EMBL-EBI > Goldman Group

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pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00513 alignment
(26 sequences with 1764 bp)


VL2_PCPV1/5-456 AGG---...---CCTCGCAGACGCAAACGTGCGTCTGCTACACAGTTATATCAAACCTGCAAAGCTTCTGGTACATGTCCTCCTGATATTATTGCAAAGGTAGAACAAAATACTCTTGCAGATAAAATATTAAAGTGGGGAAGTTTAGGAGTGTTTTTTGGGGGGCTTGGTATTGGCACAGGGTCTGGTACTGGCGGTAGAACTGGATATGTTCCTGTACAGACT------------GCCCCACGCCCTGCCATACCCTTTGGGCCTACTGCACGTCCTCCTATTATTGTTGAT---------------------------------ACAGTTGGCCCTAGTGACTCGTCTATTGTATCCTTAGTAGAAGATTCAACT...............---------.....................------------------ATTATTAATTCAGCAGCGTCTGACTTTGTGCCTCCTATTCGTGAG---------GGATTTGAAATAAGCACCTCTGAAACT.........ACTACTCCAGCCATTTTAGATGTATCT------------GTAACAACACACAAC---ACTACCTCTACAAGTATATTTAAAAATCCTGCCTTTGCAGAACCTTCTATTGTTCAGTCACAACCC---TCAGTTGAAGCAAGTGGACACGTTCTTACATCTACATAT------ACATCTACTATTTCCTCTCACTCT...........................---------GTAGAAGACATTCCATTGGATACTTTTATTGTATCTTCATCA......GATAGT---AATCCTGCATCCAGTACTCCTGTGCCTACACCTGTGGCACGTCCACGACTTGGC......---CTTTATAGTAAAGCGTTGCAGCAA---GTGCAGGTTACTAATCCTGCCTTTTTATCATCGCCACAACGC------......CTTATAACTTTTGATAACCCTGCTTATGAAGGTGAAGAT...---ATAAGTTTACAGTTTCAGCACAATACT...---ATACATAACCCTCCTGATGACGCTTTTATGGATATTGTAAGATTACATAGGCCGGCTATAACGTCT---AGGCGTGGTATTGTTAGGTTTAGTAGAATTGGTCAGCGAGGGTCCATGTATACACGCAGTGGCAAACATATTGGTGGACGGGTACATTTTTATACAGACATTTCTCCTATATCTGCAGCTGCA......---......---GAGGAACTTGAAATGCAGCCTCTTGTGGCTGCTGCGCAGGATGACAGT------------------------...------...---------GGATTATTTGATGTTTATGTAGACCCT------------ACCCCTGGTCCTGTA---------------............---GCAGTACAAAATATGTCGTATCCC------------TCC------TCCACATCGTTTGTACGGTCCTCTATGTTTACCACTAAGTGGGGTAATACTACTGTCCCTTTATCATTACCAAGTAACATATTTGCACAGCCAGGCCCTGATATAATATTT...---------------CCCGCCGCCCCT...---GGTGTACCACCGTATAACCCTGTTATACCGTCTTTACCTATAACTCCTATTTTTATTAGTGGGTCT------------CAATTTTATTTACATCCTTCCTTATATCTTGCACGC...---AAACGTCGTAAACGTGTTTCCTTG
VL2_HPV13/5-456 AGG---...---GCTCGCAGACGCAAACGCGCTTCAGCTACACAACTATATCAAACTTGTAAGGCTTCTGGAACATGTCCTCCTGATGTTATACCAAAGGTTGAACAAAACACTCTTGCAGATAAAATATTAAAGTGGGGCAGTTTAGGAGTATTTTTTGGGGGGCTTGGCATTGGCACAGGCTCTGGTACTGGCGGTAGGACTGGCTATGTACCAGTAGGATCC------------ACCCCACGCCCTGCCATATCAACTGGGCCTACTGCACGTCCTCCTATTGTTGTTGAT---------------------------------ACTGTTGGGCCTACAGACCCTTCTATTGTATCTTTGGTAGAGGAATCAGCT...............---------.....................------------------ATTATTAATTCTGGAGTACCTGACCCTTTGCCTCCCGTTCATGGG---------GGTTTTGAAATCACCACATCTCAATCA.........GCCACTCCAGCAATATTGGATGTGTCT------------GTTACAACACAAAAC---ACTACGTCCACAAGTATATTTAGAAATCCTGTTTTTTCAGAACCTTCTATTACACAATCTCAACCT---TCTATTGAAAGTGGTGCACACGTGTTTATATCG------------CCATCTACTATTTCCCCTCATTCT...........................---------ACAGAAGACATTCCTTTAGATACATTTATTGTATCTTCCTCA......GATAGT---AATCCTGCATCAAGCACCCCTGTTCCAGCAACTGTTGCACGTCCACGTCTAGGC......---CTTTACAGTAGGGCCTTACATCAA---GTACAGGTTACTGATCCTGCCTTTTTATCGTCGCCCCAACGC------......CTTATAACCTTTGATAACCCTACATATGAAGGTGAAGAT...---ATAAGTTTGCAGTTTGCACACAATACC...---ATTCATGAACCCCCTGATGAGGCATTTATGGATATTATAAGACTACATAGGCCAGCCATAACATCA---CGGCGTGGTCTTGTTAGGTTTAGTAGAATTGGTCAGAGGGGGTCTATGTATACTCGAAGCGGCAAGCATATAGGTGGAAGGGTCCATTTCTTTAAGGATATTTCTCCTATATCTGCAGCTGCA......---......---GAAGAAATAGAATTACACCCCCTTGTGGCTGCTGCACAGGATCACAGT------------------------...------...---------GGTTTGTTTGATATTTATGCAGAACCT------------GACCCTGACCCTGTG---------------............---GCTGTAAACACCTCTGGGTCATTG------------TCTTCTGCCTCCACACCATTTGCACAATCTTCTTTGTCTTCCGCCCCATGGGGTAATACTACTGTTCCTCTTTCACTACCAGGTGATATATTTATACAGCCTGGTCCTGACATAACATTC...---------------CCAACTGCACCT...---ACAGTAACGCCTTATAATCCTGTTACGCCTGCTTTACCTACAGGTCCTGTTTTTATTACTGCTTCT------------GGATTTTATTTATATCCTACATGGTATTTTACACGC...---AAACGCCGTAAACGTGTTTCCTTG
VL2_HPV11/4-448 AGG---...---GCACGCAGACGTAAACGTGCGTCAGCCACACAACTATATCAAACATGCAAGGCCACTGGTACATGTCCCCCAGATGTAATTCCTAAAGTTGAACATACTACTATTGCAGATCAAATATTAAAATGGGGAAGCTTAGGGGTTTTTTTTGGTGGGTTAGGTATTGGTACAGGGGCTGGTAGTGGCGGTCGTGCAGGGTATATACCCTTGGGAAGC------------TCTCCCAAGCCTGCTATTACTGGGGGGCCAGCAGCACGTCCGCCAGTGCTTGTGGAG---------------------------------CCTGTTGCCCCTTCCGATCCCTCCATTGTGTCCTTAATTGAGGAGTCTGCT...............---------.....................------------------ATTATTAATGCTGGTGCACCTGAGGTGGTACCCCCTACACAGGGT---------GGCTTTACTATAACATCATCTGAATCG.........ACTACACCTGCTATTTTAGATGTGTCT------------GTTACCAATCAC---------ACTACCACTAGTGTGTTTCAAAATCCCCTGTTTACAGAACCGTCTGTAATACAGCCCCAACCA---CCTGTGGAGGCCAGTGGTCACATACTTATATCT------------GCCCCAACAATAACATCCCAACAT...........................---------GTAGAAGACATTCCACTAGACACTTTTGTTGTATCCTCTAGT......GATAGT---GGACCTACATCCAGTACTCCTCTTCCTCGTGCTTTTCCTCGGCCTCGGGTGGGT......---TTGTATAGTCGTGCCTTACAGCAG---GTACAGGTTACGGACCCCGCGTTTTTGTCCACGCCACAGCGA------......TTGGTAACTTATGACAACCCTGTCTATGAAGGAGAAGAT...---GTAAGTTTACAATTTACCCATGAGTCT...---ATCCACAATGCACCTGATGAAGCATTTATGGATATTATTAGACTACATAGACCAGCTATAACGTCC---AGACGGGGTCTTGTGCGTTTTAGTCGCATTGGGCAACGGGGGTCCATGTACACACGCAGTGGACAACATATAGGTGCCCGCATACATTATTTTCAGGACATTTCACCAGTTACACAAGCTGCA......---......---GAGGAAATAGAACTGCACCCTCTAGTGGCTGCAGAAAATGACACG---------------------------...------...---------------TTTGATATTTATGCTGAACCA---TTT------GACCCTATCCCTGAC---------------............---CCTGTCCAACATTCTGTTACA---------------------CAGTCTTATCTTACCTCCACACCTAATACCCTTTCACAATCGTGGGGTAATACCACAGTCCCATTGTCAATCCCTAGTGACTGGTTTGTGCAGTCTGGGCCTGACATAACTTTT...---------------CCTACTGCATCT...---ATGGGAACACCCTTTAGTCCTGTAACTCCTGCTTTACCTACAGGCCCTGTTTTTATTACAGGTTCT------------GACTTCTATTTGCATCCTACATGGTACTTTGCACGC...---AGACGCCGTAAACGTATTCCCTTA
VL2_HPV07/5-455 AGG---...---CCCCGTAGGCGTAAGCGGGCGTCCGCAACACAGTTATATCAAACATGCAAGGCAGCAGGCACCTGTCCACCAGATGTTGTTAATAAGGTGGAGCAAACAACCGTTGCAGATCAAATTTTAAAATGGGGCAGCATGGGAGTGTTTTTTGGCGGTCTTGGCATAGGTTCAGGCTCTGGCTCAGGCGGCCGTGCTGGCTATGTGCCTTTGTCTACAGGTTCCCGTGCAATACCTCCTAAATCATTAGCTCCAGATGTTATTGCTAGGCCGCCTGTTGTGGTGGAT---------------------------------ACTGTCGCCCCCACTGATCCATCCATTGTATCTTTAATTGAGGAAAGTAGT...............---------.....................------------------ATTATTCAGTCTGGGGCTCCTTCGCCAGTAATTCCCACAGAGGGT---------GGGTTTTCAATAACATCATCAGGTACA.........GATGTCCCTGCAATTTTAGATATATCT------------TCTACTAATACAGTA---CATGTTACATCTACCACACACCATAACCCCATATTTACTGATCCTTCGGTTGTGCAGCCTATTCCA---CCTGTAGAGGCTAGTGGTCGTATCATTGTGTCG------------CATTCCTCTATTACTACTGGTGCA...........................---------GCTGAAGAAATACCTATGGACACATTTGTTGTTCATAGT---......---------GATCCACTGTCCAGTACACCTGTGCCTGGTGTGTCAGCGCGGCCTAAAGTTGGG......---CTATATAGCAAAGCTTTGCAGCAA---GTAGAAATAGTAGATCCAACATTTATGTCCACCCCTCAACGT------......TTAATTACTTATGACAATCCTGTATTTGACAACATTGAA...---GATACACTACATTTTGAACAGCCTTCT...---ATTCATAACGCACCAGATCCTGCCTTTATGGATATCATTACTTTACATAGGCCTGCCTTGACCTCT---AGGCGTGGTGTGGTACGTTTTAGTAGGGTGGGTCAACGTGGAACCATGTATACACGTCGTGGTACCCGTATTGGTGGTCGTGTACACTTTTTTAAAGATATTAGTCCTATAGCTTCATCT---......---......---GAAGAAATTGAATTGCACCCTCTAGTGGCCTCACCT------------------------------------...------...AATAACAGTGACCTTTTTGATGTTTATGCAGATATA---GAT------GATATTGATGAAAAT---------------............---ATATTATATTCTACTATAGACAAT------------AATACACCAACTTCTACCTATTCCTTGTATCCAGGTAATTCTACACGCATAGCAAATACATCTATACCTCTTGCCACAATTCCTGATACATTCTTAACATCTGGTCCTGACATAGTGTTT...---------------CCTTCTGTTCCT...---GCAGGTACACCATATTTGCCTGTGTCACCTTCTATACCTGCCATATCTGTACTGATTCGCGGTACT------------GATTATTATTTGAATCCTGCATACTATTTCAGA---...---AAACGCCGAAAGCGCATATTAGCA
VL2_HPV52/5-457 CGG---...TCTACACGGCAC---AAACGTGCTTCTGCAACACAGCTATATCAAACATGCAAAGCCTCTGGCACCTGCCCCCCCGATGTTATTCCTAAAGTGGAAGGCACAACTATTGCAGATCAACTTTTAAAATATGGCAGCCTAGGGGTGTTTTTTGGAGGTTTGGGTATAGGTACAGGTGCAGGCTCTGGTGGTAGGGCAGGCTATGTGCCATTGTCC------------ACTCGTCCTCCCACTAGTAGTATTACCACGTCCACCATTCGTCCCCCTGTAACTGTAGAA---------------------------------CCCATTGGTCCCTTAGAACCATCTATAGTTTCTATGATAGAAGAAACAACA...............---------.....................------------------TTTATTGAGTCTGGCGCACCTGCTCCATCTATTCCATCAGCAACA---------GGGTTTGATGTTACAACATCTGCAAAT.........AATACTCCTGCAATAATTAATGTAACA------------TCTATAGGTGAATCATCTGTACAATCAGTTTCTACACATTTAAATCCTACATTCACTGAACCATCTATAATACAGCCCCCGGCA---CCTGCAGAAGCATCTGGTCATGTATTGTTTTCT------------AGTCCAACTATTAGTACACACACC...........................---------TATGAAGAAATCCCTATGGATACATTTGTTACCTCTACTGAC......AGCAGC---AGTGTAACAAGTAGTACACCTATTCCAGGGTCTCGCCCTACGACACGCCTTGGT......---TTATATAGCCGTGCCACACAACAG---GTTAAGGTAGTCGACCCTGCTTTTATGTCATCACCACAGAAA------......TTAGTAACATATAACAATCCTGTTTTTGAGGGCGTTGATacaGATGAAACTATAATTTTTGATCGTTCACAA...---CTTTTACCTGCACCGGATCCTGATTTTTTAGACATTATAGCTTTGCATAGGCCTGCATTAACCTCT---CGAAGAGGTACTGTTAGGTTTAGCAGGCTTGGTAATAAGGCCACCCTACGTACACGTAGTGGAAAACAAATTGGGGCACGGGTACATTATTATCATGATATTAGTCCTATCCAGCCT------......GCTgaagttCAGGAAGACATAGAATTGCAACCTTTATTACCA------------------------------CAGTCTGTGTCC...CCTTACactATTAATGATGGTTTGTATGATGTGTATGCAGATTCT------------TTGCAGCAACCCACG---------------............---TTTCACTTACCT---------------------------------TCCACACTTTCTACCCATAATAAT---ACTTTCACTGTACCTATTAATAGTGGTATTGACTTTGTATATCAACCCACTATGTCCATTGAGTCAGGTCCTGACATTCCATTA...---------------CCTTCGTTACCC...---ACACATACTCCTTTTGTTCCTATAGCCCCTACAGCTCCATCTACATCTATTATTGTTGATGGTACA------------GATTTTATTTTACATCCTAGTTATTTTTTACTACGT...---CGCAGGCGTAAACGTTTTCCATAT
VL2_HPV33/5-458 CGA---...TCTACAAGGCGC---AAGCGTGCATCTGCAACACAACTATACCAAACATGCAAGGCCACAGGCACCTGCCCACCCGATGTTATTCCTAAAGTGGAAGGAAGTACCATAGCAGATCAAATTCTTAAATATGGCAGTTTAGGGGTTTTTTTTGGTGGTTTAGGTATTGGCACAGGCTCTGGTTCAGGTGGAAGGACTGGCTATGTACCTATTGGT------------ACTGACCCACCTACAGCTGCAATCCCCTTGCAGCCTATACGTCCTCCGGTTACTGTAGAC---------------------------------ACTGTTGGACCTTTAGACTCGTCTATAGTGTCATTAATAGAAGAAACAAGT...............---------.....................------------------TTTATAGAGGCAGGTGCACCAGCCCCATCTATTCCTACACCATCA---------GGTTTTGATGTTACTACATCTGCAGAT.........ACTACACCTGCAATTATTAATGTTTCA------------TCTGTTGGGGAGTCATCTATTCAAACTATTTCTACACATTTAAATCCCACATTTACTGAACCATCTGTACTACACCCTCCAGCG---CCTGCAGAAGCCTCTGGACATTTTATATTTTCT------------TCCCCTACTGTTAGCACACAAAGT...........................---------TATGAAAACATACCAATGGATACCTTTGTTGTTTCCACAGAC......AGTAGT---AATGTAACATCAAGCACGCCCATTCCAGGGTCTCGCCCTGTGGCACGCCTTGGT......---TTATATAGTCGCAATACCCAACAG---GTTAAGGTTGTTGACCCTGCTTTTTTAACATCGCCTCATAAA------......CTTATAACATATGATAATCCTGCATTTGAAAGCTTTGACcctGAAGACACATTACAATTTCAACATAGTGAT...---ATATCACCTGCTCCTGATCCTGACTTTCTAGATATTATTGCATTACATAGGCCTGCTATTACATCT---CGTAGACATACTGTGCGTTTTAGTAGAGTAGGTCAAAAAGCCACACTTAAAACTCGCAGTGGTAAACAAATTGGAGCTAGAATACATTATTATCAGGATTTAAGTCCTATTGTGCCTTTAGACcacaccGTGccaaatGAACAA---TATGAATTACAGCCTTTACATGAT------------------------------ACTTCTACATCG...TCTTATagtATTAATGATGGTTTGTATGATGTTTATGCTGACGAT------------GTGGATAATGTACAC---------------............---ACCCCAATGCAA------CAC---------------TCA---TACAGTACGTTTGCAACAACACGTACCAGCAATGTGTCTATACCTTTAAATACAGGA---------TTTGATACTCCTGTTATGTCT---------GGCCCTGATATACCTTCC...---------------CCTTTATTTCCC...---ACATCTAGCCCATTTGTTCCTATTTCGCCTTTTTTTCCTTTTGACACCATTGTTGTAGACGGTGCT------------GACTTTGTTTTACATCCTAGTTATTTTATTTTACGT...---CGCAGGCGTAAACGTTTTCCATAT
VL2_HPV35/5-460 AGG---...TCTACAAAACGTGTTAAACGTGCATCTGCAACACAACTATATCGTACTTGCAAAGCTGCAGGAACTTGTCCACCAGATGTTATACCTAAGGTTGAGGGTAATACTGTTGCTGATCAAATTTTAAAATATGGCAGCATGGCTGTGTTTTTTGGGGGGTTAGGAATTGGTTCTGGATCTGGCACAGGTGGAAGATCTGGATATGTTCCACTGGGT------------ACAACACCTCCAACGGCTGCC---ACAAACATTCCTATACGACCCCCTGTAACTGTGGAAAGTATA------------------CCATTAGACACAATTGGCCCTTTAGATTCTTCTATAGTGTCATTAGTAGAGGAAACTAGT...............---------.....................------------------TTTATTGAGTCTGGTGCCCCTGTTGTTACACCAAGGGTCCCACCT---ACAACAGGTTTTACAATAACCACATCTACAGAT.........ACCACACCTGCTATTTTAGATGTG------------------------------------ACATCCATAAGTACACATGATAATCCTACTTTCACTGATCCTTCTGTTTTACACCCACCCACG---CCTGCAGAAACTTCAGGTCATTTTGTACTTTCA------------TCATCTTCTATTAGTACACATAAT...........................---------TATGAAGAAATCCCTATGGATACTTTTATTGTTTCCACAGAC......AGCAAT---AATATAACTAATAGCACGCCTATTCCAGGGTCTCGCCCTACGACACGCCTAGGA......---TTATATAGTAAAGGTACCCAGCAG---GTTAAGGTTGTTGACCCTGCCTTTATGACTTCTCCTGCAAAA------......CTTATTACATATGATAATCCTGCATATGAAGGCCTTAACcctGATACAACCTTACAATTTGAGCATGAGGAT...---ATTAGCTTAGCTCCGGATCCTGACTTTATGGACATTATAGCTTTACATAGGCCTGCACTAACATCT---AGGAAAGGCACTATTAGATATAGTAGAGTAGGTAATAAACGTACTATGCATACACGAAGTGGAAAAGCTATAGGGGCACGGGTACATTATTATCAGGATTTAAGTAGTATTACT---------......---......---GAAGATATAGAATTACAACCCTTACAA---CATGTACCATCCTCTTTA---------CCACATACCACTGTT...TCAACAtcaTTAAATGATGGTATGTTTGATATTTATGCTCCTATA------------GATACTGAGGAAGAT---------------............---ATTATATTTTCAGCATCTTCT---------------AAC------AATACTTTATATACTACATCTAACACT---GCATATGTTCCTAGCAATACTACTATACCATTAAGTAGTGGCTATGATATTCCTATAACAGCAGGGCCAGACATTGTATTT...---------------AACTCTAATACT...---ATTACTAACACTGTACTACCGGTACCCACAGGT---CCTATATATTCTATTATTGCAGATGGGGGT------------GACTTTTATTTACACCCTAGTTATTATTTATTAAAA...---CGACGTCGTAAACGTATCCCATAT
VL2_HPV16/5-464 CGT---...TCTGCAAAACGCACAAAACGTGCATCGGCTACCCAACTTTATAAAACATGCAAACAGGCAGGTACATGTCCACCTGACATTATACCTAAGGTTGAAGGCAAAACTATTGCTGAACAAATATTACAATATGGAAGTATGGGTGTATTTTTTGGTGGGTTAGGAATTGGAACAGGGTCGGGTACAGGCGGACGCACTGGGTATATTCCATTGGGA------------ACAAGGCCTCCCACAGCTACAGATACACTTGCTCCTGTAAGACCCCCTTTAACAGTAGAT---------------------------------CCTGTGGGCCCTTCTGATCCTTCTATAGTTTCTTTAGTGGAAGAAACTAGT...............---------.....................------------------TTTATTGATGCTGGTGCACCAACATCTGTACCTTCCATTCCCCCAGATGTATCAGGATTTAGTATTACTACTTCAACTGAT.........ACCACACCTGCTATATTAGATATTAAT------------AATACT------------GTTACTACTGTTACTACACATAATAATCCCACTTTCACTGACCCATCTGTATTGCAGCCTCCAACA---CCTGCAGAAACTGGAGGGCATTTTACACTTTCA------------TCATCCACTATTAGTACACATAAT...........................---------TATGAAGAAATTCCTATGGATACATTTATTGTTAGCACAAAC......CCTAAC---ACAGTAACTAGTAGCACACCCATACCAGGGTCTCGCCCAGTGGCACGCCTAGGA......---TTATATAGTCGCACAACACAACAG---GTTAAAGTTGTAGACCCTGCTTTTGTAACCACTCCCACTAAA------......CTTATTACATATGATAATCCTGCATATGAAGGTATAGATgtgGATAATACATTATATTTTTCTAGTAATGATaatAGTATTAATATAGCTCCAGATCCTGACTTTTTGGATATAGTTGCTTTACATAGGCCAGCATTAACCTCT---AGGCGTACTGGCATTAGGTACAGTAGAATTGGTAATAAACAAACACTACGTACTCGTAGTGGAAAATCTATAGGTGCTAAGGTACATTATTATTATGATTTAAGTACTATTGATCCTGCA---......---......---GAAGAAATAGAATTACAAACTATAACACCTTCTACATATACTACCACT---------TCACATGCAGCCTCA...CCTACTtctATTAATAATGGATTATATGATATTTATGCA---------------------------GATGAC---------------............---TTTATTACAGATACTTCTACA---------------ACCCCGGTACCATCTGTACCCTCTACATCTTTATCA---GGTTATATTCCTGCAAATACAACAATTCCTTTTGGTGGTGCATACAATATTCCTTTAGTATCAGGTCCTGATATACCCATT...---------------AATATAACTGAC...---CAAGCTCCTTCATTAATTCCTATAGTTCCAGGGTCTCCACAATATACAATTATTGCTGATGCAGGT------------GACTTTTATTTACATCCTAGTTATTACATGTTACGA...---AAACGACGTAAACGTTTACCATAT
VL2_HPV31/5-457 CGC---...TCTACAAAACGCACTAAACGTGCGTCTGCTACACAATTATATCAAACATGTAAAGCAGCAGGTACTTGTCCATCAGACGTTATACCTAAAATAGAACATACTACCATTGCAGACCAAATATTAAGGTATGGTAGTATGGGTGTTTTTTTTGGTGGGTTGGGTATTGGGTCCGGCTCTGGTACTGGGGGTCGCACTGGATATGTCCCTCTTAGT------------ACACGTCCTTCTACAGTATCTGAGGCAAGTATACCTATTAGACCACCAGTTAGCATTGAC---------------------------------CCTGTAGGTCCCTTGGACCCCTCTATAGTAAGTCTTGTTGAAGAATCTGGA...............---------.....................------------------ATTGTTGATGTTGGTGCCCCTGCTCCTATACCACACCCTCCTACA---ACATCTGGGTTTGACATTGCTACAACTGCAGAC.........ACAACACCTGCAATTTTAGATGTA------------------------------------ACAAGTGTTAGCACACATGAAAATCCTACTTTTACTGATCCATCTGTATTGCAGCCTCCTACA---CCTGCAGAAACATCAGGTCATTTACTACTTTCA------------TCATCATCTATTAGCACACATAAT...........................---------TATGAGGAAATACCTATGGATACATTTATTGTTTCTACTAAT......AATGAA---AACATAACAAGTAGCACACCCATTCCAGGGGTGCGCCGTCCTGCACGTTTAGGG......---TTATATAGTAAGGCTACACAACAA---GTAAAAGTTATTGATCCAACGTTTCTTAGTGCTCCAAAACAG------......CTAATTACATATGAAAACCCTGCCTATGAAACTGTAAATgctGAAGAATCTTTATACTTTTCCAATACATCG...---CATAATATAGCCCCTGATCCCGACTTTCTAGATATTATAGCATTACATAGGCCTGCCCTTACCTCA---CGTAGGAACACTGTTAGATATAGTAGACTAGGTAATAAACAAACTTTGCGCACTCGTAGTGGTGCTACTATTGGTGCAAGGGTGCATTATTATTATGATATTAGTAGTATTAATCCTGCAGGT......---......---GAAAGTATTGAAATGCAACCTTTAGGG------------------------------GCGTCTGCAACTACT...ACTTCTactTTAAATGATGGCTTATATGACATTTATGCAGACACT------------GATTTTACTGTGGAT---------------............---ACACCTGCCACACATAATGTT---------------TCCCCTTCTACTGCTGTACAGTCCACATCTGCTGTGTCTGCCTATGTACCTACAAATACCACTGTGCCACTAAGTACAGGTTTTGACATTCCCATATTTTCTGGGCCTGATGTACCTATA...---------------GAGCATGCACCT...---ACACAGGTTTTCCCATTTCCTTTGGCCCCTACAACGCCACAAGTGTCTATTTTTGTTGATGGGGGT------------GATTTTTATTTGCACCCTAGTTATTATATGTTAAAA...---CGTCGACGTAAACGTGTATCATAT
VL2_HPV34/5-464 ---CGTgacACACATATAAGACGTAAACGTGCATCAGCCACACAATTATACAAAACATGTAAGCAAAGTGGCACATGTCCCCCTGACATAATTCCAAAGGTTGAGGGCAATACTTTAGCTGACCAAATATTAAAATATGGTAGCATTGGGGTATTTTTTGGGGGTTTGGGTATTGGTAGCGGGTCAGGAACCGGGGGTCGTACAGGATATGTGCCATTACCCACA------ACTACTCCATCTAGACCAGTTGAAATTCCTTTGCAACCTACCAGACCTCCTGTTATTACATCT------------------------------------GTAGGGGCCTCTGATTCTTCTATAGTTTCATTAGTGGAGGAGTCAAGT...............---------.....................------------------TTTATTGAAGCTGGTGTGCCAGGTCCTACCTCCATAGTGCCTTCT---AGTTCTGGATTTAATGTAACAACATCTGTGGAC.........AGTACACCTGCTATTATAGATGTGGCA------------ACTATAAGTGACACTACACAAGTATCTGTTAGTACATTTAACAATCCAACTTTTACTGACCCATCCGTGTTGCAACCTCCTCCA---CCCTTAGAGGCCTCTGGCAGACTTTTATTTTCA------------AATGATACTGTAACTACTCATTCT...........................---------TATGAAAATATACCTCTTGACACATTTGTAGTTACAACAGAT......AACAAT---AGTATTGTTAGTAGTACGCCCATTCCAGGGAGGCACCCTCCTGCACGCTTAGGG......---CTTTATGGACGTGCTATACAACAG---GTTAAGGTTGTAGACCCTGCTTTTGTAACAACGCCTACACGT------......TTGGTAACATATGATAATCCTGCCTTTGAGGGCCTGCAA...GATACCACATTAGAATTTCAGCACAGTGAC...---TTGCATAATGCTCCTGACTCTGATTTTTTAGATATTGTAAAGTTACATAGGCCTGCTTTAACTGCT---AGAAAAACTGGCATACGTGTTAGTAGACTAGGACAACGTGCCACTATGTTTACTAGAAGTGGCAAACGTATAGGTGGTAGGGTACATTTTTATCATGATTTAAGTCCAATACCT---------......---......ACGGAAAATATTGAACTGCAGCCTTTACTGCCTTCTGCATCT------------------GCTACTGTAACAGAT...GCTAATggcATTAATGATGGGCTATATGATGTATTGTTAGATAAT------------AATGTAGATATTACT---------------............---GAAGTGGAAACACCTACTGGT---------------ACAAACACACAAAGTGTTTTTGCAAGTGAGATT------TCCACTACAACTGCAAATACCACTATTCCTTTAAATGCTGGTTTGGATACACATCCT------GGCCCTGATATTGCTTTA...---------------CCTGTACCTACT...---GCAGAAACCATTTTTACCCCAACTGTACCTGTACAGCCTTCTGGTCCTATATATATATATGGGTCC------------GATTTTATATTGCATCCTAGCTTGTATGTCATTCCA...---CGCAAACGTAAACGTTTGTCATAT
VL2_HPV32/5-467 CGA---...AGTCGCAGACGC---AAACGGGCATCTGCTACACAGTTATATCAAACATGTAAGGCCTCTGGGACATGCCCACCCGATGTAATTCCTAAGATTGAAGGTCGCACGTGGGCAGATCAAATATTAAAATGGGGCAGCACTGGTGTGTTTTTTGGGGGCCTTGGCATAGGTACCGGTGCTGGGTCAGGTGGGCGCACAGGGTATGTGCCTATAGGA------------ACACGACCGCCTGTTGTTGCAGAGCCGGGCCCTGCAATACGTCCTCCAGTGGTTGTTGAC---------------------------------ACTATTGGGCCTACTGACCCATCTGTAATTTCCTTATTGGAAGAGTCTGCA...............---------.....................------------------GTTATTGATTCTAGCATACCAGTGCCTACCGACACGTCTCATGGT---------GGGTTTAATATTACGTCCTCTGCAAGTggcccgtccTCTACACCTGCTGTATTGGACATTTCT------------CCTCCCACCAATACTATAAGGGTTGCATCTACTACGTCCCACAATCCAGTATACAGTGATCCTTTTACTTTACGGCCTTCTTTG---CCAGTAGAGGGTAATGGTAGACTCTTAACATCC------------CACCCAACAATAGCCCCTCATTCG...........................---------TATGAGGAAATTCCTATGGACACTTTTGTGGTATCCACAGAT......ACAAGT---AATACTGTTACCAGTACCCCTATTCCTGGACCTCGCCCTACTATGCGCCTTGGT......---TTATATACCAGGGTCACTCAACAA---CGTCCAGTTGCTACTACAACATTTTTAACATCTCCCGAGCGT------......TTGGTAACCTATGACAACCCTGCATATGAGGGTCCTGCT...GAGGGTACGTTGGAATTTGAACATCCCACC...---ATTCATGAGGCTCCTGATTCTGATTTTATGGATATTATTGCATTACACCGTCCTGTGCTATCTGCT---AGGCAGGGCACTGTCCGTGTCAGTCGTATTGGGCAACGGGCTTCCTTGCAAACACGTAGTGGGGCTCGTATTGGGTCTAGGGTACATTTTTTCCATGATATTAGCCCAATCACTAGGCCA---......---......TCAGAGGCTATAGAATTGCAACCTTTAGGCTCCTCCTCCACAGCT---------------GTATCTACTACTGCT...TCATCCgcaATTAATGATGGCCTGTTTGATGTTTATGTTGACCCT------------GACATACCTCCCTCA---------------............---CACGCGTTACCGCCCCTACGG------TCCCCCACACACGTGTCAACTGTTTCTTTAACTAGTCTTGGTAGTGTTCCTGCACAAACTGCAAATACAACTGTCCCTCTTTCCTTACCTACAAATATTAAT------GTAGGCCCTGACCTTTCACCT...---------------CCTGAGTCTCCG...---CCCTTTATTAGTACACGTCCTGTATCACCTTCT------TTTGACTCTGTTATGGTATTAGGATGG------------GATTTTATATTGCATCCCAGTTATATGTGGCGT---...---AAGCGCCGTAAACCTGTACCATAT
VL2_HPV56/5-455 CGT---...---GCCACACGACGCAAACGCGCATCTGCAACACAACTATATAAAACATGTAAGTTGTCTGGTACATGTCCAGAGGATGTTGTTAATAAAATAGAGCAAAAAACATGGGCTGATAAAATATTGCAATGGGGAAGTTTATTTACATATTTTGGAGGCCTTGGCATTGGTACAGGAACTGGGTCTGGGGGTCGTGCAGGCTATGTTCCATTGGGG------------TCTAGGCCTTCC---ACAATAGTTGATGTAACTCCGGCGCGACCACCTATTGTTGTGGAATCC---------------------------------GTAGGGCCTACAGACCCTTCCATTGTTACATTAGTTGAGGAGTCCAGT...............---------.....................------------------GTTATAGAATCTGGTGCAGGGATTCCTAATTTTACTGGGTCTGGG---------GGATTTGAAATTACATCCTCATCAACA.........ACTACACCTGCCGTGTTGGATATTACA------------CCAACCTCTAGTACTGTACATGTCAGTAGTACCCATATAACCAATCCGTTATTTATTGATCCCCCTGTTATTGAGGCCCCACAA---ACAGGCGAGGTGTCTGGCAATATTTTAATTAGC------------ACACCCACATCTGGTATACATAGC...........................---------TATGAAGAAATACCTATGCAAACATTTGCTGTT---CACGGT......TCTGGTACAGAACCTATTAGTAGTACTCCTATTCCAGGCTTTAGGCGTATTGCAGCTCCTAGA......---TTATATAGAAAAGCATTTCAGCAG---GTTAAGGTAACTGACCCTGCATTTCTTGATAGACCTGCAACA------......TTAGTATCTGCTGATAATCCACTTTTTGAAGGTACTGAC...---ACATCTTTAGCTTTTTCT---------...CCGTCGGGTGTGGCTCCTGACCCTGATTTTATGAATATAGTAGCATTACATAGGCCTGCATTTACTACA---CGTAGGGGTGGTGTACGTTTTAGTAGGCTTGGCAGAAAGGCTACTATACAAACACGTAGAGGCACACAAATAGGTGCCCGTGTGCATTATTATTATGATATAAGTCCTATTGCACAGGCT---......---......---------GAGGAAATTGAAATGCAGCCATTATTGTCTGCAAATAATTCA------------------------...------...---TTTGATGGCCTATATGATATTTATGCAAATATA---GATGATGAAGCACCTGGTTTGTCT---------------............------AGCCAGTCAGTTGCTACACCTTCT------------GCACACTTACCTATAAAGCCTTCCACATTGTCTTTTGCTAGTAACACCACTAATGTAACTGCCCCTTTAGGTAATGTGTGGGAAACACCATTTTATTCAGGTCCTGACATAGTGTTG...---------------CCTACAGGCCCC...---AGTACGTGGCCCTTTGTTCCTCAGTCTCCTTATGATGTTACCCATGATGTATATATACAGGGATCC------------TCCTTTGCATTATGGCCTGTGTATTTTTTTAGA---...CGTAGGCGCCGTAAACGTATTCCCTAT
VL2_HPV30/5-454 CGG---...---GCACGCAGACGAAAACGGGCCTCTGCTACTCAGCTGTATCAAACGTGCAAGCAGGCTGGCACATGTCCATCTGATGTTATTAACAAAATTGAACACACAACTTTGGCAGATAAGATATTACAATGGGGTAGTTTGTTTACATTTTTTGGTAATTTAGGTATAGGCACTGGTGCAGGCTCTGGGGGGCGTGCTGGTTATGTTCCGTTAGGT------------ACACGGCCTACA---ACAGTTGTGGACGCATCCCCTGCTAGGCCACCTATTGTTGTTGAATCT---------------------------------GTGGGTCCTACGGACCCTTCCATTGTTACACTGGTTGAGGAGTCTAGT...............---------.....................------------------GTGGTTAATGCTGGAGCATCATTCCCTAATTTTACAGGCACTGCA---------GGCTTTGAGGTTACGTCTTCCTCTACC.........ACAACACCTGCTGTATTAGACATTACA------------CCTACCACTGGCTCTGTCCATGTTAGTAGTACCCATTTTACCAATCCCTCCTTTGTTGAACCCCCAGTTATTGAGGTTCCACAA---ACTGGGGAGGTATCCGGCCATATATTGGTTAGC------------ACTCCCACATCTGGTGTACATAGT...........................---------TATGAAGAAATACCTATGCAAACATTTGCTGTG---CATGGT......ACAGGCACTGAACCTATTAGTAGTACCCCTATTCCTGGGTTACGACGTATAGCTGCCCCTAGA......---TTGTATCAAAGGGCCTTTCAGCAG---GTAAAGGTCACTGACCCCACATTCCTTACCAAACCTGAAACA------......TTAATTACTGTGGATAATCCAGTCTTTGAGGATGCTGAC...---ACAACTTTAACCTTTTCA---------...CCATCGGGTGTGGCACCTGATCCTGACTTTTTAGATATTGTGGCTTTACACAGACCTGCCTTTACAACA---CGTAGGGGTGGTGTGCGTTTTAGTAGGCTTGGTACAAAGGCCACAATGCGCACAAGAAGTGGCAAACAAATAGGTGCTCGTGTACATTATTATTATGATGTGAGTCCTATTGCACACACT---......---......---------GAGGAAATTGAAATGCAGCCATTATTGTCTGCAAATAATTCA------------------------...------...---TTTGATGGCCTATATGATATTTATGCAAACCTT---GATGATGAGGCGCCAGTGTCATCT---------------............------CACCTATCCATTGCTACACCG---------------TCCCGGTTGCCTACCAACACTGTTCCTTTGTCCTTTAGTAGTCAAACTACCAATGTTACTATACCTTTGGGTAAATATTGGGATGTTCCTATTTATTCGGGCCCCGATATAGTATTG...---------------CCTACTGGTCCT...---ACCACATGGCCCTATGCCCCTCAGGCCCCATTTGACACTACACATGATGTGGTTATACATGGATCT------------ACATTTGCTTTATGGCCTGTATACTTTTTAAGG---...CGTAGGCGTCGTAAACATGTTCCCTAT
VL2_HPV26/5-463 CGT---...---GCCCCTCGACGCAAACGAGCATCAGCTACAGACTTATACAAAACATGTAAGGCCGCTGGTACGTGCCCTCCTGATGTTATTCCTAAAATTGAAGGTTCTACCCTTGCTGATAAGATATTACAATGGAGTGGTTTGGGAATATTTTTAGGTGGTCTTGGTATAGGTACAGGAACTGGGTCTGGTGGGCGTACTGGATACATTCCCCTAGGA------------GGGGGTGGTAGACCCTCTGTTGTGGATATCGGCCCTACCCGTCCGCCCATTATTATTGAACCT---------------------------------GTGGGTCCTACAGAACCTTCTATAGTTACTTTGGTGGAGGAATCTAGT...............---------.....................------------------ATTATACAATCTGGAGCCCCTATACCTACATTTAGTGGTGGCAAT---------GGCTTTGAACTTACCACATCCTCTGCA.........ACAACACCTGCTGTGTTGGACATCACC------------CCCTCTGCTGGTACTGTACATGTAACAAGTACCAATATACAAAATCCATTATATATTGAACCCCCT---ATAGATATACCACAG---GCCGGGGAAGCATCAGGTCATATATTTACTACA------------ACGTCCACAGCTGGCACACATAGT...........................---------TATGAAGAAATTCCAATGGAAGTATTTGCTTCTACTAATGGA......ACAGGATTAGAACCTATTAGTAGTACACCTATTCCTGGTATACAACGAGTGTCAGCTCCTCGT......---TTGTATAGTAAGGCCTATCAACAG---GTAAAGGTTACAGATCCCAATTTTATTGGTAATCCCTCCACA------......TTTGTTACCTTTGATAATCCTGCATATGAACCTATAGAT...---GAAACACTTACATATGCTTCC------...AGTAGTACTGTAGCACCTGACCCCGATTTTTTGGACATTATTGCATTGCATCGTCCGGCCCTTACATCT---CGCAAAGGTACTGTACGCTATAGTAGGTTGGGTCAAAAGGCCACTATGAAAACACGTAGTGGAAAACAAATTGGAGCTACAGTACATTATTATCATGATATTAGTCCTATACAGTCTTTTGCT......---......---GAACACGAAGAAATTGAATTGCAGCCTTTACATACATCTACCCATTCA------------------------...------...---TCTGCACCTTTGTTTGATATATATGCAGACCCT---GATACAGTTCCTAGC---------------ATA------............---CATACGCCGCGCATGTCATATTCCCCTACAACATTACCAGTTCCAAGATATGCCTCCAATGTGTTTTCCTCTATTAATACTTCCACTACCAATGTTACTGTGCCTTTATCCACCTCATTTGAACTACCTGTATATAGTGGGTCAGACATTTACACG...---------------CCCACATCTTCC...---CCGACATGGCCATCATTGCCCCCCCCACCCACCACTAACTTACCTGCAATAGTTGTGCATGGGGAT------------AATTATTATTTATGGCCCTATATTTATTTAATC---...CATAAACGCCGTAAACGTATGCCTTAT
VL2_HPV39/5-461 CGT---...---GCTGCCAGGCGTAAGCGTGCATCTGCAACTGACCTATATAGAACCTGTAAACAATCGGGTACCTGTCCACCAGACGTTGTTGATAAAGTTGAGGGTACTACACTTGCTGACAAAATTTTACAGTGGACTAGTTTAGGTATATTTTTGGGTGGGTTAGGCATAGGCACAGGTACTGGTACTGGGGGACGCACAGGATATATACCCCTGGGG------------GGTAGGCCTAAT---ACTGTTGTAGATGTGTCTCCTGCACGTCCACCTGTAGTTATTGAACCT---------------------------------GTTGGTCCTTCTGAGCCATCTATTGTGCAATTGGTGGAGGACTCAAGT...............---------.....................------------------GTTATAACCTCTGGAACACCAGTACCAACATTTACAGGCACCTCT---------GGATTTGAAATTACTTCTTCTTCTACT.........ACTACGCCTGCGGTATTGGATATTACA------------CCCTCCTCTGGGTCTGTACAAATAACCTCTACTAGTTATACTAACCCTGCCTTTACGGATCCTTCCTTAATTGAGGTTCCCCAA---ACAGGTGAAACCTCGGGTAATATATTTGTCAGT------------ACCCCTACATCAGGTACACATGGC...........................---------TATGAGGAAATACCTATGGAAGTGTTTGCCACA---CATGGC......ACAGGTACCGAACCTATTAGCAGCACACCTACACCTGGAATCAGTCGTGTGGCAGGACCACGT......---TTATATAGTAGAGCACATCAGCAG---GTTCGTGTTAGTAATTTTGATTTTGTAACTCACCCTTCATCA------......TTTGTAACATTTGATAATCCTGCTTTTGAGCCTGTTGAT...---ACTACATTAACATATGAA---------...GCTGCTGACATAGCTCCAGATCCGGATTTTCTGGACATTGTTCGTTTACATAGGCCTGCCTTAACCTCG---CGTAAAGGAACAGTAAGGTTTAGTAGGCTTGGCAAAAAGGCTACCATGGTTACCCGGCGTGGCACACAAATTGGAGCGCAAGTACATTATTACCATGACATTAGTAGTATTGCTCCTGCT---......---......---GAAAGCATTGAATTACAGCCCCTAGTTCACGCTGAGCCCTCTGATGCT------------------------...------...---TCAGATGCATTATTTGATATATATGCT---GAT---GTGGACAATAACACATATTTAGAT---------------............---ACTGCATTTAATAATACAAGGGATTCGGGCACTACATATAACACAGGCTCACTACCTTCTGTGGCTTCTTCAGCATCTACTAAATATGCCAATACAACTATTCCTTTTAGTACCTCATGGAATATGCCTGTAAATACTGGTCCTGATATTGCTTTA...---------------CCAAGTACTACT...---CCACAGTTGCCATTGGTGCCTTCTGGACCAATAGACACAACATATGCAATAACCATTCAGGGTTCC------------AATTATTATTTGTTGCCATTATTGTATTTTTTC---...CTAAAAAAACGTAAACGTATTCCCTAT
VL2_HPV18/5-453 CGT---...---GCCGCACGACGCAAACGGGCTTCGGTAACTGACTTATATAAAACATGTAAACAATCTGGTACATGTCCACCTGATGTTGTTCCTAAGGTGGAGGGCACCACGTTAGCAGATAAAATATTGCAATGGTCAAGCCTTGGTATATTTTTGGGTGGACTTGGCATAGGTACTGGCAGTGGTACAGGGGGTCGTACAGGGTACATTCCATTGGGT------------GGGCGTTCCAAT---ACAGTGGTGGATGTTGGTCCTACACGTCCCCCAGTGGTTATTGAACCT---------------------------------GTGGGCCCCACAGACCCATCTATTGTTACATTAATAGAGGACTCCAGT...............---------.....................------------------GTGGTTACATCAGGTGCACCTAGGCCTACGTTTACTGGCACGTCT---------GGGTTTGATATAACATCTGCGGGTACA.........ACTACACCTGCGGTTTTGGATATCACA------------CCTTCGTCTACCTCTGTGTCTATTTCCACAACCAATTTTACCAATCCTGCATTTTCTGATCCGTCCATTATTGAAGTTCCACAA---ACTGGGGAGGTGGCAGGTAATGTATTTGTTGGT------------ACCCCTACATCTGGAACACATGGG...........................---------TATGAGGAAATACCTTTACAAACATTTGCTTCT---TCTGGT......ACGGGGGAGGAACCCATTAGTAGTACCCCATTGCCTACTGTGCGGCGTGTAGCAGGTCCCCGC......---CTTTACAGTAGGGCCTACCAACAA---GTGTCAGTGGCTAACCCTGAGTTTCTTACACGTCCATCCTCT------......TTAATTACATATGACAACCCGGCCTTTGAGCCTGTGGAC...---ACTACATTAACATTTGAT---------...CCTCGTAGTGATGTTCCTGATTCAGATTTTATGGATATTATCCGTCTACATAGGCCTGCTTTAACATCC---AGGCGTGGGACTGTTCGCTTTAGTAGATTAGGTCAACGGGCAACTATGTTTACCCGCAGCGGTACACAAATAGGTGCTAGGGTTCACTTTTATCATGATATAAGTCCTATTGCACCTTCCCCA......---......---GAATATATTGAACTGCAGCCTTTAGTATCTGCCACGGAGGACAAT---------------------------...------...---------GACTTGTTTGATATATATGCAGATGAC---ATGGACCCTGCAGTGCCTGTACCA---------------............---TCGCGTTCTACTACCTCCTTTGCA---------------TTTTTTAAATATTCGCCCACTATATCTTCT------GCCTCTTCCTATAGTAATGTAACGGTCCCTTTAACCTCCTCTTGGGATGTGCCTGTATACACGGGTCCTGATATTACATTA...---------------CCATCTACTACC...---TCTGTATGGCCCATTGTATCACCCACGGCCCCTGCCTCTACACAGTATATTGGTATACATGGTACA------------CATTATTATTTGTGGCCATTATATTATTTTATT---...CCTAAGAAACGTAAACGTGTTCCCTAT
VL2_HPV27/3-455 CGT---...---GCCAAGCGTCGGAAACGCGCCTCCCCCACCGACCTCTATCGTACATGCAAGCAGGCAGGTACCTGCCCCCCAGACATTATTCCAAGGCTAGAACAAAACACCTTGGCAGATAAAATATTAAAGTGGGGCAGCCTAGGGGTCTTCTTTGGCGGTCTTGGTATAGGCACTGGCAGTGGCACGGGGGGACGTACCGGGTATATTCCTGTAGGT------------ACCAGGCCGACCACTGTGGTTGATATTGGTGTGGCACCCAAGCCACCTGTTGTTATTGAACCT---------------------------------GTGGGGGCCTCAGAGCCCTCTATAGTCACTTTGGTAGAGGACTCCAGC...............---------.....................------------------ATCATAAATGCAGGCGCTTCCCATCCCACCTTCACTGGTACAGGT---------GGGTTCGAGGTTACAACTTCCACCGTT.........ACAGACCCCGCTGTCTTGGATATCACC------------CCCTCAGGTACCAGTGTGCAGGTCAGCAGCAGTAGCTTTTTGAACCCACTATACACTGAACCCGCAATTGTGGAGGCTCCTCAA---ACAGGGGAGGTATCTGGCCATGTACTTGTTAGT------------ACAGCCACTTCAGGGTCTCACGGC...........................---------TATGAGGAGATACCAATGCAGACCTTTGCTACGTCAGGTGGA......AGTGGTCAAGAGCCCATAAGTAGCACACCCCTTCCTGGCGTGCGTAGGGTTGCAGGGCCCCGC......---TTGTACAGTAGGGCAAATCAGCAG---GTGCAAGTCAGGGATCCTGCGTTTCTGGAAAGGCCTGCTGAT------......TTGGTAACATTTGACAACCCTGTGTATGACCCA---GAG...---GAGACCATAATATTTCAGCATCCA---...GACTTTCATGAGCCACCGGATCCTGATTTCTTGGACATTGTGGCTTTGCATCGTCCTGCCCTTACGTCC---AGACAAGGCACAGTCCGTTTCAGTAGATTGGGACGCAGGGCCACACTTCGCACCCGTAGTGGTAAACAGATTGGGGCTCGGGTGCACTTCTATCATGATATCAGCCCTGTCGTCCCTGAT---......---......------GAATTGGAGATGGAGCCATTGTTACCCCCAGCTTCTACTGTAGGA------------------------...------...---TCAGATGTTTTATATGATGTTTATGCTGATCCT---GATGTCCTGCAGCCATTGGACGATTACTACCCA------............---GCCCCT---CGCGGC------------------------TCCCTGGCTAATACCACGGTATCTGCCTCCTCTGCATCTACACTGCGAGGGTCCACTACAGCCCCTCTCTCGGGTGGTGTTGATGTGCCTGTGTATACTGGGCCTGATATTGAACCA...---------------CCCGTTGTTCCT...---GGTTTGGGGCCCCTCATTCCTGTGGCTCCATCGTTGCCATCCTCTGTTTACATATTTGGGGGG---------------GATTATTATTTACTGCCAAGTTATATCCTGTGGCCT...---AAACGACGTAAACGTGTCAACTAT
VL2_HPV03/5-464 CGT---...---GCAAGGCGTCGCAAGCGTGCATCTGCCACACAGCTTTATAGAACCTGCAAGGCCGCAGGCACATGTCCCCCTGATGTTATTCCCAAAGTTGAGGGCACCACTTTGGCCGATCGTATTTTGCAATGGGGTAGCTTGGGTGTTTATTTGGGGGGTCTGGGCATTGGTACTGGATCCGGAACTGGGGGGCGCACAGGGTATGCGCCAATTAGT------------ACACGGCCTGGTACTGTTGTTGATGTTAGTGTTCCTGCAAAACCTCCTGTGGTAATTGAGCCT---------------------------------GTGGGGCCATCGGACCCCTCCATTGTTAACCTATTGGAAGACTCCAGT...............---------.....................------------------ATTATTAATTCCGGGTCCACCATACCGACCTTTACTGGTACTGAT---------GGATTCGAAGTTATTTCTTCAGCCACA.........ACTACCCCTGCTGTATTAGATATTACA------------CCTGCCAGTGACAATGTGGTGGTTAGTAGTACCAATTTTAGCAATCCAGCTTTTACAGAACCTTCCCTGTTGGAGGTTCCTCAG---AATGGTGAGGTTTCAGGGCACATACTTATTAGC------------ACCCCCACATCTGGTACACATGGT...........................---------TATGAAGAAATTCCTATGGAAACCTTTGCTTCG---CCAGGT......ACGGGAACTGAACCTATTAGTAGCACCCCTGTACCTGGTGTAAGTAGAATTGCAGGTCCCCGC......---CTATATAGCAAAGCTGTCACACAG---GTTAAGGTAACAGATCCTGCTTTCTTGACCCGTCCTCGCTCG------......TTAATGACATTTGACAATCCTGTGTTTGAGCCAGAAGAT...---GAGACTATAATATTTGAACGTCCGTAC...TCTCCCTCACAGGTGCCTGACTCTGACTTCCTTGACATTTTACGTTTGCACAGGCCTGCTTTAACTTCT---CGTAGGGGTACTGTGCGTTACAGTAGGGTAGGCCAAAAATTAAGCATGCGCACTCGCAGTGGCAAGGGTCTTGGTGCTCGAGTGCATTATTATCAAGATTTAAGCCCCATAGGTCCTACG---......---......---GAGGACATTGAAATGGAACCCTTGATTGCTCCTGCATCTGCCTCAGCC------------------------...------...---TATGACTCTCTGTATGATGTGTATGCAGATGTG---GACGATGCTGACATAGGTTTTACATCTGGAGGT------............---CGTAGTGACACTCTGTCTAGAGGC------------------CGTGCTACAGTGTCCCCCCTGTCCTCCACTCTGTCCACAAAGTATGGCAATGTCACCATTCCCTTTGTGTCTCCTGTGGATGTGCCTTTACAACCTGGGCCTGATATTTTACTG...---------------CCTGCATCA---...---GCTCAGTGGCCGTTTGTTCCCTTGTCTCCTGTTGACACAACTCATTATGTCTACATAGATGGCGGG------------GATTTTTATCTATGGCCTGTCACCTTCTTTTTGCCCcgaCGTCGTCGCCGTAAACGTGTCTCATAT
VL2_HPV63/3-504 AGA---...---GTACGTAAACGA---CGAGCTGCTCCACAAGATATTTATCCTGCTTGTAAGGTTGCAAACAATTGCCCCCCTGATATACAAAATAAAATTGAACAAACAACAGTTGCTGACAAGATTTTACAATATGGGAGTTTGGGAATATTCCTGGGAGGTTTGGGTATTGGTACTGGCAAGGGTGGGGGTGGCCGGTATGGTTATACACCTCTAGGGGACAGTGGT---------GCGGTGCGAGTTGGTGGCAGAAGTACACCTGTAAGACCAACAGTACCTGTGGAGACTGTAGGACCAAGGGATATATTACCTATAGATTCATTGGATCCTTTAGGGCCCTCAGTCATTGAACTAGAAGATATT------...............---------.....................---------CCAGCCACAACAGTGGAAGTAGTGGCTGAAGTGCATCCCATATCT---GATACTCCACAAATACCGGCACCTACTACTGATGAATCTAGT.........---TCA---GCTGTTCTTCATATTCCA---CAAGAAAGTCCTGCTGCACGTACA------ATCACACGTTCCCAATACAATAATCCTTTATTCAGGATCACAGCTAGTGCAGACATAGCATCAGGTGAAGCTTCAGCATCTGATAATATTTTTATAGATGTAGATACGCCGGGTCAAATAGTAGGACAAGAAATAcca........................CTAGTTAATTTTGATATGGGACCTATATCTACTGAAGGT------GAGCTT......GAAACTGAGTTCACA---ACTAGTACACCAAGAACCACACAAGTACAGGAAAGGCCTACACGT......---TTCTATAATAGACGCTATTATGAACAAGTGCCAGTTACTGCACCTGAATTTATCACAAGGCCTGCT------TCC......TTAGTTACTTTTGAGAATCCTGCATTTGAAAGGAGT---...---GTTTCTTTGATTTTTGAACAAGATTTAgaaGATATTTTAAATGCTCCTGATCAGGATTTTAGAGACATTGTTTATTTAAGCAGACCAACATACAGTCGTGCCCCTGATGGCCGCATGCGCCTAAGCCGCCTGGGACGCAGAGCCACTATAAGTACCAGAAGTGGTGTTACTATAGGTGCTCAATCACACTTTTATATGGATATTAGCTCTATCTCCTCAAAT---......---......---GATGGCATTGAGTTACAAACACTGGGTGAAGCTTCTGGCGAGACTGTGGTGCAAAGTTCTCTTGCTGCATCGgatCCTATTgaaGCAGAACATTCATTCATTGAACCAGCACCATCTATAGATAGTTATGATATTGTTTCACTTCAGTCT------------............GAGACTTATTCAGATGAACATTTGTTAGATATGTATGAACCTGTAGGTTCTTCCTTGCAATTACAAATATCAGACGTCAGAGGTCGGCCAACTGTTATTGATATTCCCTTTAGACCCCGC---AGGCCTCCA------TTAGGTCCTATAAATGCTGGT...GTTGATATCTATAGTCCAACTGCTAGT...GTTGGATCACCTACTATAAATCCTACTGATCTTGACATTCCATTAATTATTATACATTTAGATAATTCA------ACAGGGGATTATGATTTACATCCAAGTTTGCGTAAACGT---...---------CGCAAATTAGTTCATATT
VL2_HPV1A/3-507 CGC---...---CTACGTAGAAAA---CGCGCTGCCCCCAAAGATATATACCCCTCATGCAAAATATCAAACACCTGCCCACCTGACATTCAAAATAAAATTGAGCATACAACAATTGCTGATAAAATATTGCAATATGGCAGTCTGGGAGTTTTTTTGGGAGGTTTGGGCATTGGAACAGCCAGAGGCTCTGGAGGAAGAATTGGTTATACTCCCCTCGGTGAGGGTGGT---------GGGGTTAGAGTTGCTACTCGTCCAACTCCAGTAAGGCCTACAATACCTGTGGAAACAGTAGGCCCCAGTGAAATTTTCCCCATAGATGTTGTAGATCCTACAGGCCCTGCTGTTATTCCCCTACAAGATTTAGGTAGA...............---------.....................---GACTTCCCAATACCAACTGTGCAGGTTATTGCAGAAATTCACCCTATTTCT---GACATACCAAACATTGTTGCATCTTCAACAAATGAAGGAGAA.........---TCT---GCCATATTAGATGTGTTA---CGAGGGAATGCAACCATACGCACT------GTTTCAAGAACACAATACAATAACCCCTCTTTCACTGTTGCATCTACATCTAATATAAGTGCTGGAGAAGCATCAACATCAGATATTGTATTTGTTAGCAATGGTTCAGGTGACAGGGTGGTGGGCGAGGATATCccc........................TTGGTAGAATTAAACTTAGGCCTTGAAACAGACACATCTTCTGTTGTACAA......GAAACAGCATTTTCC---AGCAGCACACCAATTGCTGAAAGACCCTCTTTTAGGCCCTCAAGA......---TTCTATAATAGGCGTCTATATGAACAGGTGCAAGTACAAGACCCTAGGTTCGTTGAGCAGCCACAG------TCA......ATGGTCACTTTTGATAATCCAGCATTTGAGCCAGAGCTTgatGAGGTGTCTATTATCTTCCAAAGAGACTTAgatGCTCTTGCTCAGACACCAGTGCCTGAATTTAGAGATGTAGTTTATCTGAGCAAGCCCACATTTTCGCGGGAACCAGGGGGACGGTTAAGGGTTAGCCGCCTTGGCAAAAGTTCAACTATTCGTACACGCCTGGGCACAGCAATTGGCGCCAGAACCCACTTTTTCTATGATTTAAGTTCTATTGCTCCAGAA---......---......---GACTCAATTGAATTATTGCCTTTAGGTGAGCATAGTCAAACAACAGTCATTAGTTCCAACTTAGGT------...------...---GACACAGCATTTATACAAGGTGAGACAGCAGAGGATGACTTAGAAGTTATCTCTTTAGAAACACCA---------............CAATTATATTCAGAAGAAGAGCTTTTAGACACAAACGAAAGTGTGGGCGAAAATTTGCAACTTACTATTACTAACTCAGAGGGTGAGGTTTCTATACTAGATTTAACACAAAGCAGAGTC---AGGCCACCT------TTTGGCACTGAAGATACTAGC...TTGCATGTATATTACCCAAATTCTTCT...AAAGGGACTCCAATAATTAATCCTGAAGAATCATTTACACCTTTGGTTATTATAGCTCTTAACAACTCA------ACAGGGGATTTTGAGTTACATCCTAGTCTTAGAAAGCGT---...---------CGTAAAAGAGCTTATGTA
VL2_HPV49/3-521 CGT---...---GCTCGCAGAACAAAGCGAGATTCTGTAACAAACATTTACAGAACCTGCAAACAGGCAGGAAACTGTCCTCCGGATGTTGTTAATAAAGTGGAACAAACTACAATTGCTGACCAAATATTAAAATTTGGCAGCACTGGTGTGTTTTTTGGTGGTTTGGGAATAGGTACAGGCCGTGGTACCGGTGGCAGTACTGGCTATGTACCTATAGGTGAAGGCCCA---------GCAATACGTGTTGGGGGCACTCCAAGTGTTGTTCGTCCAGGTATACTCCCTGAGGCTATTGGTCCGGCGGATATCATTCCTATTGATACTGTCAATCCAATTGATCCAAATGCATCATCTGTGGTCCCACTCACTGAC...............---ACAGGA.....................CCTGATTTGCTACCTGGGACAATTGAGACTATTGCAGAAGTGAACCCTGCCCCA---GATATTCCTAGAGTTGACACATCTGTTGTCACAACAAGCAGA.........GGCTCCAGTGCTGTATTGGAGGTTGCCTCTGAACCCACACCACCCACTCGCACCAGA---ATTTCCAGAACACAGTACCATAATCCCTCTTTTCAAATATTAACTGAATCTACACCCTCTTTGGGAGAATCTGCATTAACTGATCATGTTGTTGTTACTAGTGGTTCTGGTGGTCAACCAATAGGTGGAGTTACA.....................ccagttGAAATAGAATTACAAGAACTTCCTAGCAGATATACTTTTGAAATAGAGGAA......CCTACACCACCAAGACGCTCTAGTACCCCACTACGCAACATCACACAAGCTGTAGGAAATTTAagaagaTCACTATATAATAGGCGACTTACTCAACAAGTAAATGTCCAGGATCCATTATTCTTACAACAGCCCTCACGTTTAGTT......CGCTTTGCCTTTGATAATCCTGTGTTTGAAGAAGAA---...---GTTACACAAATATTTGAAAGGGACGTAgcaGCTGTAGAAGAACCTCCAGACAGAGACTTTTTAGATATAGCAAAATTAAGCCGCCCTCTTTACTCTGAAACACCACAGGGATATGTCAGGGTAAGCCGCTTAGGTAATAGGGCTTCTATTAGAACACGTAGTGGAGCTACAGTAGGGGCTCAAGTGCATTTTTATACAGATCTTAGCACAATCGATGCAGAG---......---......---GAGTCTATAGAGTTATCACTATTAGGGGAACATTCTGGTGATGCTACTATTGTCCAAGGCCCAGTA------...------...---GAAAGCTCATTTGTAGATTTAAATGTTCAGGAA---CTGCCTCAAGTAATAGAAGTAGACCCAGAACCT------............ACTTTCCACTCTGATGATTTGCTACTGGATGAGCAAAATGAAGATTTTTCTGGCTCCCAGTTAGTTTATGGT---AGTGGCAGGCGTTCTACCACATTTACTGTACCCCGCTTCTCTACTCCCAGATCTGATACCTTTTATGTACAAGATTTGGAAGGT...TATGCTGTGTCATATCCTGAACGAAGG...AATTATCCAGAAATTATTTATCCTCAACCC---GATTTGCCAACTGTAATAATTCATACTGCAGATACC------TCTGGGGACTTCTATTTACATCCAAGCCTTCGCAGGCGA---...------AAACGTAAACGCACTTATTTA
VL2_HPV14/3-519 CGT---...---GCTAGGCGAGTCAAGCGTGACTCTGCTACTAACATTTACAGAACCTGCAAGCAAGCAGGCACGTGTCCTCCTGATGTCATTAATAAAGTTGAAAGCACAACTATTGCTGATAAAATTTTGCAGTATGGTAGTGCTGGTGTTTTTTTTGGGGGTTTGGGCATAAGCACTGGAAAAGGTACAGGAGGTACCACAGGCTATGTGCCTTTGGGAGAGGGCCCA---------GCAGTACGTGTTGGTGGTGCGCCAACAATTATCAGACCTGCTCTGGTCCCAGACACCATTGGTCCATCAGATATTATACCTGTGGACACCTTAGATCCAGTGGAGCCTACGACCTCTTCTATTGTTCCACTCACGGAT...............TCCACAGGA.....................CCAGACCTTTTGCCTGGCGAGGTGGAAACTATTGCAGAGGTGCATCCTGGCCCG---TCTAGGCCTCCTACTGACACTCCTGTCACAACTAGTACAGGA.........GGCTCCAGTGCTATATTAGAAGTAGCACCGGAACCTACTCCGCCCTCACGTGTTAGG---GTGACCCGGACACAATATCATAATCCCTCCTTTCAAGTAATTACCGAATCCACCCCTACCACAGGTGAAAGTTCATTAGCAGACAATATATTGGTTACCTCTGGTTCTGGGGGACAAACTATTGGAGGCGCTACA.....................cctgaaCTTATAGAACTTCAAGAGTTACCATCTAGATATTCATTTGAAATCGAAGAA......CCAACACCCCCTAGAAGAACTAGTACCCCATTACAAAGGATACAGACAGCTATAAGAAGGAGG...ggtGGGCTTACAAATAGGCGCTTAGTCCAACAAGTTTCTGTAGAAAACCCCTTATTTTTAACAAGACCATCTAGACTAGTG......CAATTTCAGTTTGATAATCCAGCATTTGAGGAGGAA---...---GTAACACAAATATTTGAACAAGATATTgaaGATTTTAATGAGCCTCCAGACAGAGATTTTCTAGATGTTCAAAGGCTGGGTAGGCCCCAATATTCAGAAACTCCAGCAGGGTATCTCCGAGTTAGTCGTCTTGGGCAAAGGCGGACTATACGCACTCGTTCTGGAGCACAAATTGGGTCTCAAGTTCATTTTTATAGAGATCTAAGTAGTATAAACACAGAA---......---......---GATCCTATTGAGCTTCAATTATTAGGTCAGCATTCTGGGGATGCTACTATTGTCCAAGGTCCAGTT------...------...---GAAAGCACATTTGTAGACATAAATGTAGATGAA---AATCCACTTTCTGAGGATTTTAGT---------------............---GCACATTCTGATGACTTGCTTTTAGATGAAGCTAATGAAGACTTTAGTGGCTCTCAATTAGTTGTGGGT---AATCGACGCTCAACATCTTCATATACCGTCCCTCGTTTTGAAACAACCAGATCTGGGTCATATTATGCACAGGATACAAAAGGT...TATTATGTAGCTTATCCTGAGGATAGGgacATTAGCATGGATATTATTTATCCTACCCCA---GAGTTGCCTGTTGTCATTATTCACACATATGATACA------AGTGGTGATTTTTACCTGCATCCTAGTCTTCACAAAAGACTC...------AAAAGAAAACGAAAATATTTG
VL2_HPV05/3-518 CGT---...---GCAAAAACGGTCAAGCGAGACTCTGTAACTCATATTTACCAAACCTGCAAACAGGCAGGCACTTGCCCCCCTGATGTTATTAATAAAGTGGAACAAACAACAGTTGCTGACAATATTTTAAAATATGGCAGTGCTGGTGTATTTTTTGGTGGCCTTGGTATTAGTACAGGCCGAGGAACTGGGGGTGCTACAGGGTACGTGCCACTTGGGGAAGGTCCT---------GGTGTCCGTGTCGGAGGAACCCCCACGGTTGTAAGGCCTTCCTTGGTTCCTGAAACAATCGGGCCCGTTGATATTTTGCCCATTGATACAGTTAACCCCGTGGAACCTACAGCATCATCCGTGGTCCCTCTAACTGAG...............TCCACAGGC.....................GCTGATTTACTTCCAGGTGAAGTAGAAACAATTGCTGAAATCCATCCTGTACCT---GAGGGGCCATCAGTGGATACCCCTGTAGTTACCACTAGCACA.........GGTTCCAGTGCTGTTTTAGAGGTTGCCCCAGAGCCTATTCCTCCAACACGGGTCAGG---GTTTCACGCACACAGTATCACAATCCATCTTTTCAAATAATAACTGAGTCTACTCCAGCACAAGGGGAATCGTCTCTTGCAGATCACGTTTTGGTGACATCGGGTTCTGGGGGGCAACGAATAGGGGGTGATATA.....................actgacATAATTGAGTTAGAGGAAATTCCTAGTAGGTATACATTTGAAATTGAAGAA......CCAACTCCTCCACGCCGCAGCAGTACTCCATTGCCACGCAATCAATCTGTAGGCCGTAGGAGGggtttcTCTTTGACTAATAGACGTTTAGTACAGCAGGTACAAGTGGACAATCCATTGTTTCTAACTCAACCATCTAAGTTAGTT......CGTTTTGCATTTGATAATCCTGTTTTTGAGGAAGAA---...---GTGACTAATATATTTGAAAATGATCTGgatGTCTTTGAAGAACCTCCAGACAGAGATTTTCTTGATGTTAGGGAATTGGGACGTCCACAATATTCTACAACACCAGCGGGATATGTTAGAGTAAGCAGGTTGGGGACTCGAGCCACTATTCGCACTCGCTCTGGTGCACAGATAGGGTCGCAAGTCCATTTTTACAGAGATCTTAGCTCTATTAATACTGAA---......---......---GATCCTATTGAATTACAATTATTAGGCCAACATTCAGGTGATGCTACTATAGTCCACGGACCTGTT------...------...---GAAAGCACATTTATAGATATGGATATTTCTGAA---AATCCATTATCTGAAAGCATTGAA---------------............---GCATATTCACATGATTTATTATTAGATGAAACGGTGGAAGATTTCAGTGGGTCTCAGCTGGTTATAGGT---AATCGAAGGAGCACAAACTCTTACACTGTTCCTAGGTTTGAAACTACAAGAAATGGTTCATACTATACACAAGACACAAAGGGA...TATTATGTTGCATATCCAGAGTCACGT...AATAATGCAGAAATCATTTATCCTACACCT---GATATTCCTGTAGTCATTATACACCCTCATGACAGT------ACAGGGGACTTTTATTTACATCCCAGTCTTCACAGGCGC---...------AAACGTAAAAGAAAATATTTG
VL2_HPV15/3-533 CGT---...---GCACGCAGAGTAAAACGTGCATCTGTAACTGACATTTACAGGGGGTGCAAACAAGCAGGTACCTGCCCCCCTGATGTTCTTAATAAAGTGGAACAAACAACTATTGCAGATAAAATTTTGAAATATGGAAGTGCTGCTGTATTTTTTGGTGGGCTGGGAATTGGTACAGGCCGTGGTTCAGGTGGTGCTACAGGTTATGTTCCTTTGGGAGAAGGCCCT---------GGTGTGCGCGTAGGAGGCACCCCTACCATTGTTCGCCCTGGGGTCACACCTGAACTTATTGGTCCAGCGGATGTAATACCAATTGATACAGTCACACCAATTGACCCCGCAGCACCTAGTATTGTCACAATAACTGAC...............AGCAGCGCT.....................GTTGACCTTTTACCT---GAATTGGAGACAATTGCAGAAATACATCCTGTACCAACAGATAATGTAGATATTGATACTCCTGTTGTTACAGGAGGTCGG.........GATTCCAGCGCTATTTTAGAAGTTGCT---GATCCCAGTCCTCCTGTACGAACAAGA---GTGTCTCGCACACAATATCATAACCCATCATTTCAAATTATTACTGAGTCTACACCTTTGTCTGGCGAATCTGCACTAGCAGATCACGTTATTGTTTTTGAAGGTAGTGGAGGTCAAAATATAGGCGGTTCTCGCagtgctgctttggatgcagcacaggaaAGTTTTGAAATGCAAACATGGCCTAGTAGATACAGTTTTGAAATACAAGAA......GGTACACCACCAAGA---TCTAGCACTCCTGTTCAAAGAGCAGTACAATCCCTTTCTAGTCTTagaaggGCTTTATATAACAGACGGCTGACTGAACAAGTAGCTGTAACAGACCCTTTATTCTTGGGACGACCCTCACGCTTGGTG......CAATTTCAATTTGACAATCCAACATTTGAAGAAGAA---...---GTAACACAAACTTTTGAAAGAGATGTTgaaGCATTTGAAGAGCCTCCAGATAGGCAATTTCTAGATGTAGTTCGCCTAGGAAGGCCTACTTATTCTGAAACACCACAAGGTTATGTGCGTGTAAGTAGACTTGGTAGACGGGCCACAATTAGAACCAGAAGTGGTGCACAAGTTGGTGCTCAAGTACATTTCTATAGGGATTTAAGTACAATTGATTCTGAA---......---......---GCA---TTAGAAATGCAATTACTAGGAGAACATTCAGGTGATAGTACCATTGTTCAGGCTCCTATG------...------...---GAAAGTTCATTTATAGATATAAATATTGATGAGCCTGATTCATTACATGTGGGCCTACAGGACAGT---ACTGAAgcagatgacattGATTACAATTCTGCTGATCTTCTTTTAGAAGATAATATAGAAGATTTTAGTGGTTCTCATTTGGTGTTTGGCAATACACGGCGCAGCACTACAACATATACAGTACCTAGATTTGAATCACCTAGAAATACTGGGTTTTACATACAAGATGTGCATGGG...TATAATGTAGCCTATCCGGAGTCCCGT...GATACTACCGAAATAATATTACCACAATCT---GACACGCCAACTGTAGTTATAAATTTTGAAGAGGCA------GGTGGAGACTATTATTTACATCCAAGCTTAAAAACACGT---...------AAACGAAAACGCAAATATTTG
VL2_HPV09/3-533 CGT---...---GCAAAACGTACTAAACGTGCCTCTGTTACAGATATATACAGAGGCTGCAAAGCTGCTGGTACATGTCCACCAGATGTAATTAATAAAGTGGAGCACACAACTATTGCTGATAAAATTTTGCAATATGGAAGTGCTGGTGTGTTTTTCGGGGGCTTGGGAATAAGTACAGGCCGTGGCACTGGTGGTGCCACTGGCTATGTTCCATTAGGGGAAGGGCCA---------GGAGTCCGTGTAGGTGGCACCCCCACTATAGTTCGCCCTGGGGTGATACCTGAAATAATTGGCCCAACTGATCTAATTCCTTTAGACACAGTCAGACCAATTGACCCCACAGCACCCAGTATTGTCACAGGCACTGAC...............---AGCACT.....................GTTGACCTTTTACCTGGTGAAATAGAATCAATTGCTGAGATACACCCAGTACCAGTGGACAATGCTGTAGTAGATACTCCAGTTGTAACAGAAGGTAGAaga......GGCTCGTCTGCCATTTTAGAGGTGGCT---GACCCAAGCCCTCCTATGCGAACCCGT---GTTGCACGAACTCAATACCATAATCCAGCTTTTCAAATTATTTCTGAGTCTACACCTATGTCAGGTGAATCTTCCTTAGCAGATCATATTATAGTTTTTGAAGGATCTGGGGGCCAGCTAGTAGGTGGTCCTAGG...gaatcatacacagcatcttctgaaAACATAGAATTACAAGAATTTCCTAGTAGATATAGTTTTGAAATAGATGAA......GGAACACCTCCTCGG---ACTAGTACACCTGTCCAAAGAGCAGTACAATCATTATCTAGTCTGcgtagaGCTCTATATAACAGACGTCTTACAGAACAAGTGGCTGTGACAGATCCATTATTTTTAAGTAGGCCTTCTCGTTTAGTT......CAATTTCAGTTTGATAATCCAGCATTTGAAGATGAG---...---GTCACACAAATATTTGAAAGAGATCTAagtACTGTTGAGGAGCCTCCAGATAGGCAATTTTTAGATGTACAACGCCTTAGTAGGCCTTTATATACAGAAACACCTCAGGGATATGTTCGGGTTAGTAGACTAGGCCGAAGAGCAACAATCCGCACACGTAGTGGTGCACAGGTGGGCGCACAGGTTCATTTCTACAGGGACTTAAGCACCATTAACACAGAA---......---......---GAACCTATAGAAATGCAATTATTGGGGGAACACTCAGGTGACAGTACCATAGTACAAGGCCCAGTT------...------...---GAAAGTTCAATTGTTGATGTTAATATTGATGAACCTGATGGTTTGGAGGTGGGAAGACAGGAAACCCCT---TCTgttgaagatgtgGATTTTAATTCTGAAGACTTACTGTTAGATGAGGGTGTAGAAGATTTTAGTGGGTCTCAGCTAGTCGTTGGC---ACACGCCGCAGTACAAATACATTAACAGTGCCACGCTTTGAAACTCCAAGGGACACTAGTTTTTATATTCAGGATATACAAGGC...TACACAGTGTCCTATCCCGAGTCTAGA...CAAACCACAGATATAATTTTTCCACATCCT---GACACCCCCACAGTAGTAATCCACATCAATGATACA------TCAGGAGATTATTATTTACACCCAAGTCTCCAAAGGAAA---...------AAACGCAAACGCAAATATTTA
VL2_HPV04/3-520 AGC---...---TTGAGTAGAAGGAAAAGAGATTCAGTTCCAAATCTTTATGCAAAATGTCAACTGTCTGGCAATTGCCTACCTGATGTAAAAAATAAAGTAGAAGCTGATACTCTTGCTGATCGTTTGCTGAGATGGTTGGGAAGTGTAATATACCTAGGAGGCTTGGGTATTGGTACTGGGAGAGGTAGTGGGGGGTCAACTGGGTATAATCCAATTGGAGCTCCA---------------AGTAGAGTCACACCTAGTGGTACTTTAGTAAGGCCTACAGTGCCTGTGGAAAGTTTGGGACCCTCAGAAATAATCCCAATAGATGCAATAGACCCAACAACATCTTCTGTTGTGCCATTAGAGGATCTGACCATCccagatgtcacagtaGATAGTGGAgatacaagaggaataggggagACTACTCTTCAGCCTGCACAAGTAGATATTTCAACATCACATGACCCTATATCAGATGTCACTGGTGCTAGCAGCCACCCTACAATCATATCTGGCGAGgat......AACGCCATTGCAGTGTTAGATGTGTCCCCTATAGAACCTCCCACAAAACGGATAGCATTGGCAACTAGGGGAGCCTCAGCAACTCCACATGTAAGTGTCATATCTGGCACAACCGAATTCGGT------CAGTCATCTGATCTGAATGTATTTGTGAATGCCACATTTTCAGGCGATTCCATTGGTTATACAGAA...........................------GAAATTCCATTAGAACCGTTGAACCCCTTTCAAGAATTCGAAATA......GAAAGCCCTCCAAAA---ACTAGTACACCACGTGACGTTTTAAATCGTGCAATAGGAAGAGCAcgg...GATTTATATAATAGAAGGGTTCAGCAA---ATACCTACTAGGAACCCAGCTTTACTGACACAGCCTTCCCGCGCAATA......GTATTTGGATTTGAAAATCCCGCCTTTGATGCTGAC---...---ATCACTCAAACATTTGAGCGGGATTTAgaaCAGGTTGCAGCAGCTCCAGATGCTGACTTTGCAGACATAGTCACTATAGGGCGTCCAAGGTTTTCAGAGACAGATGCTGGTCAAATTAGAGTTAGCAGGCTTGGACGCCGAGGCACAATAAAAACTAGAAGTGGTGTGCAAATTGGGCAGGCGGTTCATTTTTATTACGACCTAAGTACAATAGATACTGCT---......---......---GATGCTATTGAATTATCTACTTTAGGTCAACATTCAGGAGAACAAAGCATTGTTGATGCTATGATA------...------...---GAAAGCAGCTTAATAGATCCTTTTGAAATGCCC---GATCCTACTTTTACAGAAGAACAA---------------............------------------CAGCTTTTAGATCCACTTACAGAAGATTTTAGTCAGTCACACTTGGTGCTTACTAGTAGCAGACGTGGG---ACATCATTTACTATACCTACAATACCACCTGGATTAGGTCTTAGAATTTATGTAGATGATGTAGGTTCTgatTTATTTGTTTCCTATCCAGAATCTAGA...GTAATACCTGCTGGAGGTTTACCAACTGAGCCATTTGTTCCTCTAGAACCAGCTTTGTTATCTGATATA---TTTAGTACGGATTTTGTATATCGTCCTAGTTTATATCGCAAG---...------AAACGGAAACGATTAGAAATG