EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00505 alignment
(26 sequences with 213 bp)


UBF1_HUMAN/112-180 CCAAAGAAGCCCCTGACCCCTTATTTCCGCTTCTTCATGGAGAAGCGGGCCAAGTATGCGAAACTCCACCCT......GAGATGAGCAACCTGGACCTAACCAAGATTCTGTCCAAGAAATACAAGGAGCTTCCGGAGAAGAAGAAGATGAAATATATTCAGGACTTCCAGAGAGAGAAACAGGAGTTCGAGCGAAACCTGGCCCGATTCAGG
TFAM_HUMAN/50-118 CCAAAGAAACCTGTAAGTTCTTACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCA......GATGCAAAAACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAAAAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGATTTAAA
TFAM_MOUSE/49-117 CCAAAGAAACCTATGAGTTCATACCTTCGATTTTCCACAGAACAGCTACCCAAATTTAAAGCTAAACACCCA......GATGCAAAACTTTCAGAATTGGTTAGGAAAATTGCAGCCCTGTGGAGGGAGCTACCAGAAGCAGAAAAAAAGGTTTATGAAGCTGATTTTAAAGCTGAGTGGAAAGCATACAAAGAAGCTGTGAGCAAGTATAAA
SSRP_HUMAN/547-615 CCCAAGAGGCCCATGTCTGCATACATGCTGTGGCTCAATGCCAGCCGAGAGAAGATCAAGTCAGACCATCCT......GGCATCAGCATCACGGATCTTTCCAAGAAGGCAGGCGAGATCTGGAAGGGAATGTCCAAAGAGAAGAAAGAGGAGTGGGATCGCAAGGCTGAGGATGCCAGGAGGGACTATGAAAAAGCCATGAAAGAATATGAA
HMG1A_CHITE/5-71 CCAAAGCGTCCTCTTTCCGCATACATGTTATGGCTTAACTCAGCTAGAGAGTCGATCAAGAAAGAAAATCCA......GACTTCAAAGTAACGGAAATCGCAAAGAAGGGTGGCGAATTATGGCGTGGAATGAAAGAT------AAGAGCGAATGGGAGGCTAAAGCCGCCAAAATGAAGGAAGAATATGAGAAGGCAATGAAAGAATTTGAA
SSRP_DROME/555-621 CCCAAGCGCGCCACCACCGCTTTCATGCTCTGGCTGAACGACACGCGCGAGAGCATCAAGAGGGAAAATCCG......GGCATAAAGGTTACCGAGATCGCCAAGAAGGGCGGCGAGATGTGGAAGGAGCTGAAGGAC------AAGTCCAAGTGGGAGGATGCGGCGGCCAAGGACAAGCAGCGCTACCACGACGAGATGCGCAACTACAAG
ABF2_YEAST/43-111 CCTAAAAGGCCCACATCTGCTTATTTCTTATATTTGCAAGACCACAGAAGTCAATTCGTTAAGGAAAATCCA......ACCTTACGTCCTGCTGAAATCAGCAAGATTGCCGGTGAAAAGTGGCAAAATTTAGAGGCTGATATAAAGGAAAAATACATTTCTGAAAGAAAAAAGTTGTATTCTGAATACCAAAAGGCGAAGAAGGAGTTTGAC
HMGL_WHEAT/42-111 CCCAAGAGGGCGCCATCCGCCTTCTTCGTCTTCATGGGCGAGTTCCGCGAGGAGTTCAAGCAGAAGAACCCC...aagAACAAGTCCGTCGCCGCCGTCGGCAAAGCGGCCGGTGAGAGGTGGAAGAGCTTGAGCGAATCGGAAAAGGCCCCCTATGTGGCCAAGGCCAACAAGCTCAAGGGCGAGTACAACAAGGCCATTGCTGCCTACAAC
HMGL_SOYBN/44-113 CCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCT...gaaAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAAC
HMGH_STRPU/100-168 CCCAAGAGGAATCTGTCAGCATTCTTCATCTTCAGTGGAGAGAACAGAGCAGCCATAAAGAGTGTTCATCCC......AACTGGTCTGTGGGTGATATCGCCAAAGAACTGGCCGTCAGGTGGAGAGCTATGACTGCTGGGGAAAAGATTCCGTTTGACAAAGGTGCTGCTAAGGACAAGGAGAGATACATCAAGGCCATGGCCGAGTACAAG
HMG1_RAT/94-162 CCCAAGAGGCCTCCTTCGGCCTTCTTCTTGTTCTGTTCTGAGTACCGCCCAAAAATCAAAGGCGAGCATCCT......GGCTTATCCATTGGTGATGTTGCGAAGAAACTAGGAGAGATGTGGAACAACACTGCTGCGGATGACAAGCAGCCCTATGAAAAGAAGGCCGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTGCCTACAGA
NHP6A_YEAST/21-89 CCTAAGAGGGCTTTGTCCGCCTACATGTTTTTCGCTAACGAAAACAGAGATATTGTTCGTTCTGAAAATCCA......GATATCACATTTGGACAAGTCGGCAAGAAGTTGGGTGAGAAGTGGAAGGCTCTAACGCCAGAGGAAAAGCAGCCTTACGAGGCCAAGGCCCAGGCCGATAAGAAGAGATATGAATCCGAAAAGGAGTTATATAAC
NHP1_BABBO/23-93 CCTAAGCGTGCTTTATCTTCTTACATGTTTTTTGCTAAGGAGAAGCGTGTAGAGATAATTGCTGAGAACCCTgagatcGCTAAGGACGTTGCTGCTATCGGTAAGATGATCGGTGCTGCTTGGAATGCTCTTTCTGATGAGGAGAAGAAGCCCTATGAGCGCATGTCTGATGAAGATCGTGTTAGGTACGAGCGTGAGAAGGCTGAGTACGCC
HMGH_IRV6/54-122 CCTAAAAGAAATAAATCAAGTTATCTTTTTTTCTGTCAAGAAATTAGACCCAGTATAGTTGCAGAAATGCCA......GATATTAAACCAAATCAAGTTATGGTACATTTAGGTAAAAAATGGTCTGAATTGCCATTAGAAGATAGAAAAAAATATGATGTAATGGCTGTAGAAGATCGTAAACGTTATTTAGCATCTAAAGAGGCTAACAAA
HMGB_TETTH/18-86 CCCAAGAGACCCCAAACCGGTTTCTTCATCTACAAGAGTGAAGTCTTTGCCAAGAGAAGAACTGAGTGCCCC......ACCTTGAAGGTCCCTGAAATCGTCTCTAAAATTAGTGAAGAATACAAGGCCTTACCTGAAAAGGAGAAGTAAAAATACGAAGAAGCCTACAGAAAGGAAAAGGCCACCTACGATAAGTAAAACGACCAATGGAAA
HMGL_TRYBR/118-186 CCTAAGCCGGCTGTCAGTTCTTATTTACTTTTCGTAGCTGATCAGCGCGAGGAGCTGAAGGCGAAAAACCCC......GGGATGCAGAATACTGCGATTCTTCAGACGTTGGGTAAAATGTGGAGTGATGCGTCCGATGACGTGAAAGAGCATTACAGAAAGAAGGCAGAGGAGGACAAGGCCCGATTCCGGCGTGAAGTAGACGAGTACAAG
SRY_GORGO/60-128 GTGAAGCGACCCATGAACGCATTCATCGTGTGGTCTCGCGATCAGAGGCGCAAGATGGCTCTAGAGAATCCC......AGAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACTGAAGCCGAAAAATGGCCATTCTTCCAGGAGGCACAGAAATTACAGGCCATGCACAGAGAGAAATACCCGAATTATAAG
SOX2_CHICK/39-107 GTCAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGCGGGCAGCGGCGGAAAATGGCCCAGGAGAACCCG......AAGATGCACAACTCGGAGATCAGCAAACGGCTCGGGGCCGAGTGGAAACTTTTATCCGAGGCGGAGAAGAGACCCTTCATTGACGAAGCCAAACGGCTCCGAGCTCTGCACATGAAGGAGCACCCGGATTATAAA
SOX9_CHICK/106-174 GTGAAGCGCCCCATGAACGCCTTCATGGTGTGGGCCCAGGCGGCTCGAAGGAAGCTGGCTGACCAGTACCCG......CATCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTGTGGAGGCTGCTGAATGAGAGCGAGAAGCGTCCCTTCGTGGAGGAGGCCGAGCGGCTGCGGGTGCAGCACAAGAAGGACCACCCCGACTACAAG
SOX4_HUMAN/59-127 ATCAAGCGACCCATGAACGCCTTCATGGTGTGGTCGCAGATCGAGCGGCGCAAGATCATGGAGCAGTCGCCC......GACATGCACAACGCCGAGATCTCCAAGCGGCTGGGCAAACGCTGGAAGCTGCTCAAAGACAGCGACAAGATCCCTTTCATTCGAGAGGCGGAGCGGCTGCGCCTCAAGCACATGGCTGACTACCCCGACTACAAG
MAT2_COCHE/131-199 GCTCCCCGCCCGATGAACTGTTGGATTATTTTCCGAGATGCAATGCACAAGCATCTAAAGGCCGAATTCCCA......CACCTCACTATTCAAGAGATCTCTACGCGTTGCTCTCACATTTGGCACAACCTCTCTCCTGAAGCCAAAAAGCCCTGGCAGGACGCTGCCCAATCTGCAAAAGAAGAACACCTCCGCCAGCACCCCAATTACAAG
LEF1_MOUSE/297-365 ATTAAGAAGCCTCTGAATGCTTTCATGTTATATATGAAAGAAATGAGAGCGAATGTCGTAGCTGAGTGCACG......CTAAAGGAGAGTGCAGCTATCAACCAGATCCTGGGCAGAAGATGGCACGCCCTCTCCCGGGAAGAGCAGGCCAAATACTATGAACTAGCACGGAAAGAGAGACAGCTACACATGCAGCTTTATCCAGGCTGGTCA
SMR2_PODAN/161-229 ATTCGTCGCCCCCGCAACCAGTTCATCATCTACCGCCAGTGGATGTCTGCTCGGCTCCACGAGGACAACCCC......GGCTTGACAGCTGGTGCTATTTCGTCCATCGTCGCTAAGGCTTGGAAGGGGGAGACACCCCAGGTCAAAGCTCACTTCAAGGCTCTCGCGGTGGAGGAAGACCGCAAGCACAAACTGGCGTATCCTGGGTACCGG
MATD_NEUCR/147-215 ACTAGCCGCCCGCGCAACCAATTCGTTCTCTACTACCAATGGCTGTTGGATACTCTGTTCTCCGAAGATCCG......AGTCTTTCAGCTCGCAATATTTCTCAAATTGTTGCGGGCTTGTGGAACAGCGAGCACCCCGCGGCAAAAGCTCGCTTCAGGGAACTGGCGGAAATGGAGGTTCATCGTCATCGAGCTGAGAATCCTCACCTTTAC
MTMC_SCHPO/103-171 ACTCCGAGACCCCCTAATGCTTTTATATTATACAGGAAGGAAAAACATGCTACATTATTAAAGTCTAACCCT......TCCATCAATAATTCACAAGTTTCCAAGCTGGTTGGAGAGATGTGGAGAAACGAATCAAAGGAAGTACGTATGCGATATTTTAAGATGTCTGAGTTTTATAAAGCACAACATCAGAAAATGTACCCTGGTTATAAG
FPR1_PODAN/169-237 ATTCCCCGCCCCCCTAACGCCTACATTCTTTACCGCAAGGATCAGCAGGCTGCGCTTAAGGCGGCTAACCCT......GGCATCCCCAACAATGACATTTCCGTCATGACTGGTGGCATGTGGAAGAAAGAGTCCCCCGAAGTTCGCGCCGAGTACCAGAGACGTGCGAGTGAGATCAAGGCGAAACTGATGTCGGCTCACCCTCATTATCGC