EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01517 - HDV_ag)
Hepatitis delta virus delta antigen
(Pfam reference: accession no. PF01517)
(Interpro reference: accession no. IPR002506)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
4 sequences @ 196 aa
(ave. pairwise identity: 0.70)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 0.82)
nucleotides
(available for above)
3 sequences @ 588 bp
(ave. pairwise identity: 0.75)
New Hampshire format
(total tree length: 0.49)
amino acids, restricted set
(corresp. to available nt seqs)
3 sequences @ 196 aa
(ave. pairwise identity: 0.67)
New Hampshire format
(total tree length: 0.67)