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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00505 phylogeny
for restricted amino acid alignment


 
(((((((ABF2_YEAST/43-111,(SSRP_HUMAN/547-615,(HMG1A_CHITE/5-71,SSRP_DROME/555-621))),(((HMGH_IRV6/54-122,NHP6A_YEAST/21-89),NHP1_BABBO/23-93),HMGL_TRYBR/118-186)),(((((FPR1_PODAN/169-237,MTMC_SCHPO/103-171),(MATD_NEUCR/147-215,SMR2_PODAN/161-229)),MAT2_COCHE/131-199),LEF1_MOUSE/297-365),((SOX4_HUMAN/59-127,SOX9_CHICK/106-174),(SOX2_CHICK/39-107,SRY_GORGO/60-128)))),((HMG1_RAT/94-162,(HMGL_SOYBN/44-113,HMGL_WHEAT/42-111)),HMGH_STRPU/100-168)),HMGB_TETTH/18-86),UBF1_HUMAN/112-180),TFAM_MOUSE/49-117,TFAM_HUMAN/50-118);
(((((((ABF2_YEAST/43-111:0.97945,(SSRP_HUMAN/547-615:0.32962,(HMG1A_CHITE/5-71:0.16712,SSRP_DROME/555-621:0.38107):0.17993):0.08035):0.25283,(((HMGH_IRV6/54-122:0.92988,NHP6A_YEAST/21-89:0.18640):0.24883,NHP1_BABBO/23-93:0.42124):0.11937,HMGL_TRYBR/118-186:0.73250):0.10725):0.04371,(((((FPR1_PODAN/169-237:0.44267,MTMC_SCHPO/103-171:0.48249):0.09644,(MATD_NEUCR/147-215:0.74480,SMR2_PODAN/161-229:0.35258):0.46740):0.19897,MAT2_COCHE/131-199:0.81509):0.21090,LEF1_MOUSE/297-365:0.80678):0.15258,((SOX4_HUMAN/59-127:0.26747,SOX9_CHICK/106-174:0.22275):0.11560,(SOX2_CHICK/39-107:0.03481,SRY_GORGO/60-128:0.35237):0.13750):0.46292):0.41687):0.10626,((HMG1_RAT/94-162:0.24999,(HMGL_SOYBN/44-113:0.28917,HMGL_WHEAT/42-111:0.17230):0.52785):0.16053,HMGH_STRPU/100-168:0.50165):0.04211):0.35186,HMGB_TETTH/18-86:0.74296):0.22742,UBF1_HUMAN/112-180:0.77038):0.57396,TFAM_MOUSE/49-117:0.11753,TFAM_HUMAN/50-118:0.36929);