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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00545 alignment
(20 sequences with 115 aa)


RN_BACIN/63-162 ADYLIRYKRLPDNyitKSQASALGWVASKGNLAeVAPGKSIGGDVFSNR..EGRLPSA.SGRTWREADINYVS......--G---FRNADRLVYSSD-WLIYKTTDHYATFTRIR
RN_BACPU/63-162 ADYLIRYKRLPDNyitKSQASALGWVASKGNLAeVAPGKSIGGDVFSNR..EGRLPSA.SGRTWREADINYVS......--G---FRNADRLVYSSD-WLIYKTTDHYATFTRIR
RN_BACCO/10-109 ADYLIRYKRLPDNyitKSQASALGWVASKGNLAeVAPGKSIGGDVFSNR..EGRLPSA.SGRTWREADINYVS......--G---FRNADRLVYSSD-WLIYKTTDHYATFARIR
RN_BACCI/11-110 ADYLLTYHKLPDNyitKSEAQALGWVASKGNLAdVAPGKSIGGDIFSNR..EGKLPAK.SGRTWREADINYTS......--G---FRNSDRILYSSD-WLIYKTTDHYKTFTKIR
RNBR_BACAM/58-157 ADYLQTYHKLPDNyitKSEAQALGWVASKGNLAdVAPGKSIGGDIFSNR..EGKLPGK.SGRTWREADINYTS......--G---FRNSDRILYSSD-WLIYKTTDHYQTFTKIR
RNST_SACER/9-99 GFEQVRLADLPP-...-EATDTYELIEKGG--P.-YP-YPEDGTVFENR..EGILPDC.AEGYYHEYTVKTPS......--GD--DRGARRFVVGDG-GEYFYTEDHYESFRLTI
RNS3_STRAU/49-138 --GRVCYSALPS-...-QAHDTLDLIDEGG--P.-FP-YSQDGVVFQNR..EGLLPAH.STGYYHEYTVITPG......--SP--TRGARRIITGQQWQEDYYTADHYASFRRVD
RNSA_STRAU/2-93 VSGTVCLSALPP-...-EATDTLNLIASDG--P.-FP-YSQDGVVFQNR..ESVLPTQ.SYGYYHEYTVITPG......--AR--TRGTRRIITGEATQEDYYTGDHYATFSLID
RNU1_USTSP/7-100 NCGGTYYSSTQVN...RAINNAKSGQ-------.--YSSTGYPHTYNNY..EGFDFSDyCDGPYKEYPLKTSS......SGYTGGSPGADRVVYDSNDGTFCGAITHTGASGNNF
RNT1_TRIHA/4-100 TCGKVFYSASAVS...AASNAACNYVRAGS---.-TAGGSTYPHVYNNY..EGFRFKG.LSKPFYEFPILSSG......KTYTGGSPGADRVVINGQC-SIAGIITHTGASGNAF
RNF2_GIBBA/5-99 TCSSKPYSAQQVR...AAANAACQYYQSND---.-TAGSTTYPHTYHNY..EGFDFA-.VNGPYQEYPIRTSG......-VYSGGSPGADRVIINTQC-QFAGAITHTGASGNQF
RNF1_GIBBA/4-98 TCGSTPYSASQVR...AAANAACQYYQSDD---.-TAGSTTYPHTYNNY..EGFDFA-.VNGPYQEFPIRTGG......-VYSGGSPGADRVIINTSC-QYAGAITHTGASGNNF
RNF1_GIBFU/30-124 TCGSTNYSASQVR...AAANAACQYYQNDD---.-TAGSSTYPHTYNNY..EGFDFP-.VDGPYQEFPIKSGG......-VYTGGSPGADRVVINTNC-EYAGAITHTGASGNNF
RNT1_ASPOR/31-126 TCGSNCYSSSDVS...TAQAAGYQLHEDGE---.-TVGSNSYPHKYNNY..EGFDFS-.VSSPYYEWPILSSG......DVYSGGSPGADRVVFNENN-QLAGVITHTGASGNNF
RNPC_PENCH/5-98 TCGSVCYTSSAIS...AAQEAGYDLYSAND---.-DVSN--YPHEYRNY..EGFDFP-.VSGTYYEFPILRSG......AVYSGNSPGADRVVFNGND-QLAGVITHTGASGNNF
RNPB_PENBR/5-98 TCGTVCYTSSAIS...SAQAAGYNLYSTND---.-DVSN--YPHEYHNY..EGFDFP-.VSGTYYEFPILKSG......KVYTGSSPGADRVIFNDDD-ELAGVITHTGASGNNF
RNC2_ASPCL/5-100 TCGSHCYSASAVS...DAQSAGYQLESAGQ---.-SVGRSRYPHQYRNY..EGFNFP-.VSGNYYEWPILSSG......STYNGGGPGADRVVFNDND-ELAGLITHTGASGDGF
RNMS_ASPSA/6-99 TCGSTCYWSSDVS...AAKAKGYSLYESGD---.-TIDD--YPHGYHDY..EGFDFP-.VSGTYYEYPIMSDY......DVYTGGSPGADRVIFNGDD-ELAGVITHTGASGDDF
RNN1_NEUCR/54-149 ICGSVCYSSSAIS...AALNKGYSYYEDGA---.-TAGSSSYPHRYNNY..EGFDFP-.TAKPWYEFPILSSG......RVYTGGSPGADRVIFDSH-GNLDMLITHNGASGNNF
RNU2_USTSP/8-109 NCGGNVYSNDDIN...TAIQGALDDVANGD---.-RPDN--YPHQYYDEasEDITLCC.GSGPWSEFPLVYNGpyyssrDNYV--SPGPDRVIYQTNTGEFCATVTHTGAASYDG