EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00524 - PPV_E1_N)
E1 Protein, N terminal domain
(Pfam reference: accession no. PF00524)
(Interpro reference: accession no. IPR001177)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
26 sequences @ 167 aa
(ave. pairwise identity: 0.38)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 12.40)
nucleotides
(available for above)
24 sequences @ 501 bp
(ave. pairwise identity: 0.50)
New Hampshire format
(total tree length: 7.78)
amino acids, restricted set
(corresp. to available nt seqs)
24 sequences @ 167 aa
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 11.30)