188 APQQIEVFPPfrlmpRKVTLLIGATMQVTSEGGPQPQSN----..--ILFSI.SNESVALVS---.....--AAGLV...QGLA..IGNGTVSGLVQA.-VDAETGKV
GP21_RAT/1077-1153 VFPPFRLIPR.....-KVTLIIGAMIQITSEGGPQPQSN----..--ILFSI.NNESVAAVS---.....--SAGLV...RGLM..VGNGSVLGVVQAvDAETGKVI-
SLA1_BACAN/402-481 DFTSKDFKQN.....-NKVYEGDNAYVQVELKDQFNAVTT---..GKVEYES.LNTEVAVVD---.....-KATGKV...TVLS..AGKAPVKVTVKD.-SKGKELVS
Q9ZES5_BACTU/397-482 AAEKADFTSKdfkqnDKVYEGDNVSVQVELKDQFNNVVNN---..VKAEYES.LNTEVAVVD---.....-KATGKV...TVLS..AGKAPVKVTVKD.-SKGKELVS
O68840_BACST/472-549 DKDGNQISSG.....-TLTLTAKFKDQYGNELTGKVAGT----..-DYTFES.LNPEVLVVA---.....--PDGSV...TPIV..PGTALVKVKYGE.VTKTIPVTV
P91495_CAEEL/436-513 IVDPVRIVPP.....--VIYLPFVSEKRSQIDLTATGGS----..GLFEWTS.EDGHVATVDL--.....--LTGRM...TANS..LGSTKVKATDKR.-NDQLRDIA
P77067_ECOLI/757-835 DGDKVTVIGT.....GITGALPKNWLQYGQVKLQATGGN----..GKYTWKS.SNTKIASVD---.....--NSGVI...TLNE..KGSATITVVSGD.-NQSATYTI
P77068_ECOLI/100-178 DGDKVTVIGT.....GITGALPKNWLQYGQVKLQATGGN----..GKYTWKS.SNTKIASVD---.....--NSGVI...TLNE..KGSATITVVSGD.-NQSATYTI
Q47018_ECOLI/757-835 DGDKVTVIGT.....GITGALPKNWLQYGQVKLQATGGN----..GKYTWKS.SNTKIASVD---.....--NSGVI...TLNE..KGSATITVVSGD.-NQSATYTI
P77628_ECOLI/100-178 DGDKVTVIGT.....GITGALPKNWLQYGQVKLQATGGN----..GKYTWKS.SNTKIASVD---.....--NSGVI...TLNE..KGSATITVVSGD.-NQSATYTI
EAE_CITFR/754-832 DGNKVTVIGT.....GVTGSLPKNWLQYGQVKLQATGGN----..GKYTWKS.SNTKIASVD---.....--NSGVI...TLNE..KGSATITVVSGD.-NQSATYTI
O86192_ECOLI/100-178 DSNKVTVIGT.....GVTGSLPKNWLQYGQAKLQATGGN----..GKYTWKS.SDTKIASVD---.....--SSGVI...TLNG..KGSTIITVVSGD.-NQSATYTI
O06896_ECOLI/758-836 DSNKVTVIGT.....GVTGSLPKNWLQYGQAKLQATGGN----..GKYTWKS.SDTKIASVD---.....--SSGVI...TPEW..EREYHNYGRICD.-NQSATYTI
EAEA_HAFAL/98-177 DNGNVEIVGT.....GAKGKLPNVWLQYGQVNLKANGGN----..GKYTWYS.ANPAIASVDP--.....--SSGQV...TLKD..KGETTITVVSGD.-KQTAIYTI
EAE_ECO27/757-836 DDGNIEIVGT.....GVKGKLPTVWLQYGQVNLKASGGN----..GKYTWRS.ANPAIASVD---.....-ASSGQV...TLKE..KGTTTISVISSD.-NQTATYTI
EAE_ECO11/759-837 IDNKVDILGK.....NVTGDLPNIWLQYGQFKLKVSGGN----..GTYSWHS.ENTNIATVD---.....--ESGKV...TLKG..KGTAVINVTSGD.-KQTVSYTI
Q47169_ECOLI/78-156 IDNKVDILGK.....NVTGDLPNIWLQYGQFKLKVSGGN----..GTYSWHS.ENTNIATVD---.....--ESGKV...TLKG..KGTAVINVTSGD.-KQTVSYTI
EAE_ECO57/758-836 IDNKVDIIGN.....NVRGELPNIWLQYGQFKLKASGGD----..GTYSWYS.ENTSIATVD---.....--ASGKV...TLNG..KGSVVIKATSGD.-KQTVSYTI
O52620_ECOLI/761-835 KVTVIGTGIT.....-GALQRTGYSM-VRLSYRQQGA------..MKYTWKS.SNTKIASVD---.....--NSGVI...TLNE..KGSATITVVSGD.-NQSATYTI
Q45664_BACST/405-495 PQNTVAFNKAe....KVTSMFAGETKTVAMYDTKNGDPETKPVdfKDATVRS.LNPIIATAAIN-.....-GSELLV...TANAgqSGKASFEVTFKD.-NTKRTFTV
HEAD_BPPZA/348-429 AVTQVIVSPN.....-IAAVKQGGKQQFTAYVRATDGKD----..HKVVWSV.EGGSTGTAIT--.....GDGLLSV...SGNE..ENQLTVKATVDI.GTEDKPNLV
HEAD_BPPH2/348-429 AVTQVIVSPN.....-IAAVKQGGQQQFTAYVRATNAKD----..HKVVWSV.EGGSTGTAIT--.....GDGLLSV...SGNE..DNQLTVKATVDI.GTEDKPKLV
HEAD_BPB03/349-430 AVTQVIVSPA.....-IASVKQGKSQAFTAYVRATDDKE----..HEVVWSV.DGGSTGTSIS--.....SDGVLTV...AANE..TNQLTVKATVDI.GTADEPKPV
Q37899_BPBF2/375-456 AVTAITVKSAg....NVATLNRSATLQMSVEVTPSSAKN----..KEVTWAI.TAGDAATIN---.....ATGLLTA...DASK..TGAVTVEATAKD.-GSGVKGTK
O68840_BACST/651-738 ANYQIKVLDDgkidkSATESPANNDVQLKVYAVDANGNIVGDI.tNDVTITSeATDTNGVIV---.....--NASKS...TANG..-DTVYVITDNGS.KKVGKET--