EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01261 - AP_endonuc_2)
Xylose isomerase-like TIM barrel
(Pfam reference: accession no. PF01261)
(Interpro reference: accession no. IPR001719)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
317 sequences @ 490 aa
(ave. pairwise identity: 0.18)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 221.61)
nucleotides
(available for above)
313 sequences @ 1470 bp
(ave. pairwise identity: 0.35)
New Hampshire format
(total tree length: 0.00)
amino acids, restricted set
(corresp. to available nt seqs)
313 sequences @ 490 aa
(ave. pairwise identity: 0.18)
New Hampshire format
(total tree length: 220.53)