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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00505 phylogeny
for nucleotide alignment


 
((((((((((HMG1_RAT/94-162,(HMGL_SOYBN/44-113,HMGL_WHEAT/42-111)),HMGH_STRPU/100-168),(HMGB_TETTH/18-86,((TFAM_MOUSE/49-117,TFAM_HUMAN/50-118),UBF1_HUMAN/112-180))),(SSRP_DROME/555-621,(HMG1A_CHITE/5-71,SSRP_HUMAN/547-615))),(((HMGH_IRV6/54-122,NHP6A_YEAST/21-89),ABF2_YEAST/43-111),(HMGL_TRYBR/118-186,NHP1_BABBO/23-93))),(LEF1_MOUSE/297-365,((SOX4_HUMAN/59-127,SOX9_CHICK/106-174),(SOX2_CHICK/39-107,SRY_GORGO/60-128)))),MAT2_COCHE/131-199),MTMC_SCHPO/103-171),FPR1_PODAN/169-237),MATD_NEUCR/147-215,SMR2_PODAN/161-229);
((((((((((HMG1_RAT/94-162:0.24928,(HMGL_SOYBN/44-113:0.27633,HMGL_WHEAT/42-111:0.17244):0.18781):0.07902,HMGH_STRPU/100-168:0.34759):0.07108,(HMGB_TETTH/18-86:0.48913,((TFAM_MOUSE/49-117:0.16435,TFAM_HUMAN/50-118:0.14226):0.43615,UBF1_HUMAN/112-180:0.38698):0.13776):0.10212):0.03969,(SSRP_DROME/555-621:0.26586,(HMG1A_CHITE/5-71:0.27167,SSRP_HUMAN/547-615:0.25146):0.12391):0.15411):0.04244,(((HMGH_IRV6/54-122:0.70377,NHP6A_YEAST/21-89:0.15646):0.07421,ABF2_YEAST/43-111:0.68552):0.15298,(HMGL_TRYBR/118-186:0.44688,NHP1_BABBO/23-93:0.25274):0.06227):0.09708):0.13702,(LEF1_MOUSE/297-365:0.56754,((SOX4_HUMAN/59-127:0.22435,SOX9_CHICK/106-174:0.11785):0.03406,(SOX2_CHICK/39-107:0.13353,SRY_GORGO/60-128:0.27410):0.12740):0.34797):0.00841):0.15825,MAT2_COCHE/131-199:0.55478):0.15200,MTMC_SCHPO/103-171:0.46295):0.10839,FPR1_PODAN/169-237:0.28476):0.30880,MATD_NEUCR/147-215:0.46543,SMR2_PODAN/161-229:0.22183);