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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00831 phylogeny
for restricted amino acid alignment


 
((((((((((((((((RL29_MYCBO/7-60,RL29_CORGL/7-64),RL29_STRCO/7-64),Q8G410_BIFLO/10-67),((RL29_STAEP/3-60,(RL29_LISMO/3-60,RL29_LACPL/3-60)),RL29_BACHD/3-60)),(((RL29_BORBU/2-59,(RL29_BACTN/3-60,RL29_CHLTE/3-60)),RL29_FUSNN/3-60),((RL29_HELPY/3-60,RL29_CAMJE/3-60),RL29_THEMA/3-60))),((RL29_CLOPE/6-63,RL29_CLOAB/3-60),RL29_THETN/3-60)),(((O97445_GIALA/6-65,(Q8SQQ7_ENCCU/5-61,(((RL35_SCHPO/5-63,RL35_YEAST/6-61),(((RL352_ARATH/6-64,((Q8R102_MOUSE/6-64,RL35_CAEEL/6-64),Q962T0_SPOFR/6-64)),(Q96UT5_PARBR/8-66,Q96W38_OPHNO/21-78)),RL35_BABBO/6-64)),Q26035_PLAFA/6-63))),(((((RL29_METMA/6-64,(RL29_HALMA/5-63,RL29_HALN1/6-64)),(RL29_METKA/8-66,RL29_PYRAE/9-66)),RL29_THEVO/6-64),(RL29_METTH/6-64,RL29_METJA/6-64)),RL29_ARCFU/6-64)),(RL29_SULTO/19-75,RL29_SULSO/5-62))),(((RL29_XANCP/3-60,RL29_XYLFT/3-60),((RL29_HAEIN/3-60,(((((RL29_BUCAI/4-61,RL29_BUCBP/3-60),RL29_WIGBR/3-60),RL29_ECOLI/3-60),RL29_PSEAE/3-60),Q8EK61_SHEON/3-60)),(RL29_RALSO/3-60,RL29_NEIMB/3-60))),((RL29_AGRT5/3-60,((RL29_BRUSU/3-60,RL29_RHILO/3-60),Q89J92_BRAJA/6-63)),RL29_CAUCR/3-60))),(RL29_STRPY/10-67,RL29_LACLA/10-67)),(((RL29_MYCGA/2-59,RL29_MYCGE/4-61),(RL29_UREPA/5-62,Q8EUC0_MYCPE/4-61)),((RL29_SPICI/1-58,RL29_MYCCA/6-63),RL29_MYCPU/3-60))),(RL29_DEIRA/3-60,RL29_THETH/10-67)),RL29_LEPIN/6-61),((RK29_GUITH/7-64,RK29_ODOSI/6-63),(RL29_CHLTR/8-66,(RK29_ARATH/67-124,RK29_MAIZE/68-125)))),Q8DMM4_SYNEL/6-63),(RL29_ANASP/6-63,RL29_SYNY3/6-63)),RL29_SYNP6/6-63,RK29_PORPU/6-63);
((((((((((((((((RL29_MYCBO/7-60:0.14559,RL29_CORGL/7-64:0.20483):0.14449,RL29_STRCO/7-64:0.20008):0.06674,Q8G410_BIFLO/10-67:0.38134):0.15632,((RL29_STAEP/3-60:0.15984,(RL29_LISMO/3-60:0.15484,RL29_LACPL/3-60:0.24397):0.05401):0.05810,RL29_BACHD/3-60:0.16871):0.15861):0.00000,(((RL29_BORBU/2-59:0.79593,(RL29_BACTN/3-60:0.59185,RL29_CHLTE/3-60:0.97861):0.34241):0.10337,RL29_FUSNN/3-60:0.21481):0.16713,((RL29_HELPY/3-60:0.27941,RL29_CAMJE/3-60:0.30580):0.56553,RL29_THEMA/3-60:0.48560):0.17000):0.00000):0.09516,((RL29_CLOPE/6-63:0.18546,RL29_CLOAB/3-60:0.12945):0.14411,RL29_THETN/3-60:0.12767):0.08283):0.06054,(((O97445_GIALA/6-65:0.36387,(Q8SQQ7_ENCCU/5-61:0.99372,(((RL35_SCHPO/5-63:0.32147,RL35_YEAST/6-61:0.28241):0.12311,(((RL352_ARATH/6-64:0.32917,((Q8R102_MOUSE/6-64:0.06968,RL35_CAEEL/6-64:0.24969):0.07157,Q962T0_SPOFR/6-64:0.28118):0.00588):0.03863,(Q96UT5_PARBR/8-66:0.17369,Q96W38_OPHNO/21-78:0.19541):0.23143):0.08498,RL35_BABBO/6-64:0.39197):0.00000):0.11050,Q26035_PLAFA/6-63:0.40959):0.10507):0.16163):0.33634,(((((RL29_METMA/6-64:0.26231,(RL29_HALMA/5-63:0.18193,RL29_HALN1/6-64:0.07846):0.20493):0.19195,(RL29_METKA/8-66:0.28604,RL29_PYRAE/9-66:0.54738):0.06488):0.01965,RL29_THEVO/6-64:0.56380):0.15462,(RL29_METTH/6-64:0.40096,RL29_METJA/6-64:0.20155):0.07815):0.22452,RL29_ARCFU/6-64:0.57395):0.06109):0.08058,(RL29_SULTO/19-75:0.35849,RL29_SULSO/5-62:0.21383):0.30008):0.14619):0.08970,(((RL29_XANCP/3-60:0.17999,RL29_XYLFT/3-60:0.22705):0.27751,((RL29_HAEIN/3-60:0.14482,(((((RL29_BUCAI/4-61:0.24010,RL29_BUCBP/3-60:0.38637):0.07273,RL29_WIGBR/3-60:0.28009):0.12084,RL29_ECOLI/3-60:0.01133):0.08001,RL29_PSEAE/3-60:0.20703):0.06595,Q8EK61_SHEON/3-60:0.16966):0.00000):0.05934,(RL29_RALSO/3-60:0.25115,RL29_NEIMB/3-60:0.15545):0.10648):0.14487):0.22536,((RL29_AGRT5/3-60:0.13372,((RL29_BRUSU/3-60:0.10159,RL29_RHILO/3-60:0.14191):0.10429,Q89J92_BRAJA/6-63:0.31464):0.09757):0.11980,RL29_CAUCR/3-60:0.21273):0.13009):0.14473):0.13147,(RL29_STRPY/10-67:0.00000,RL29_LACLA/10-67:0.29053):0.27050):0.07302,(((RL29_MYCGA/2-59:0.25253,RL29_MYCGE/4-61:0.17384):0.28752,(RL29_UREPA/5-62:0.28756,Q8EUC0_MYCPE/4-61:0.53895):0.10769):0.20276,((RL29_SPICI/1-58:0.20982,RL29_MYCCA/6-63:0.50959):0.23623,RL29_MYCPU/3-60:0.53484):0.04342):0.11223):0.02641,(RL29_DEIRA/3-60:0.59819,RL29_THETH/10-67:0.36037):0.23136):0.27332,RL29_LEPIN/6-61:1.10085):0.07885,((RK29_GUITH/7-64:0.46530,RK29_ODOSI/6-63:0.78363):0.12872,(RL29_CHLTR/8-66:0.70536,(RK29_ARATH/67-124:0.14328,RK29_MAIZE/68-125:0.14014):0.38949):0.24892):0.10358):0.21167,Q8DMM4_SYNEL/6-63:0.26677):0.09441,(RL29_ANASP/6-63:0.19924,RL29_SYNY3/6-63:0.26041):0.10568):0.11262,RL29_SYNP6/6-63:0.13304,RK29_PORPU/6-63:0.39307);