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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00860 alignment
(20 sequences with 449 aa)


YWDJ_BACSU/1-392 MKLVLGALQWTAFIIAAAIVVPVAVAQS---FHLDHSDSaRLIQSTFFVLGIAAVIQCL-------KGHRLPINESPAGLWWG------VYTIYAGLTG--.-TVFATYGDTLRGLQGALLVSAVCFFLLSVFKVIDRLAKLFTPVVTGVYLLLLVMQLSQPIIKGILGIGYR-QDG------VDGLVFGLALVVIAAAFIMTNS---NIMFFKQYSILLALFGGWVLFAAAG----AAKP----------.---IEMPDRLFQLPSLFPFGTPL----.-FNSGLIITSIFITILLIVNMLASMKVVDIAMKKFSKQPDGKHHERHAGFAASFSHLLSGLTGA-IAPVPISGAAGFIETTKMPSKKPFMLGSILVIVISVIPFFMNTFASLPSPV.GFAVNFVVFSAMGGLAFAEFDSYEKEE.SKRVRSIIGISLLTGVGIMFVPET
YBBY_ECOLI/8-396 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLP---QSSLlTLTQYAFLATALACFAQAF-------CGHRRAIMEGPGGLWWG-----TILTITLGEASRG.----TPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADP---NFKIQLPPFALSVAVMCLVLAMIIF---LPQRFARYGLLVGTITGWLLWYFCFPSSHSLSG----------.----E--LHWQWF--P--LGSGG----.ALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAG---NTRYRRSFVATGFMTLITVPLAV-IPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPV.SSAVMLVSYLPLLFSALVFSQQITFT-.-ARNIYRLALPLFVGIFLMALPPV
YICE_ECOLI/33-428 PQTLFAACQHLLAMFVAVITPALLICQA--LGLPAQDTQ.HIISMSLFASGVASIIQIKAWGP---VGSGLLSIQGTSFNFVAPLIMGGTALKT-G-----.-G--ADVPTMMAALFGTLMLASCTEMVISRVLH--LARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDN--T--FGAPKNLLLAGVVLALIILLNRQ---RNPYLRVASLVIAMAAGYALAWFMG--MLPESNE---------.----PMTQELIMVPTPLYYGLG-----.-IEWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNT-FPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPV.LGGATLVMFGTIAASGVRIVSREPLN-.-RRAILIIALSLAVGLGVSQQPLI
YGFO_ECOLI/41-435 HQALVGAITHLLAIFVPMVTPALIVGAA--LQLSAETTA.YLVSMAMIASGIGTWLQVNRYGI---VGSGLLSIQSVNFSFVTVMIALGSSMKS-D-----.-G--FHEELIMSSLLGVSFVGAFLVVGSSFILP--YLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSG--T--FGNYEHLGVGLLVLIVVIGFNCC---RSPLLRMGGIAIGLCVGYIASLCLG--MVDFSS----------.----MRNLPLITIPHPFKYGFS-----.-FSFHQFLVVGTIYLLSVLEAVGDITATAMVSRRPIQGEEYQSRLKGGVLADGLVSVIASAVGS-LPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVILGLFPMIGGFFTTIPSAV.LGGAMTLMFSMIAIAGIRIIITNGLK-.-RRETLIVATSLGLGLGVSYDPEI
PBUX_BACSU/6-386 GKTLSLGIQHVLAMYAGAIVVPLIVGKA--MGLTVEQLT.YLVSIDIFMCGVATLLQVW---SNRFFGIGLPVVLGCTFTAVS-------PMIAIGS----.-------EYGVSTVYGSIIASGILVILISFFFG--KLVSFFPPVVTGSVVTIIGITLMPVAMNNMAGGE---GSA----DFGDLSNLALAFTVLSIIVLLYRF---TKGFIKSVSILIGILIGTFIAYFMG--KVQFDN----------.----VSDAAVVQMIQPFYFGAPS----.-FHAAPIITMSIVAIVSLVESTGVYFALGDLTNRRLT----EIDLSKGYRAEGLAVLLGGIFNA-FPYTAFSQNVGLVQLTGIKKNAVIVVTGVILMAFGLFPKIAAFTTIIPSAV.LGGAMVAMFGMVIAYGIKMLSRIDFA-.KQENLLIVACSVGLGLGVTVVPDI
PUCK_BACSU/8-388 LQLMMLGLQHMLAMYAGAILVPLIVGAA--IGLNAGQLT.YLIAIDLFMCGAATLLQLW---RNRYFGIGLPVVLGCTFTAVG-------PMISIGS----.-------TYGVPAIYGAIIAAGLIVVLAAGFFG--KLVRFFPPVVTGSVVMIIGISLIPTAMNNLAGGE---GSK----EFGSLDNVLLGFGVTAFILLLFYF---FKGFIRSIAILLGLIAGTAAAYFMG--KVDFSE----------.----VLEASWLHVPSLFYFGPPT----.-FELPAVVTMLLVAIVSLVESTGVYFALADITNRRLS----EKDLEKGYRAEGLAILLGGLFNA-FPYTAFSQNVGIVQLSKMKSVNVIAITGIILVAIGLVPKAAALTTVIPTPV.LGGAMIVMFGMVISYGIKMLSSVDLD-.SQGNLLIIASSVSLGLGATTVPAL
PUCJ_BACSU/6-391 FKVFTLSLQHVLAMYAGAILVPLLVGRA--LNVTTEQLS.YLLAIDLLTCGVATLLQTL---RGTYIGIGLPVMLGSSFVAVT-------PMIAIGS----.-------NYGIHAIYGSIIAAGVFIFLFARFFG--KLTVLFPPVVTGTVVTLIGLSLVPTGVKNMAGGEKINGSAN--PEYGSLENLLLSVGVLVLILVLNRF---LKGFARTLSVLIGIAAGTAAAAIMG--KVSFSS----------.----VTEAPFFQIPKPFYFGAPA----.-FEIGPILTMLIVGIVIIVESTGVFYAIGKICGRPLT----DKDLVKGYRAEGIAILIGGLFNA-FPYNTFAQNAGLLQLTKVKTRNIVVTAGCILVCLGLIPKIAALASAVPAAV.LGGATVVMFGMVIASGVKMLSTADLK-.NQYHLLTIACSIALGIGASTAPGI
YCDG_ECOLI/30-404 AQTAVMGVQHAVAMFGATVLMPILMGLD-----------.--PNLSILMSGIGTLLFFF------ITGGRVPSYLGSSAAFVG------VVIAATGFNG--.QGINPNISIALGGIIACGLVYTVIGLVVMKIGTR-WIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS---------------AFDSWMAVMTVLCIGLVAVF---TRGMIQRLLILVGLIVACLLYGVMTN-VLGLGKAVDFT-----.---LVSHAAWFGLP---HFSTPA----.-FNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMD-----PYMGRAFVGDGLATMLSGSVGG-SGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAV.IGGASIVVFGLIAVAGARIWVQNRVDLsQNGNLIMVAVTLVLGAGDFALTLG
URAA_HAEIN/16-385 LKQSFVGLQMLFVAFGALVLVPLITGLD-----------.--SNTALLTAGVGTLLFQF------CTGKQVPIFLASSFAFIAP---IQYGVQTWG-----.------IATTMGGLAFTGLVYFALSTLVKLRGAE-ALQRFFPPVVVGPVIIIIGMGLAPIAVDMSLGK-----NS----AYAYNDAVLVSMVTLLTTLSVAVF---AKGLMKLIPIMFGITAGYILCLFLG--LINFQP----------.----VIDAPWFSLP---KLTTP-----.EFNLEAILYMLPIAIAPAVEHVGGIMAISSVTGKDFLK---KPGLHRTLLGDGIATAAASLVGG-PPNTTYAEVTGAVMLTRNFNPNIMTWAAVWAIAISFCGKVGAFLSTIPTIV.MGGIMMLVFGSIAVVGMSTLIRGKVDVtEARNLCIISVVMTFGIGNMFVDVG
URAA_ECOLI/15-385 LQTIPLSLQHLFAMFGATVLVPVLFHIN-----------.-P-ATVLLFNGIGTLLYLF------ICKGKIPAYLGSSFAFISP----VLLLLPLG-----.------YEVALGGFIMCGVLFCLVSFIVKKAGTG-WLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLP---AEG----QTPDSKTIIISITTLAVTVLGSVL---FRGFLAIIPILIGVLVGYALSFAMG--IVDTTPI---------.----INAHWFALPTLYTPRFEWF----.---A-ILTILPAA-LVVIAEHVGHLVVTANIVKKDLLR---DPGLHRSMFANGLSTVISGFFGS-TPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPV.MGGVSLLLYGVIGASGIRVLIESKVDYnKAQNLILTSVILIIGVSGAKVNIG
PYRP_BACSU/17-395 FSWVSFSLQHLFAMFGSTILVPKLVGMS-----------.-P-AVALVTSGIGTLAYLL------ITKGQIPAYLGSSFAFISP----IILVKATGG----.------PGAAMVGAFLAGLVYGLIALLIRQLGTG-WLMKILPPVVVGPVIIVIGLGLASTAVNMAMYAD---PNAS--ELVYSLKHFSVAGVTLAITIICAIF---LRGFLSLIPVLIGIIGGYLFALTQG--IVNFQPV---------.----LDAKWFAVPEFIIPFKDYHRQLR.SASQPQWFLSHLSQCQSISATNG---AESKVVGQDFI----KAGLHRSIMGDSVATILASLIGG-PPTTTYGENIGVLAITRVFSVFVIGGAAVIALCFGFIGKISALISSVPSAV.MGGVSFLLFGIIASSGLRMLIDNKIDYeNNRNLIITSVILVIGVGGAFIQVS
PYRP_BACCL/15-390 GQWITLSLQHLFAMFGATILVPYLVGLD-----------.-P-SIALLTSGLGTLAFLL------ITKWQVPAYLGSSFAYIAP----IIAAKTAGG----.------PGAAMIGSFLAGLVYGVVALIIKKAGYR-WVMKLLPPVVVGPVIIVIGLGLAGTAVGMAMNG----PDG-----KYSLLHFSVALVTLAATIVCSVL---ARGMLSLIPVLVGIVVGYLYALAVG--LVDLSKV---------.----AAAKWFEWPDFLIPFADYP--VR.VTWEIVMLMVPVA-IVTLSEHIGHQLVLSKVVGRDLIQ---KPGLHRSILGDGTATMISALLGG-PPKTTYGENIGVLAITRVYSVYVLAGAAVIAIAFGFVGKITALISSIPTPV.MGGVSILLFGIIASSGLRMLIDSRVDFgQTRNLVIASVILVIGIGGAVLKIS
Q60850_MOUSE/80-476 GGLSYPPAQLLASSFFSCGLSTVLQTWMG-----SRLPLiQAPSLEFLIPALVLTNQKLP------LTTKTPGNASLSLPLCS------LTRSCHG-----.---LELWNTSLREVSGAVVVSGLLQGTIGLLGVPGRVFPYCGPLVLAPSLVVAGLSAHKEVAQFCSAHWGLALLLIL-LMVVCSQHLGSCQIPLCSWRPSSTSTHICIPVFRLLSVLAPVACVWFISAFVGTSVIPLQLS--E------.----PSDAPWFWLPHPGEWEWPL----.-LTPRALAAGISMALAASTSSLGCYALCGQLLRLSPPP---PHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPV.LGGVLGVTQAVVLSAGFSSFHLADID-.SGRNVFIVGFSIFMALLLPRWLRE
Q18771_CAEEL/30-454 GIALLYGLQQVMVCVSALLTVPLIMADSMCPGSSIAVLRqTLISSTFVSSGISTIIQTL-------FGMRLALLQGTAFAYVPSVQGFMSLPENTCNATESdYVPEEVYYGKLALLQGCLIASSFVPILIGATGLVGMLTKFIGPLTVSPLMLLLAFSQVDLMVTHISKHWVAIVQA---VTLFATILYLAEVKVPVPGIKNGKFHWYRINLFGQYPYLIAICTSWIFCVALT--IFNLTPEGSAARVDKNiSLAVIRESSWLEVPYPGKFGPPQ----.-FNTGLFLLFLLSAMTSVFESVGDYHAAARVSEERPPP---SHAINRGILAEGLGSLISGLLGPGVGMTTHTENIGVIGVTRVASRWTMVMAGVFLIILGLITKIGALLSTIPDPL.VGGVLASSMAMVVGVAVSNLQTVDMT-.LSRNMGIFGFSMMFGLIVPKYFKL
O18063_CAEEL/22-377 SAIFFYGFQQMLVCISALLITPYLVSNLLCAGVETT---.-------------------------------------------------------------.------------AISGSLFAAVLIMPFLGLTGMVGRMAKHIGPITIVPMLILLCIGVIPDIEHKVSLHWISIIEILI-LIAFVVLLEEYEVPIPAFSMEQKKFNTMKIKLFSQFPYLLGIMIAWFACWILT--ISDLEPYGSSARTDRNdSLFVLENTPWIQIQYPLQFGFPR----.-LSAPLVIAFTASMLAAMIESIGSYGICARICQQGSPP---SSSMNRAFVVEGFGSMLAALMGVGTGVTTYSENIAIMQVTKVTSRITMQCAGVILILMGIFSKFAAFLAMIPEAI.IGGVLTAGMSMICGVAFSNLQSVDLR-.LSRNLTIIGLSIILGCTIPAHFEK
O18061_CAEEL/19-439 SAIFFFGLQQMLVCISALLVTPYFVSNLLCAGAETTEVRvQLIAATFISSGIATILQTT-------FGLRLAILHGPSFAFFP------ALHTFGDVYPCNsDTDTTQWKEKLQMISGSLFVAVLIMPFLGITGMVGRIAKHIGPITIVPMLMLLCIGTVQDIEQKVSHHWISIVEILL-LIIFVVLLEEFEVPMPAFSMEKKAFYTAKMKIFSQFPYLLGIMIAWFVCWILT--ITDLEPYGCSARTDRNeSLFVLENTPWIQIQYPLQYGLPK----.-LSAPLIIAFSASMLAATIESIGNYGICARICQQGSPP---SSSMNRAFVVEGFGSMLAALMGVGTGVTTYSENIAIMQVTKVTSRITMQCAGVILILMGIFSKFAAFLAMIPEAI.IGGVLTAGMSMICGVAFSNLQSVDLR-.LSRNLTIIGLSIILGCTIPAHFEK
O18057_CAEEL/15-435 PSIMLFGLQQMMICLSSLLVIPYVVSDMLCAGDQAMEIRvQLISATFVTSGIATILQTT-------FGMRLSILHGPSFAFLP------ALHTFQATFPCDaNTDTSNWQEKMQMISGSCLIAVLIMPILGFTGLVGKISKYIGPVTIVPIMSLLTIGTVPDIESKMALHWISIVEFLT-LILFVVILERYEVPIPIFSLSEKKFKFTRQKIFSQFPYLLGISIVWFICFIMT--ITNAEPRGGEARTDQNaSITVFDQTPWVQMPMPLFFGPPK----.-FNLALVCGFTASCFAAMIESIGDYNLCAKISKQSRPP---PSNTNRAFVVEGIGCILAALWGVGTGVTTYAENIAIMSVTKVTSRITMQMAGVFLILAGVISKFAAFLSMIPEPI.IGGLLAMGVCLINGVSLSNLQTVDMK-.LSRNLTIIGVSIIMGLTVATHFEK
YJCD_HAEIN/18-399 RQEIIAGLTTFLAMVYSVIVVPNMLGAA----G--FPAE.SVFIATCLVAGLGSILIGL------WANAPMAIGCAISLTAFT------AFSLVIG-----.------QKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSN-QAG---LPVKLGDFTSFPVMMSLIGLALIIG---LEKMKIKGGILWVIIAITIVGLIFDP-NVKFGGE---------.----IFKMPTFGE---NSLFLQLDFMG.ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQ-IINGGKALTSDSISSLFSGLFGT-APAAVYIESAAGTAAG----GKTGITAIVVGVLFLLMLFFQPLAFLVPGYA.-TAPALMYVGLLMLSNVSKLDFDDFV-.GAMSGLICAVFIVLTANIVTGIML
YJCD_ECOLI/26-410 RQEVVAGLTTFLAMVYSVIVVPGMLGKA----G--FPPA.AVFVATCLVAGLGSIVMGL------WANLPLAIGCAISLTAFT------AFSLVLG-----.------QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDG---LPVALGDFATFPVIMSLVGLAVIIG---LEKLKVPGGILLTIIGISIVGLIFDP-NVHFSG----------.----VFAMPSLSDENGNSLIGSLDIMG.ALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQ-IIDGGKALTTDSMSSVFSGLVGA-APAAVYIESAAGTAAG----GKTGLTAITVGVLFLLILFLSPLSYLVPGYA.-TAPALMYVGLLMLSNVAKIDFADFV-.DAMAGLVTAVFIVLTCNIVTGIMI
O34978_BACSU/12-396 KQEIIAGLTTFFTMVYIVVVNPVILANA----G--VPFD.QVFTATIIASIVGTLWMAL------AANYPIAIAPGMGLNAYL------AFHVVSAS----.-----DGGITYATAFSAVFTAGVLFIILSLTPLRKQLIEAIPNNLKYGITTGIGLFIAFIGLRQAGIVAAD--ES---NLVTLGNLHSPGVILTLVGLLISVV---LMVLNVSGALFIGMAATALIAFFTG--QLHFSKG---------.----FMSLPHL--PEGLMISNPFTAFGdVIHHGLYAVVFSFLLVTIFDTTGTMIGVAEQAG-LMKNNK-LPNVRKALLADSTATTVGAVFGT-SPTTAFIESSAGVAAG----GRTGLTALTVAVMFAASMFFSPLVSALSGIAaITSPALIIVGSLMMGSVSNMNWKEMD-.EAFPAFLVILAMPLTSSISTGIAL