EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01023 - S_100)
S-100/ICaBP type calcium binding domain
(Pfam reference: accession no. PF01023)
(Interpro reference: accession no. IPR001751)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
27 sequences @ 44 aa
(ave. pairwise identity: 0.40)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 12.79)
nucleotides
(available for above)
21 sequences @ 132 bp
(ave. pairwise identity: 0.51)
New Hampshire format
(total tree length: 6.82)
amino acids, restricted set
(corresp. to available nt seqs)
21 sequences @ 44 aa
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 10.91)