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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00560 - LRR_1)
Leucine Rich Repeat
(Pfam reference: accession no. PF00560)
(Interpro reference: accession no. IPR001611)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
2562 sequences @ 46 aa
(ave. pairwise identity: 0.21)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 1815.23)
nucleotides
(available for above)
2453 sequences @ 138 bp
(ave. pairwise identity: 0.36)
New Hampshire format
(total tree length: 0.00)
amino acids, restricted set
(corresp. to available nt seqs)
2453 sequences @ 46 aa
(ave. pairwise identity: 0.21)
New Hampshire format
(total tree length: 1697.79)