EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00416 alignment
(13 sequences with 396 bp)


RT13_PROWI/3-109 TATATACAAAATACACACTTAAATGATAAAAAACAA------ATTTATCAAGCATGTGCACAAATTTACGGCTTAGGACATCACCATTGCTTACAAATTTGTGATGTATTAGGTGTTAGCCCAGAAACTCGATTAGGTATGTTATCTACAGGCCAACATACTTTACTTGCACAAATTATAACTCAAAAT------------------------------------------------------------------TATGATACAGGTAGTGATGTTAGACGTTTTACAAGACAAAATATACAACGC...TTAGTAAATATACATAGTTATAGAGGGTATAGACATATTCAAGGCTTACCTGTACGAGGACAAAGGTCACATGGTAATGCGCGTACC
RT13_MARPO/3-109 TATATTTTAGGAACTAATTTAAATTCCAATAAACAA------GTAAAAATTGCCTTAACTCGAATCTTTGGAATTGGCCCTAAAAAGGCAATTCAAGTTTGTGATCAATTAGGCCTCAGCGATACCATTAAGGTTAATAAGTTAACTAAGTATCAATTTGACCAAATTCTAAAAATAATAAGTCAAAAT------------------------------------------------------------------TATTTAGTTGATTCAGAATTGAAGAGAGTCATTCAGAGAGACATCAAACGA...TTAATTAGTATTGGTTGTTATCGTGGGTTTCGCCATAATGCAGGATTGCCCTTACGCGGCCAACGAACTCATACTAATGCTAAGACT
RS13_ECOLI/2-107 CGTATAGCAGGCATTAACATTCCTGATCATAAGCAT------GCCGTAATCGCATTAACTTCGATTTATGGCGTCGGCAAGACCCGTTCTAAAGCCATCCTGGCTGCAGCGGGTATCGCTGAAGATGTTAAGATCAGTGAGCTGTCTGAAGGACAAATCGACACGCTGCGTGACGAAGTTGCCAAA---------------------------------------------------------------------TTTGTCGTTGAAGGTGATCTGCGCCGTGAAATCAGCATGAGCATCAAGCGC...CTGATGGATCTTGGTTGCTATCGCGGTTTGCGTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACC
RS13_MYCBO/3-109 CGACTCGTCGGCGTCGACCTGCCGCGCGATAAGCGG------ATGGAGGTCGCCCTGACCTACATCTTTGGCATCGGCCGTACCCGCTCGAACGAAATCCTGGCGGCCACCGGCATTGACCGGGATCTGCGCACCAGAGATCTCACCGAAGAACAGCTGATCCACCTGCGCGACTACATCGAAGCGAAC------------------------------------------------------------------CTGAAGGTGGAGGGTGACCTGCGCCGCGAGGTACAGGCCGACATCCGTCGC...AAGATCGAGATTGGCTGCTATCAGGGGTTGCGGCACCGCCGCGGTATGCCGGTACGCGGCCAGCGGACAAAAACCAACGCGCGGACC
RR13_ARATH/49-153 CGTGTTGGTGGAGTGGAGATTCCGGCTAATAAGAGA------ATTGAGTACTCTCTTCAGTACATTCATGGGATTGGTCGAACTAGGGCTCGTCAGATTCTTGTTGATCTTCAGATGGAGAAC---AAGATTACTAAAGACATGGCTGAGGAAGAACTCATCATTCTTCGTGATGAAGTCTCCAAG---------------------------------------------------------------------TACATGATTGAGGGTGATCTGAGGAGGTTCAATGCTCTTGCAATCAAGAGG...TTGAAGGAGATCCAGTGTTACCGTGGGGTAAGGCACATCCAAGGGCTGCCATGTCGGGGACAGAGAACCAAGAACAACTGCAGGACT
RS13_MYCSP/3-106 AGAGTTTTAAATATAGAAATTCCAAATAATAAAAAA------GCTCGTATTTCTCTAACTTATATTTTTGGTATTGGCCCAACAATTGCTAAACAAATTTTGGCTGATGCTAATGTAGATGGGGAAAAAAGAGTTAAAGAATTAACAGAAGAAGAATTAACACGTATCAGAGATGAAGCTAAAAAA---------------------------------------------------------------------TATACTACCGAAGGTGATTTAAAAAGAGAAATTAACTTAAACATTAAGAGA...TTAATGGAAATTAAATCATACCGTGTTATTAGACATAGAAAAGATACCTGTAAGAGG------TCAACAAAGAAAAATGCAAGAACA
RS18_YEAST/16-144 CGTTTGTTGAACACTAACGTTGACGGTAACATTAAG------ATCGTTTACGCTTTGACCACTATCAAGGGTGTTGGTCGTCGTTACTCCAACTTGGTCTGTAAGAAGGCTGATGTTGATTTACACAAGAGAGCTGGTGAATTGACCCAAGAAGAATTGGAAAGAATTGTTCAAATTATGCAAAACCCAACTCACTACAAAATCCCAGCTTGGTTCTTGAACCGTCAAAATGACATCACTGATGGTAAGGACTACCACACTTTGGCTAACAACGTCGAATCCAAATTGAGAGATGACTTGGAAAGA...TTAAAGAAAATCAGAGCTCATCGTGGTATCAGACACTTCTGGGGTTTGCGTGTTAGAGGTCAACACACCAAGACCACTGGTAGAAGA
RS18_RAT/14-142 CGAGTACTCAACACCAACATCGATGGGCGGCGGAAA------ATAGCCTTCGCTATCACTGCCATTAAGGGTGTGGGGCGGAGATACGCTCATGTGGTGTTGAGGAAAGCAGACATTGACCTCACCAAGAGGGCTGGGGAGCTCACGGAGGACGAGGTGGAGCGTGTGATCACCATCATGCAGAACCCACGACAATACAAGATCCCTGACTGGTTCTTGAACAGACAGAAGGACGTGAAGGATGGGAAGTATAGCCAGGTTCTGGCCAACGGTCTAGACAACAAGCTGCGTGAGGACCTGGAGCGG...CTGAAGAAAATCCGAGCCCATAGAGGACTGCGCCACTTTTGGGGCCTTCGTGTCCGGGGTCAGCACACCAAGACCACTGGCCGCAGG
RS18_ARATH/14-142 CGTGTGCTCAATACTAATGTCGATGGGAAGCAAAAA------ATTATGTTTGCTTTGACCTCAATCAAGGGTATTGGAAGGCGATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGATCCCAGACTGGTTTCTTAACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGT...CTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCACACCAAAACCACCGGACGCCGT
RS18_DROME/14-142 CGTATCATGAATACGAACATCGACGGCAAGCGCAAG------GTTGGCATCGCCATGACCGCCATCAAGGGAGTGGGTCGCCGCTACTCCAACATTGTGCTGAAGAAGGCCGATGTCGATCTTACCAAGCGCGCCGGTGAGTGCACCGAGGAGGAGGTCGACAAGGTGGTGACCATCATCTCGAACCCTCTGCAGTACAAGGTGCCCAACTGGTTCCTCAACAGGCAGAAGGACATCATCGATGGCAAGTACTGGCAGCTGACCTCCTCCAACTTGGACTCGAAGCTGCGTGACGATCTGGAGCGT...CTGAAGAAGATCCGCTCCCACCGTGGGCTGCGTCACTACTGGGGCCTCCGTGTGCGTGGTCAGCACACCAAGACCACCGGTCGTCGT
RS13_HALMA/25-152 CGTATCGGACAGACAGACCTCGACGGGACGAAATCC------GTCGAGCGAGCACTGACAGAACTGAACGGTATCGGCCACCGGGCCGCCCGAATTATCGCCCAGAAGGCGGACGTCGACCGGCGCGCTGTCTTCGGCAAGCTCGACGACGACGTCATCGAGCGCGTCGTCGAGCGCGTCGAGAAC---TTCGCCGACGATGTGCCTGAGTGGATGACCAACCACCAGAAGGACTACTTCACTGGTGAGACCACCCACGAGACCGGCAACGACCTCCAGCTTACCCGCCGGCAGGACATCAACCGC...ATGAAGATGATCGATTCCTACCGCGGTGTCCGCCACAAGCGCGGCCAGAAGGTCCGTGGACAGCGTACCAAGTCCACCGGCCGGACG
RS13_SULAC/11-140 AGGCTCTTTGGTCAAGACGTAGATGGAACTATGAAG------CTTCCTTATGCCTTAGCCATGATTAAGGGTATAGGGTATAATACTGCTATGATAATTATTCGTAAATTGAATCTTGATAAGGATAAACGATTAGGTGAAATATCAGACGAGGACATAAAGAAGATTGAGAATTTGTTAAACAACAAAATTATTCCGGAAAGCCCTAACTGGATCTATAACAGACAGAAGGATTACGAGTCAGGAGCCGATATGCATTTGGTGACCTCTGATTTGATCTTTTTACAGTTAGAAATGATATTGAGAgggAGAGGGAGAAGTAGGAGCTGGAGAGGTGTGAGACATAGTTTAGGTCTCAAGGTCAGAGGTCAGAGAACTAGAACTACTGGAAGAACT
RT13_ACACA/5-110 CAAAATTTTAATACATTTGTATCAGATAACAAAAATAAAAACATTTTTAGCGCATTGAAAGATATTCACGGTGTAAATTTAAAAAAAATCAATAAAATGGGTTTGGTAATGGGTCTTGACAAGTTTGAGAAAGTTAGCAGTATGAATTTTGAACTTTTTTCTTTAATAAAAAAACAGGCTATTTTT---------------------------------------------------------------------------TTTTATAACTTAGAAGAAAATAAAATATTTAATAACGTTAACAAA...AAGAAAAAAATAAAAAATTATACAGGAATGCGTCATATATTAAAACTTCCGGTCAGGGGCCAAAGAACCCACACCAATGCTAAAACG