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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00969 phylogeny
for nucleotide alignment


 
((((((((((((((((((2B17_HUMAN/42-116,2B32_HUMAN/42-116),((Q30217_HUMAN/8-82,O19287_MACMU/6-80),O19288_MACMU/6-80)),((Q30513_GALMO/8-81,(HB2K_HUMAN/42-116,Q30661_MACMU/6-80)),O19279_MACMU/6-80)),(O19291_MACMU/6-80,(O19298_9PRIM/6-79,(Q30856_OTOGA/8-82,Q30858_OTOGA/8-82)))),(((O19382_FELCA/5-79,(O19364_FELCA/5-79,O19396_FELCA/5-79)),O19378_FELCA/5-79),((O19246_CANFA/5-79,O19253_CANFA/6-79),HB2D_CANFA/42-116))),((Q30461_HORSE/4-78,(((((Q30282_BOVIN/5-79,P79966_CAPAE/4-78),Q30812_SHEEP/4-78),O18945_BOSIN/5-79),O19211_CAPHI/8-82),O19229_DAMDA/5-79)),((O19231_DELLE/5-79,O19236_DELLE/5-79),O19220_RANTA/5-79))),((((O19218_MONDO/42-116,(Q30763_MACRG/27-101,Q30765_MACRG/42-116)),((((((((Q08609_CYPFR/25-100,Q31334_AULHA/8-83),(Q31514_POERE/27-102,(((Q08606_AULHA/25-100,Q08608_AULHA/24-99),((Q31459_MORSA/28-103,Q31463_MORSA/28-103),Q31462_MORSA/28-103)),(Q08607_CYPFR/25-100,Q08611_CYPFR/23-98)))),(Q31590_SALSA/27-102,(Q31589_SALSA/41-115,Q31487_ONCMY/30-105))),(((Q31354_BRARE/29-104,Q31369_BRARE/31-106),Q31377_CYPCA/25-100),(Q31358_BRARE/26-101,(Q31375_CYPCA/31-106,Q31376_CYPCA/25-100)))),(((Q31431_9PASS/37-110,Q31432_9PASS/37-111),(((Q31339_AGEPH/16-90,Q31341_AGEPH/16-90),Q31392_CARME/16-90),(Q31391_CARME/16-90,Q31390_CARME/16-90))),(Q31314_APHCE/16-90,((Q31311_APHCE/16-90,Q31316_APHCE/16-90),(Q31315_APHCE/16-90,Q31320_APHCE/16-90))))),((O19492_CHICK/8-82,((O19491_CHICK/8-82,O19494_CHICK/8-82),(O19493_CHICK/8-82,O19500_CHICK/8-82))),O19495_CHICK/8-82)),Q30854_OTOGA/8-82),(Q30764_MACRG/42-116,((Q31244_MUSSA/8-81,Q95399_BOVIN/8-82),((P79597_XENLA/33-107,(Q06743_XENLA/41-115,(Q06745_XENLA/42-116,Q06742_XENLA/41-115))),((O35424_MOUSE/39-113,Q30827_SHEEP/39-113),2DOB_HUMAN/39-113)))))),((O02908_MUSMA/9-83,(HB21_MOUSE/40-114,((O02896_MOUSE/9-83,O02877_MUSCO/9-83),O02879_MUSCR/9-83))),(O02909_MUSPL/9-83,(HB2D_RAT/40-114,Q31270_RAT/21-95)))),(Q30540_LORTA/8-82,Q30539_LORTA/8-82))),P79466_BOVIN/8-82),(HB2P_RABIT/43-113,(O19274_SAGOE/6-78,HB2P_HUMAN/42-114))),((Q31140_MOUSE/8-80,(Q31136_MOUSE/8-80,Q31292_9MURI/7-79)),(HB2A_MOUSE/40-114,(HB21_SPAEH/42-114,HB2A_RAT/8-82)))),HB2C_PIG/45-119),Q30458_HORSE/41-115),((P79447_BOVIN/5-79,P79442_BOVIN/5-79),(P79455_BOVIN/5-78,P79456_BOVIN/5-79))),(((Q30338_CERAE/5-79,Q29922_HUMAN/8-82),(HB22_HUMAN/45-119,Q30554_MACAR/5-79)),(Q30694_MACMU/5-79,O02712_MACMU/5-79))),HB21_HUMAN/45-119),Q29783_HUMAN/8-82),(2DMB_HUMAN/27-106,Q30262_BOVIN/26-105)),P70238_MOUSE/27-106,Q31253_RAT/9-88);
((((((((((((((((((2B17_HUMAN/42-116:0.07733,2B32_HUMAN/42-116:0.04289):0.01778,((Q30217_HUMAN/8-82:0.53154,O19287_MACMU/6-80:0.03473):0.03780,O19288_MACMU/6-80:0.03701):0.01508):0.00483,((Q30513_GALMO/8-81:0.08476,(HB2K_HUMAN/42-116:0.06737,Q30661_MACMU/6-80:0.03842):0.01981):0.01144,O19279_MACMU/6-80:0.14784):0.00822):0.00692,(O19291_MACMU/6-80:0.07079,(O19298_9PRIM/6-79:0.09818,(Q30856_OTOGA/8-82:0.05305,Q30858_OTOGA/8-82:0.07281):0.02802):0.01089):0.02572):0.02573,(((O19382_FELCA/5-79:0.05121,(O19364_FELCA/5-79:0.08338,O19396_FELCA/5-79:0.08103):0.02310):0.03675,O19378_FELCA/5-79:0.10036):0.02470,((O19246_CANFA/5-79:0.12343,O19253_CANFA/6-79:0.01753):0.04807,HB2D_CANFA/42-116:0.05740):0.05257):0.02199):0.02312,((Q30461_HORSE/4-78:0.12657,(((((Q30282_BOVIN/5-79:0.07128,P79966_CAPAE/4-78:0.05130):0.01532,Q30812_SHEEP/4-78:0.07514):0.00626,O18945_BOSIN/5-79:0.05943):0.01198,O19211_CAPHI/8-82:0.05252):0.01868,O19229_DAMDA/5-79:0.05323):0.01893):0.01571,((O19231_DELLE/5-79:0.07392,O19236_DELLE/5-79:0.03277):0.07409,O19220_RANTA/5-79:0.08596):0.01865):0.00861):0.01188,((((O19218_MONDO/42-116:0.14454,(Q30763_MACRG/27-101:0.15404,Q30765_MACRG/42-116:0.06486):0.02670):0.01745,((((((((Q08609_CYPFR/25-100:0.08862,Q31334_AULHA/8-83:0.09458):0.03582,(Q31514_POERE/27-102:0.20826,(((Q08606_AULHA/25-100:0.09663,Q08608_AULHA/24-99:0.08246):0.03162,((Q31459_MORSA/28-103:0.07798,Q31463_MORSA/28-103:0.11428):0.03733,Q31462_MORSA/28-103:0.07404):0.08006):0.05461,(Q08607_CYPFR/25-100:0.10789,Q08611_CYPFR/23-98:0.06744):0.03866):0.02054):0.01386):0.19374,(Q31590_SALSA/27-102:0.01434,(Q31589_SALSA/41-115:0.09462,Q31487_ONCMY/30-105:0.09456):0.01391):0.20143):0.07968,(((Q31354_BRARE/29-104:0.07385,Q31369_BRARE/31-106:0.10595):0.07688,Q31377_CYPCA/25-100:0.10190):0.11120,(Q31358_BRARE/26-101:0.24684,(Q31375_CYPCA/31-106:0.05754,Q31376_CYPCA/25-100:0.04981):0.04372):0.09231):0.11767):0.41137,(((Q31431_9PASS/37-110:0.08713,Q31432_9PASS/37-111:0.08790):0.03632,(((Q31339_AGEPH/16-90:0.09050,Q31341_AGEPH/16-90:0.09061):0.06016,Q31392_CARME/16-90:0.03999):0.02693,(Q31391_CARME/16-90:0.12532,Q31390_CARME/16-90:0.07791):0.03478):0.02510):0.04698,(Q31314_APHCE/16-90:0.09051,((Q31311_APHCE/16-90:0.09731,Q31316_APHCE/16-90:0.03784):0.02682,(Q31315_APHCE/16-90:0.08517,Q31320_APHCE/16-90:0.07527):0.04068):0.03790):0.04237):0.07532):0.05511,((O19492_CHICK/8-82:0.06938,((O19491_CHICK/8-82:0.06447,O19494_CHICK/8-82:0.07965):0.00809,(O19493_CHICK/8-82:0.05727,O19500_CHICK/8-82:0.07857):0.02272):0.01714):0.03809,O19495_CHICK/8-82:0.08702):0.10305):0.09680,Q30854_OTOGA/8-82:0.25090):0.02820,(Q30764_MACRG/42-116:0.12991,((Q31244_MUSSA/8-81:0.22539,Q95399_BOVIN/8-82:0.23939):0.05143,((P79597_XENLA/33-107:0.08036,(Q06743_XENLA/41-115:0.05671,(Q06745_XENLA/42-116:0.01397,Q06742_XENLA/41-115:0.13706):0.06259):0.03055):0.25280,((O35424_MOUSE/39-113:0.13094,Q30827_SHEEP/39-113:0.08648):0.01891,2DOB_HUMAN/39-113:0.08553):0.14803):0.03685):0.02414):0.06133):0.01399):0.06052,((O02908_MUSMA/9-83:0.08841,(HB21_MOUSE/40-114:0.04437,((O02896_MOUSE/9-83:0.05522,O02877_MUSCO/9-83:0.06610):0.03021,O02879_MUSCR/9-83:0.03613):0.01395):0.01487):0.01687,(O02909_MUSPL/9-83:0.07168,(HB2D_RAT/40-114:0.07851,Q31270_RAT/21-95:0.04449):0.03751):0.01969):0.02292):0.01645,(Q30540_LORTA/8-82:0.08495,Q30539_LORTA/8-82:0.06275):0.03736):0.02687):0.00460,P79466_BOVIN/8-82:0.19443):0.03423,(HB2P_RABIT/43-113:0.14066,(O19274_SAGOE/6-78:0.08604,HB2P_HUMAN/42-114:0.07460):0.06276):0.03845):0.03068,((Q31140_MOUSE/8-80:0.06751,(Q31136_MOUSE/8-80:0.08400,Q31292_9MURI/7-79:0.06663):0.01511):0.01226,(HB2A_MOUSE/40-114:0.05635,(HB21_SPAEH/42-114:0.18123,HB2A_RAT/8-82:0.08035):0.05359):0.01534):0.04380):0.02526,HB2C_PIG/45-119:0.09088):0.02539,Q30458_HORSE/41-115:0.05211):0.01038,((P79447_BOVIN/5-79:0.03966,P79442_BOVIN/5-79:0.05503):0.02051,(P79455_BOVIN/5-78:0.12846,P79456_BOVIN/5-79:0.10540):0.03527):0.01447):0.06200,(((Q30338_CERAE/5-79:0.10427,Q29922_HUMAN/8-82:0.02930):0.00267,(HB22_HUMAN/45-119:0.06055,Q30554_MACAR/5-79:0.07150):0.03411):0.01105,(Q30694_MACMU/5-79:0.06222,O02712_MACMU/5-79:0.06006):0.03632):0.00994):0.07302,HB21_HUMAN/45-119:0.00000):0.19330,Q29783_HUMAN/8-82:0.37718):1.07578,(2DMB_HUMAN/27-106:0.07590,Q30262_BOVIN/26-105:0.19750):0.07543):0.04468,P70238_MOUSE/27-106:0.08549,Q31253_RAT/9-88:0.05359);