EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00716 alignment
(10 sequences with 1263 bp)


VP40_VZVD/28-373 GAATTAAATATTACCCCAGAGATTGTGCGGTCCGCTTTGCCGCCTACTAGT---..................---AAAATACCAATAAACATCGATCATCGAAAAGACTGTGTCGTGGGTGAAGTAATCGCAATCATTGAGGACATACGCGGACCTTTTTTTTTGGGTATCGTTAGATGCCCTCAACTACATGCGGTGCTGTTTGAAGCGGCCCATTCGAATTTTTTTGGAAATAGAGATTCT---...---GTATTATCTCCGCTAGAACGTGCGTTATACTTGGTCACAAATTACTTACCCTCCGTATCCCTGTCTTCAAAACGA------------TTGTCCCCGAATGAGATACCA---...---GACGGTAATTTTTTTACCCATGTTGCGTTATGTGTTGTTGGAAGACGCGTTGGAACAGTGGTCAATTATGACTGTACCCCGGAATCTTCAATTGAACCATTCCGGGTTTTATCGATGGAAAGTAAAGCGCGGTTATTGTCG---------CTGGTTAAAGACTACGCGGGTTTAAATAAA...............---------------GTATGGAAGGTTAGCGAAGATAAACTCGCCAAGGTGTTATTATCCACAGCCGTGAACAATATGCTTTTAAGAGATAGATGGGACGTGGTTGCAAAACGTAGACGCGAAGCCGGAATTATG...GGTCACGTTTATCTTCAGGCTAGCACCGGATATGGACTTGCTCGGATAACCAACGTTAATGGGGTGGAGTCTAAATTACCCAACGCGGGT................................................GTTATAAACGCCACATTCCACCCCGGCGGG---------------------CCC---ATATACGATCTCGCGTTGGGTGTTGGGGAA.......................................TCAAATGAAGATTGTGAAAAGACTGTTCCGCATTTAAAGGTTACGCAGTTGTGTAGGAACGAC..................AGCGATATGGCTTCTGTAGCAGGTAACGCTAGTAATATCTCACCACAGCCCCCGTCGggcgttccaaccGGAGGGGAATTTGTACTGATACCTACCGCGTATTATTCACAGCTGTTAACCGGGCAGACTAAAAATCCGCAGGTATCAATTGGAGCTCCAAATAACGGACAGTATATCGTCGGGCCATATGGATCTCCACACCCGCCTGCCTTCCCA
VP40_BHV1C/44-376 GAGCTCGTCCTCACGCGCGAGCAGGTGGCGCGCGCGCTGCCGCCCGCCGCC---..................---CCGCTGCCGATCAACATTGACCACGCAAGCGCCTGCGAAGTCGGCGCCGTGCTAGCCCTCGCCGACGACGACGCCGGGCTGTTTTTCGTCGGCGTCATCAACTGCCCGCAACTGGCCGACACGCTCGCGGGCGTGGCGCACCCCGCGTTCTTCGGCGCCGACGCCCCC---...---TCGCTCACGCCGCGCGAGCGCTTCCTGTACCTCGTCAGCAACTACTTGCCCTCCGTGTCGCTCTCTTCGCGCCGC------------CTCGCGCCCGACGAAGAGGCC---...---GACGGCACGCTCTTTGCCCACGTCGCGCTGTGCGTGCTAGGCCGCCGCGTCGGGACCATCGTCACGTACGACGCCACGCCGGACGCTTGCGTGGCGCCCTTCCGCCGGCTCTCGCCGCGCGCGCGCGCCGCCCTCCTCGCCAACGCGGAGGCCGCGCGCGCGGCCCTCGGCGACCGC---...............---------------GCCTGGCCGGTGCCCCGCGAGGCGCTGGCGCAAACGCTGCTCTCGACCGCCGTGAACAACATGCTCGTCCGGGACAAGTGGGACACCGTCTCGCGTCGCCGCCGCGAGGCGGGCATCGCG...GGCCACACGTACCTGCAGGCGAGCGCGGTGTTCCCGCTGCCGACCGGGGGG------GAGGGGCCAGAGCGCACGGGCGGGCGCGAGCGG................................................GCTCAAAAGAGCGCGGTCGCGGGCGGCGTC------------TGCATTGCGCTTCCCGTCGCGGGCGGACGCGCACGCCAGCCAGAG.......................................CTTCCGCCGGCACCGCCCCCGCCGCCCCCACCGCCT---------------------------..................------GCCATGAGCGCAGCGCACCAAGCCGGTGCGGCCTCGGCGCACCCCCTGCCG............GCTGGGGACTACGTGTACGTGCCGACTGCTCAGTACAACCAGTTGGTCGTCAGCCAGGCCCGGGGCGCAGCGATGACC---GCCGCGCCT---CCGCCGGCTCCGTATTTTTTGCCGGCCGCCGCCGCTGCCGCCGCCGCTCCGCCC
VP40_HHV11/37-365 GAGTTGGCATTGGATCCGGATACGGTGCGGGCGGCCCTGCCTCCGGATAAC---..................---CCACTCCCGATTAACGTGGACCACCGCGCTGGCTGCGAGGTGGGGCGGGTGCTGGCCGTGGTCGACGACCCCCGCGGGCCGTTTTTTGTGGGGCTGATCGCCTGCGTGCAGCTGGAGCGCGTCCTCGAGACGGCCGCCAGCGCTGCGATTTTCGAGCGCCGCGGGCCG---...---CCGCTCTCCCGGGAGGAGCGCCTGTTGTACCTGATCACCAACTACCTGCCCTCGGTCTCCCTGGCCACAAAACGC------------CTGGGGGGCGAGGCGCACCCC---...---GATCGCACGCTGTTCGCGCACGTCGCGCTGTGCGCGATCGGGCGGCGCCTCGGCACTATCGTCACCTACGACACCGGTCTCGACGCCGCCATCGCGCCCTTTCGCCACCTGTCGCCGGCGTCTCGCGAGGGGGCGCGGCGACTGGCCGCCGAGGCCGAGCTCGCGCTGTCCGGGCGC---...............---------------ACCTGGGCGCCCGGCGTGGAGGCGCTGACCCACACGCTGCTTTCCACCGCCGTTAACAACATGATGCTGCGGGACCGCTGGAGCCTGGTGGCCGAGCGGCGGCGGCAGGCCGGGATCGCC...GGACACACCTACCTCCAGGCGAGCGAAAAATTCAAAATGTGGGGGGCGGAGCCTGTTTCCGCGCCGGCGCGCGGGTATAAGAACGGGGCC................................................CCGGAGTCCACGGACATACCGCCCGGCTCG------------ATCGCTGCCGCGCCGCAGGGTGACCGGTGCCCAATCGTCCGTCAG.......................................CGCGGGGTCGCCTTGTCCCCGGTACTGCCCCCC------------------------------..................---------ATGAACCCCGTTCCGACATCGGGCACCCCGGCCCCCGCGCCGCCCGGC............GACGGGAGCTACCTGTGGATCCCGGCCTCCCATTACAACCAGCTCGTCGCCGGCCATGCCGCGCCCCAACCCCAG------------------CCGCATTCCGCGTTTGGTTTCCCGGCTGCGGCGGGGTCCGTGGCCTATGGGCCT
VP40_ILTVT/28-358 GAATATGAGCTTACTCGCGAGCAAAGCAAATCGGCTTTACCAGTTTTGCCTGGA..................---ACAATTCCGATAAACATTGACCACGAGTCATCCTGCGTGGTAGGTACAGTGCTGACGATCTTAGACCTGCCGAGAGGACTGTTTTGTTTGGGTGTCGTGTCAACTGCTCTTGCACCTATTTTTTTAAGCTACGTGCAAGATGATGCTCTTTTTGCGAATGCCGAAGAGGGG...ATGGTTTTGACGGAGACAGAGAAATTTCTCTATCTTCTCAGCAACATTCTACCTTCTCTATCGCTCTCTTCAAGGCGG------------CTTGAAAAGAACGAAGTGCCC---...---GGAAAAGATTTTTTTGCACACGTGGCGCTCTGTGAGTTGGGTAGACGTGAAGGCACGGTAGCAATTTACGGGGCCACCGCTTCGGAAGCTATTGGAGCATTTGATGATTTGAGCGCACCAATTAAAGAACAGCTGTATGAAATAGCTACACGTGAGAAATGTGCAGAAGTCCCT------...............------------------AGAGAGTTGTCGCGACCAGAAATTACGCGAGTCCTGATGAAGAAATTTATTCACGGGGCGTTTTTGATGGATAGGGGTACCTGTTTGAAAACGCGACGCGAGATGGCAGCTGTTTAC...AACCCGAAATATTTACAAGCGAATGAGGTAATAACCATAGGGATTAAGGAACACTCCGAAGAGACTCCTGAGAATGCTATTAAAGACCGT................................................------------TCAGTTTCTACGCAAACG---------------------GCCCCAAGCTTCGATATAAGCGAGAGTCAGCAACCG.......................................TCCGGGCAAACACACGTTCCAGCCATGGAGTCGGCGACATGCTCCGGC---------------..................------------CAGTTCTTGCAAACAAAAAACGGAGCTTCACCGTCCGCATCTCGT............---GAAGATATGGTCTATGTCCCATTCGAGAAGTATGCGAGTCTTCTTGCGGCATCAGCCCGC---AGAGATAACGACCGGAGACCCGTGTCGCCATCACGAGAGTTTTCCCGTAGGTCGCGGGACTCTACTCACGAATGTTCACCA
VP40_SCMVC/22-347 GAGCTGTTTCTGCCCTCGGGGGTGGTAGACCGCTGGTTGCGCGATTGCCGAGGC..................---CCGCTGCCCCTGAATGTCAATCACGACGAGTCGGCGACCGTGGGCTATGTGGCTGGGCTCCAGAATGTCCGGGCCGGCTTGTTCTGTTTGGGACGTGTTACGTCCCCCAAGTTTCTGGATATCGTTCAAAAAGCCTCGGAAAAATCCGAGTTGGTGTCCCGGGGACCTCCGtccGAGTCCTCGTTGCGGCCGGACGGCGTGTTGGAGTTTCTCAGCGGCAGTTATTCGGGCCTGTCGCTCTCCAGCCGC------CGAGATATAAACGCGGCCGATGGCGCCGCGGGCgatGCAGAAACAGCGTGCTTCAAACATGTGGCTCTGTGCAGCGTGGGCCGCCGCCGGGGCACGTTGGCGGTGTATGGCAGGCAGCCAGATTGGGTGATGGAACGTTTCCCGGATCTCACCGAGGCCGACCGGGAAGCGCTGCGAAAT------------CAGCTATCGGGAAGTGGGGAAGTTGCCgcgaaggaaagtgcgGAATCGTCTGCCGCCGCCGCCGTCGATCCCTTTCAGTCGGATTCGTACGGGCTGTTGGGGAACAGTGTGGACGCGCTGTACATTCAAGAGCGTCTCCCTAAGCTGCGCTATGACAAGCGGCTGGTCGGGGTCACGgctCGGGAGTCGTACGTGAAAGCCAGTGTTTCGCCCGCCGAGCAGGAGACGTGCGATATTAAAGTAGAAAAAGAGCGG---------------................................................------------CCGAAGGAGCCAGAGCAG---------------------------------AGCCACGTACCGACCGAGTCA---.......................................ATGTCTCACCCTATGAGCGCCGTGGCTACTCCGGCGGCCTCG---------------------..................---------------------ACCGTCGCGCCTTCTCAGGCGCCGCTGGCGCTGGCC............---CATGACGGTGTTTATTTACCTAAAGACGCTTTTTTCTCGCTCATCGGGGCCAGTCGT------------------CCCCTGGCCGAGGCGGCGGGAGCGCGCGCCGCGTATCCGGCTGTCCCGCCGCCA---CCCGCGTATCCG
VP40_HCMVA/31-415 GAATTGCTGTTGCCGCGGGACGTAGTGGAGCACTGGTTGCACGCGCAGGGCCAGggacagccttcgttgtcgGTCGCGCTCCCGCTCAACATCAACCACGACGACACGGCCGTTGTAGGACACGTTGCGGCGATGCAGAGCGTCCGCGACGGTCTTTTTTGCCTGGGCTGCGTCACTTCGCCCAGGTTTCTGGAGATTGTACGCCGCGCTTCGGAAAAGTCCGAGCTGGTTTCGCGCGGGCCC---...GTCAGTCCGCTGCAGCCAGACAAGGTGGTGGAGTTTCTCAGCGGCAGCTACGCCGGCCTCTCGCTCTCCAGCCGGCGCTGCGACGACGTGGAGGCCGCGACGTCGCTTTCGGGC...TCGGAAACCACGCCGTTCAAACACGTGGCTTTGTGCAGCGTGGGTCGGCGTCGCGGTACGTTGGCCGTGTACGGGCGCGATCCCGAGTGGGTCACACAGCGGTTTCCAGACCTCACGGCGGCCGACCGTGACGGGCTACGTGCA------------CAGTGGCAGCGCTGCGGC---------...............AGCACTGCTGTCGACGCGTCGGGCGATCCCTTTCGCTCAGACAGCTACGGCCTGTTGGGCAACAGCGTGGACGCGCTCTACATCCGTGAGCGACTGCCCAAGCTGCGCTACGACAAGCAACTAGTCGGCGTGACGgagCGCGAGTCATACGTCAAGGCGAGCGTTTCGCCT------GAGGCGGCGTGCGATATTAAAGCGGCGTCCGCCGAGCGTTCGGGCGACAGCcgcagtcaggccgccacgccggcggctggggcgcgcgttccctcttcgTCCCCGTCGCCTCCAGTCGAACCGCCATCTCCTGTACAGCCGCCTGCGCTTCCAGCGTCGCCGTCCGTTCTTCCCGCGGAATCACCGccgtcgctttctccctcggagccggcagaggcggcgtccATGTCGCACCCTCTGAGTGCTGCGGTTCCCGCCGCTACGGCTCCTCCAGGT------------..................---------GCTACCGTGGCAGGTGCGTCGCCGGCTGTGTCGTCTCTAGCGTGGCCT............---CACGACGGAGTTTATTTACCCAAAGACGCTTTTTTCTCGCTACTTGGGGCCAGTCGCTCGGCAGTGCCCGTCATGTATCCCGGCGCCGTAGCGGCCCCTCCTTCTGCTTCGCCAGCACCGCTGCCTTTG---CCGTCTTATCCC
VP40_HHV7J/21-315 AACTTTTATCTGCCAAGGAGGACGATACAAGAAGAAATCAATTCCGGAAATGGT..................TTGAATATTCCATTGAATATAAACCACAATGAAAATGCCGTTATAGGCACAGTCTCTTCTTTAAGTGTTTACAGCACG---GTTTGTTTCGTTGCCCGTGTTCAATCAAAGGAATTCCTTACAATAATTAAGAAAATAGCTGCAAAATCTAAGCTGATAACCAAC------ACGgaaGAAAAAACTCTGCCACCAGATCCCGAAATAGAGTGTTTAAATTCAATTTTCCCAGGTTTGTCATTATCGAACAGG---------------GTTGGTGGCAATGAA---------...---CGTGATCCGTTTTTTAAACATGTCTCTATCTGTGGCGTTGGTCGTCGACCTGGAACAATAGCTATTTTTGGACGAAATTTAAATTGGATTCTGGATAGATTTTCTTCTATTACAGAAGCGGAAAAAGAAAAGATTCTGAGC------------ACAGATCAAAGCTGTGTT---------...............---------CAGTTTTTTGCCGAGGAACAATTTAAAGTGGATTTATATGATCTGCTAGCGGATAGTTTAGACACTTCGTACATAAAAGTACGTTTTCCAAAATTACAGTCTGATAAGCAACTTAGTGGAATTTCA...AAATCTACTTATATTAAAGCGAGTGAAAATTTA------ACGGCTAACAACCATACTATTAACGTGAATTCAAAA---------------................................................---------------GTCACAAAGGAGACA---------------------------------GAAGCAACAGACAGCGTTTCA---.......................................---CAAGATGATTGCGCAGTCCATGCACCAGATTTGATAAGT---------------------..................------------------------ACGATTTGCTCGACAACGCACACAACGCAT---............---CACGACCTAGTCAGAATGAATGGCTCAGCTACTGGCAACTCAGCTAGTCTTCCCGCT------------------------CCTCAGTTTTCCGAATGT---GTTTTTTTACCGAAAGATACATTTTGC---TCCTTACTGAAT
VP40_SHV21/21-310 GTGCTTTATCTTAATTTGGATGATGTGTCAAAATGTTTGCCATTGACTAAG---..................---CCAATACCCTTAAACATAGAGCATCTACCTGAGTCTACTATAGGCCACACTATTGGCTTATATGCTGTCACCCATGGAGTTTTTTGTGTGGGGGTTATTCATTCTGAGAAATTTCTGCATTTAACAGAAAACTTGTTTAGTAATTCATGTGTAGCTCAGGCTACAAGC---...---AAGTTTCTTCCTTATCAGCCTTTACTGGAGATGCTTCACACATGGTTACCTGCCTTGTCTTTATCATCGCTTTGCCCA---------ACTGCTCAAAATGCGGCTAAC---...------ACTAACATGTTTCAACATGTATCTTTATGTGCTTTAGGGAGAAGGAGAGGCACAGTAGCCGTGTATAGCATGAACTTAGAAGATGCAATAAGTCAGTTTTGTTCAATTTCACAAGCAGAAGTTGAAAATATTTATCAA------------GATTCTAAAAATGTAGAC---------...............------ATAAATTCTCTTCCGAAGCCAGTATTTAACATAGATCCTCACATATTAATGGCTAAGGCCATAGATGCTGGATTTATAAAAGATAGGCTTCAGCTGTTAAAAACTGACAAAGGGGTTGCTAAAATTAAA...AAATTGACATATTTAAAAGCTAGTGAAATTGGT------AAGCCAGTCACAGAAGACATTTCTGAAGACATGAAT---------------................................................---------------------------------------------------------------------------CAGCACGGA---.......................................---------------------ATTGTGCCACAAGGA---------------------------..................---------------------TCTGACGATTTAATCAGTGTTCCTAAGTCTACATTT............---CTTTCTATGTTACAAAACAATCTTGATAATTTTAAACAACACCCTAGACCAGCTTGCTTTCCCCAATATTTTTCTCCTCAAGGAGCTTACATGCCTTACGAGCTTTACCCTCCTCAGCCGTACTCA------GGAGACAATATT
VP40_EHV2/58-381 GCCTTATATCTCAACCCCGCGGACGTGGGGGCTCATCTGCCTCTCCCGGGC---..................---CCGATCCCATTGAATGTGGAGCACCTTCAGGAGGCGCACGTGGGATGGACCCTGGGGCTGCACCTCACGCGCTACGGCCTGTTCTGCGTGGCGGTCATCACGGCCGAGGAGTTCTTCACGCTGCTGGACAGGCTCTGCGCCGCGTCCAGCGTGGCGAGGACCAGGGCGGAC...---CACCACCTGCCCCCCAACCCCACCCTGGAGATGCTGCACACGTGGCTGCCAGAGCTCTCCCTGTCCTCCATCCACCCG---------GACGCCCTGCCCGGGGCCAAGGGG...GGCGACACCCCCATCTTCCAGCACGTGGCCCTGTGTGCCATGGGCCAGAGGAGGGGCACGGTCGCTGTGTACGGGGAGAGCCTGGACTGGATCCTGTCAAAGTTCACCTCCCTGAGCCCGGAGGAGAGGGGCGCCATCGCGGAG------------GGCTACGCGTCCCCGGCC---------...............------CCCGAGAGCCTGCCCGAGCCCCATTTCACCTGTTCCAATGAGATATTGATGGCGAAGGCCATAGACGCGGGGTTCATCAAAAACAGGCTGGAGATCCTAAAGACTGACAAGGGGGTGGCGGAAGTCAAA...GCGCCGACGTATTTAAAGGCCAGCGTCCAGGGG------CTGCCCGCCAATCTAGACGAGGTAGACTCTGCTCGGGGC------------................................................------------GGCGAAGACCCTCCCACGGCAGCCATCGCCACCACCCCCCATCCGGCGACAGACGCAACTACCATGAACCAGCAG.......................................------CAACCCTTCGCGGCCCAGGCCCCGGCGGGCGGC------------------------..................---------------------TGCGAGGATCTCATCAGCGTGCCCCGGAGCACGTTC............---ATGACCATGCTCCAGACCAACCTGGACACCATGAGGCAGACCTCCCTGGGGCAGAGGTTCGGACAGCCCATCGACGCCCCG---GCCGCGCCTCCCGCCCAGCTGAGGGTGCCGCCCCCGGCCGCGCCCTTCCCCGTGCACCCG
VP40_EBV/24-327 TGCCTTCACCTGGATCCCCTCACCGTCAAGAGCCAGCTCCCTCTGAAGAAG---..................---CCCTTGCCACTCACGGTGGAACACCTGCCGGATGCTCCGGTCGGCTCAGTCTTTGGCCTTTACCAGAGCCGAGCGGGTCTCTTTAGCGCAGCCTCGATTACCTCTGGGGACTTCCTGTCCCTGCTGGACTCAATTTACCACGATTGCGATATTGCACAGAGTCAGCGC---...---CTGCCCCTCCCTCGAGAACCCAAGGTGGAGGCTCTGCACGCCTGGCTCCCCTCACTGTCACTGGCCTCCCTCCACCCA---------GACATACCCCAAACCACCGCAGATggaGGCAAGCTGTCCTTCTTTGACCACGTGTCTATCTGTGCCCTGGGTCGTCGGCGCGGCACCACGGCAGTCTACGGTACAGACCTTGCGTGGGTCCTGAAGCACTTTAGTGACCTGGAACCGTCTATCGCCGCCCAGATTGAGAATGACGCCAATGCCGCAAAGCGTGAATCCGGA---------...............------------------TGCCCGGAAGACCACCCTCTGCCCCTCACGAAGCTCATAGCTAAGGCAATCGATGCTGGATTTCTGAGAAACCGCGTGGAGACTCTGAGGCAGGACAGGGGTGTGGCCAATATCCCA...GCCGAGTCGTATTTAAAGGCCAGCGACGCCCCGGACCTACAAAAGCCGGAC------------AAGGCACTTCAG---------------................................................------------------AGCCCACCACCG---------------------------------------GCCTCCACAGACCCA---.......................................---GCCACCATGCTATCAGGTAACGCAGGAGAAGGA---------------------------..................---------------------GCAACAGCCTGCGGAGGTTCGGCCGCCGCGGGC---............---CAGGACCTCATCAGCGTCCCCCGCAACACCTTTATGACACTGCTTCAGACCAACCTGGACAACAAACCGCCGAGG---CAGACCCCGCTACCCTACGCGGCCCCGCTGCCCCCCTTTTCCCACCAGGCAATAGCCACCGCGCCT