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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01068 phylogeny
for amino acid alignment


 
dependent DNA ligase domain
((O68776_YERPE/73-267:1.22026,((DNLI_BPT4/135-367:1.29278,O41026_CHVP1/6-186:1.09739):0.14472,(((DNLI_ASFB7/126-318:0.88252,DNLI_HAEIN/35-189:1.11207):0.26330,((O58234_PYRHO/76-247:0.34047,O67191_AQUAE/62-235:0.54195):0.26276,((O29409_ARCFU/80-251:0.56705,Y414_METJA/85-260:0.39363):0.09914,O27289_METTH/82-255:0.44340):0.11211):1.32675):0.12876,((((((DNLI_CANAL/259-494:0.37694,DNL4_YEAST/256-466:0.55630):0.25977,O74833_SCHPO/268-476:0.61561):0.10995,(Q9VYA5_DROME/258-461:0.76814,DNL4_HUMAN/181-384:0.51671):0.21031):0.41924,(Q9VG84_DROME/147-341:0.37227,(((DNLI_VACCC/206-399:0.34731,(DNLI_FOWPV/211-405:0.33548,Q90026_9POXV/212-406:0.52710):0.11985):0.09975,DNL3_HUMAN/396-590:0.22191):0.15711,DNLI_NPVLD/173-367:0.62519):0.03278):0.42837):0.21239,((((O69698_MYCTU/11-201:0.28611,Q9XAM3_STRCO/11-197:0.25270):0.76195,Y938_MYCTU/460-637:0.69895):0.14285,(O28549_ARCFU/10-196:0.68472,O34398_BACSU/13-208:1.03710):0.17849):0.26003,(((DNLI_PYRAE/226-424:0.36032,(DNLI_AQUAE/225-424:0.43652,(DNLI_AERPE/239-439:0.37583,DNLI_ACIAM/236-436:0.25563):0.03673):0.10295):0.24880,(((DNLI_ARCFU/225-419:0.35662,(DNLI_METJA/226-440:0.33719,DNLI_PYRFU/224-422:0.31837):0.12716):0.05586,P95096_MYCTU/186-380:0.83936):0.04359,DNLI_METTF/227-425:0.53150):0.19575):0.20819,((DNLI_YEAST/393-598:0.33240,DNLI_SCHPO/390-595:0.30580):0.03993,(((DNLI_CAEEL/337-539:0.36544,Q9W1H4_DROME/369-573:0.25811):0.09564,(DNL1_HUMAN/542-746:0.11661,DNL1_XENLA/695-899:0.12691):0.10040):0.13573,DNLI_ARATH/418-622:0.26730):0.10770):0.42829):0.15547):0.13061):0.06128,(O31917_BACSU/5-183:0.81915,Q9PYQ5_GVXN/195-361:0.75334):0.14914):0.22967):0.23344):0.21111):0.91504,DNLI_BPT7/8-240:0.16963,DNLI_BPT3/8-246:0.19524);