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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00917 phylogeny
for restricted amino acid alignment


 
(((((((((((O45623_CAEEL/37-168,UBP7_HUMAN/74-195),Q20681_CAEEL/86-206),(P90846_CAEEL/56-173,(((((((O76607_CAEEL/140-256,O76610_CAEEL/171-283),O44805_CAEEL/16-135),((O16564_CAEEL/13-132,O44817_CAEEL/13-126),(O17297_CAEEL/14-127,(O16567_CAEEL/25-139,(O44815_CAEEL/13-128,O76568_CAEEL/14-130))))),O17193_CAEEL/10-126),O16736_CAEEL/13-129),((O17175_CAEEL/336-449,(P91298_CAEEL/294-405,(O17176_CAEEL/367-487,P91300_CAEEL/282-399))),((O17294_CAEEL/11-123,(O17192_CAEEL/11-125,O17303_CAEEL/12-125)),((O76557_CAEEL/289-402,(((O16552_CAEEL/148-263,O16553_CAEEL/148-261),(((O16558_CAEEL/148-261,O16559_CAEEL/156-269),(O16560_CAEEL/139-252,(O16557_CAEEL/95-208,O16563_CAEEL/23-136))),O16554_CAEEL/22-135)),(O17293_CAEEL/110-222,((O17190_CAEEL/288-402,(O17288_CAEEL/228-340,O76558_CAEEL/283-397)),(O16562_CAEEL/107-218,O17191_CAEEL/289-401))))),(O17301_CAEEL/574-687,(O16555_CAEEL/11-123,(O16551_CAEEL/66-178,((O76641_CAEEL/14-126,O76642_CAEEL/14-126),O16556_CAEEL/14-114)))))))),O76611_CAEEL/29-142))),DG17_DICDI/323-448),(P93826_ARATH/73-198,UBP15_YEAST/45-181)),O80808_ARATH/121-240),((((MEPA_HUMAN/437-595,MEPA_RAT/438-598),(MEPB_HUMAN/433-587,MEPB_MOUSE/434-588)),(TRAF4_HUMAN/313-464,(O62248_CAEEL/268-412,(((TRAF1_MOUSE/265-407,TRAF2_MOUSE/357-498),TRAF3_HUMAN/421-562),TRAF5_HUMAN/409-551)))),TRAF6_MOUSE/364-509)),(SPOP_HUMAN/37-161,Q94420_CAEEL/47-164)),((O81494_ARATH/84-212,O81496_ARATH/64-169),O81499_ARATH/77-210)),O22286_ARATH/30-158),O04596_ARATH/25-139,O23098_ARATH/16-129);
(((((((((((O45623_CAEEL/37-168:1.36826,UBP7_HUMAN/74-195:0.48607):0.34217,Q20681_CAEEL/86-206:0.75514):0.27905,(P90846_CAEEL/56-173:1.20903,(((((((O76607_CAEEL/140-256:1.04313,O76610_CAEEL/171-283:0.97213):0.48669,O44805_CAEEL/16-135:0.75984):0.13416,((O16564_CAEEL/13-132:0.65934,O44817_CAEEL/13-126:0.60513):0.14259,(O17297_CAEEL/14-127:0.50196,(O16567_CAEEL/25-139:0.55907,(O44815_CAEEL/13-128:0.39237,O76568_CAEEL/14-130:0.54192):0.07452):0.05248):0.11874):0.15008):0.16871,O17193_CAEEL/10-126:0.89418):0.06656,O16736_CAEEL/13-129:1.17266):0.02679,((O17175_CAEEL/336-449:0.57108,(P91298_CAEEL/294-405:0.47228,(O17176_CAEEL/367-487:0.30423,P91300_CAEEL/282-399:0.29879):0.18995):0.34648):0.15359,((O17294_CAEEL/11-123:0.24902,(O17192_CAEEL/11-125:0.12735,O17303_CAEEL/12-125:0.11112):0.07664):0.39284,((O76557_CAEEL/289-402:0.36267,(((O16552_CAEEL/148-263:0.16656,O16553_CAEEL/148-261:0.19368):0.25946,(((O16558_CAEEL/148-261:0.11086,O16559_CAEEL/156-269:0.17466):0.09821,(O16560_CAEEL/139-252:0.26427,(O16557_CAEEL/95-208:0.14468,O16563_CAEEL/23-136:0.13676):0.04279):0.05475):0.08358,O16554_CAEEL/22-135:0.21291):0.06979):0.12540,(O17293_CAEEL/110-222:0.51404,((O17190_CAEEL/288-402:0.20174,(O17288_CAEEL/228-340:0.29086,O76558_CAEEL/283-397:0.21013):0.04384):0.02303,(O16562_CAEEL/107-218:0.42610,O17191_CAEEL/289-401:0.10088):0.07891):0.08948):0.13239):0.03065):0.19491,(O17301_CAEEL/574-687:0.32385,(O16555_CAEEL/11-123:0.34869,(O16551_CAEEL/66-178:0.17660,((O76641_CAEEL/14-126:0.11149,O76642_CAEEL/14-126:0.17574):0.01293,O16556_CAEEL/14-114:0.15898):0.02367):0.09992):0.05157):0.06426):0.05769):0.11707):0.20945):0.22271,O76611_CAEEL/29-142:1.40167):0.11766):0.13247):0.39145,DG17_DICDI/323-448:1.26507):0.00710,(P93826_ARATH/73-198:0.92143,UBP15_YEAST/45-181:1.13133):0.34292):0.26518,O80808_ARATH/121-240:1.12647):0.16697,((((MEPA_HUMAN/437-595:0.12729,MEPA_RAT/438-598:0.15058):0.46146,(MEPB_HUMAN/433-587:0.08098,MEPB_MOUSE/434-588:0.13645):0.40622):0.49196,(TRAF4_HUMAN/313-464:0.46237,(O62248_CAEEL/268-412:0.93083,(((TRAF1_MOUSE/265-407:0.25613,TRAF2_MOUSE/357-498:0.19512):0.16079,TRAF3_HUMAN/421-562:0.23255):0.08184,TRAF5_HUMAN/409-551:0.18398):0.13528):0.20944):0.28057):0.37182,TRAF6_MOUSE/364-509:0.76459):1.01466):0.38814,(SPOP_HUMAN/37-161:0.49781,Q94420_CAEEL/47-164:1.30811):0.79892):0.28325,((O81494_ARATH/84-212:0.07225,O81496_ARATH/64-169:0.25809):0.08020,O81499_ARATH/77-210:0.36679):1.02050):0.18435,O22286_ARATH/30-158:0.83536):1.13008,O04596_ARATH/25-139:0.30504,O23098_ARATH/16-129:0.00000);