EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01101 - HMG14_17)
HMG14 and HMG17
(Pfam reference: accession no. PF01101)
(Interpro reference: accession no. IPR000079)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
5 sequences @ 107 aa
(ave. pairwise identity: 0.58)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 1.64)
nucleotides
(available for above)
2 sequences @ 321 bp
(ave. pairwise identity: 0.64)
New Hampshire format
(total tree length: 0.51)
amino acids, restricted set
(corresp. to available nt seqs)
2 sequences @ 107 aa
(ave. pairwise identity: 0.64)
New Hampshire format
(total tree length: 0.59)