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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01399 phylogeny
for nucleotide alignment


 
(((((((((((((((CSN7_ARATH/60-156,(CSN7_DROME/69-164,(CSN7B_MOUSE/61-156,CSN7A_MOUSE/61-156))),(Q00648_EMENI/68-162,CSN7B_SCHPO/241-344)),CSN7A_SCHPO/35-132),((Q9LF21_ARATH/257-359,O60735_HUMAN/235-336),Q9V6X8_DROME/236-337)),((((Q22253_CAEEL/240-344,PSD13_HUMAN/231-335),Q9V469_DROME/236-340),(RPN9_YEAST/249-352,RPN9_SCHPO/236-340)),Q9U1C9_LEIMA/266-371)),(((CSN3_HUMAN/258-362,CSN3_DROME/274-378),Q40112_LYCCI/70-174),CSN3_CAEEL/338-440)),((((PSD31_ARATH/311-418,(PSD3_HUMAN/358-462,PSD3_ANOGA/321-425)),PSD3_CAEEL/326-434),RPN3_YEAST/343-447),((Q9Y820_SCHPO/292-412,(YE18_SCHPO/302-413,(YPIA_CAEEL/289-400,(Q9NUK6_HUMAN/331-442,Q9VTL1_DROME/275-386)))),((O96149_PLAF7/320-443,YJ54_YEAST/298-415),Q08231_YEAST/297-428)))),(YIH1_YEAST/258-362,(((((Q9V3V4_DROME/285-389,((PSD11_HUMAN/284-388,O81694_ARATH/280-384),(RPN6_SCHPO/283-387,RPN6_YEAST/297-401))),Q20938_CAEEL/301-405),YMJ5_CAEEL/331-435),(((CSN2_DROME/310-414,(CSN2_HUMAN/309-413,CSN2_ARATH/305-409)),CSN2_CAEEL/309-413),CSN2_SCHPO/311-415)),(((IF36_DROME/284-389,(IF36_CAEEL/288-394,Q9C5Z3_ARATH/288-404)),Q9NEE7_LEIMA/282-387),(((((CSN1_ARATH/293-397,Q9FVN4_ORYSA/292-396),(CSN1_HUMAN/304-408,CSN1_DROME/353-457)),CSN1_SCHPO/262-366),((O65072_PICMA/97-201,(((RPN7_SCHPO/268-373,RPN7_YEAST/287-392),PSD6_MOUSE/254-358),PSD6_DROME/254-358)),PSD6_CAEEL/274-379)),CSN1_CAEEL/393-497))))),CSN4_SCHPO/172-353),(((Q9FGF7_ARATH/377-487,(PSD12_HUMAN/300-417,(Q9V3Z4_DROME/347-458,(RPN5_YEAST/294-404,RPN5_SCHPO/288-399)))),Q9N9T8_LEIMA/324-430),(CSN4_CAEEL/277-375,(CSN4_MOUSE/264-363,((CSN4_ARATH/263-362,Q9C467_EMENI/265-371),P91586_CIOIN/265-364))))),(IF3A_ARATH/372-510,IF3A_HUMAN/365-495)),(Q9Z4Q5_APPPP/12-94,Y1654_METJA/96-223)),((Q9V859_DROME/678-812,IF38_HUMAN/712-846),IF38_CAEEL/669-803)),IF38_MEDTR/663-793),IF38_ARATH/643-773,Q9LIL2_ARATH/596-727);
(((((((((((((((CSN7_ARATH/60-156:0.49198,(CSN7_DROME/69-164:0.31928,(CSN7B_MOUSE/61-156:0.18120,CSN7A_MOUSE/61-156:0.30712):0.05197):0.17829):0.22242,(Q00648_EMENI/68-162:0.54756,CSN7B_SCHPO/241-344:0.56538):0.14922):0.11234,CSN7A_SCHPO/35-132:0.78432):0.08309,((Q9LF21_ARATH/257-359:0.51708,O60735_HUMAN/235-336:0.32144):0.14721,Q9V6X8_DROME/236-337:0.27817):0.22434):0.10008,((((Q22253_CAEEL/240-344:0.48995,PSD13_HUMAN/231-335:0.31717):0.09708,Q9V469_DROME/236-340:0.26270):0.08112,(RPN9_YEAST/249-352:0.38173,RPN9_SCHPO/236-340:0.47477):0.16605):0.05970,Q9U1C9_LEIMA/266-371:0.56797):0.24319):0.24639,(((CSN3_HUMAN/258-362:0.17643,CSN3_DROME/274-378:0.36657):0.20018,Q40112_LYCCI/70-174:0.16109):0.30163,CSN3_CAEEL/338-440:0.76854):0.14169):0.05492,((((PSD31_ARATH/311-418:0.29396,(PSD3_HUMAN/358-462:0.20315,PSD3_ANOGA/321-425:0.26914):0.12832):0.08772,PSD3_CAEEL/326-434:0.42508):0.07441,RPN3_YEAST/343-447:0.40787):0.22130,((Q9Y820_SCHPO/292-412:0.42486,(YE18_SCHPO/302-413:0.53460,(YPIA_CAEEL/289-400:0.27314,(Q9NUK6_HUMAN/331-442:0.33276,Q9VTL1_DROME/275-386:0.35319):0.11609):0.21078):0.07074):0.09503,((O96149_PLAF7/320-443:0.46349,YJ54_YEAST/298-415:0.87773):0.24259,Q08231_YEAST/297-428:0.81033):0.06628):0.34259):0.16539):0.08108,(YIH1_YEAST/258-362:0.94797,(((((Q9V3V4_DROME/285-389:0.21172,((PSD11_HUMAN/284-388:0.30174,O81694_ARATH/280-384:0.24739):0.07156,(RPN6_SCHPO/283-387:0.28940,RPN6_YEAST/297-401:0.29874):0.12430):0.05795):0.07110,Q20938_CAEEL/301-405:0.33325):0.17559,YMJ5_CAEEL/331-435:0.38877):0.30876,(((CSN2_DROME/310-414:0.21421,(CSN2_HUMAN/309-413:0.12186,CSN2_ARATH/305-409:0.40361):0.12049):0.16668,CSN2_CAEEL/309-413:0.40886):0.04472,CSN2_SCHPO/311-415:0.47507):0.16610):0.06466,(((IF36_DROME/284-389:0.16160,(IF36_CAEEL/288-394:0.26606,Q9C5Z3_ARATH/288-404:0.32998):0.09916):0.35350,Q9NEE7_LEIMA/282-387:0.30417):0.45010,(((((CSN1_ARATH/293-397:0.21853,Q9FVN4_ORYSA/292-396:0.17288):0.21283,(CSN1_HUMAN/304-408:0.19221,CSN1_DROME/353-457:0.14400):0.15113):0.12031,CSN1_SCHPO/262-366:0.78238):0.14674,((O65072_PICMA/97-201:0.28241,(((RPN7_SCHPO/268-373:0.37762,RPN7_YEAST/287-392:0.43312):0.16346,PSD6_MOUSE/254-358:0.21900):0.05703,PSD6_DROME/254-358:0.29803):0.09939):0.19077,PSD6_CAEEL/274-379:0.33656):0.31504):0.09904,CSN1_CAEEL/393-497:0.56492):0.15074):0.08945):0.11869):0.08369):0.05425,CSN4_SCHPO/172-353:0.70728):0.14094,(((Q9FGF7_ARATH/377-487:0.36249,(PSD12_HUMAN/300-417:0.33799,(Q9V3Z4_DROME/347-458:0.47547,(RPN5_YEAST/294-404:0.42267,RPN5_SCHPO/288-399:0.38311):0.13686):0.04408):0.12318):0.12922,Q9N9T8_LEIMA/324-430:0.57517):0.28358,(CSN4_CAEEL/277-375:0.38075,(CSN4_MOUSE/264-363:0.14509,((CSN4_ARATH/263-362:0.33733,Q9C467_EMENI/265-371:0.38260):0.08051,P91586_CIOIN/265-364:0.21481):0.07627):0.24918):0.19666):0.10254):0.01576,(IF3A_ARATH/372-510:0.55621,IF3A_HUMAN/365-495:0.37024):0.63473):0.06504,(Q9Z4Q5_APPPP/12-94:0.64513,Y1654_METJA/96-223:0.43357):0.28108):0.63896,((Q9V859_DROME/678-812:0.22550,IF38_HUMAN/712-846:0.16322):0.14559,IF38_CAEEL/669-803:0.30567):0.24064):0.04065,IF38_MEDTR/663-793:0.20408):0.12015,IF38_ARATH/643-773:0.02047,Q9LIL2_ARATH/596-727:0.16503);