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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00317 phylogeny
for amino acid alignment


 
(((((((((((((((((RIR1_NEUCR/141-213,RIR3_YEAST/141-213),RIR1_SCHPO/141-213),(RIR1_TRYBB/146-223,O41111_CHVP1/155-227)),((((RIR1_CAEEL/147-219,RIR1_VACCC/141-213),(RIR1_PLAF4/139-211,RIR1_CRYPV/139-211)),(O41269_NPVSL/140-212,RIR1_DROME/152-224)),RIR1_ARATH/141-213)),(O12935_9NUCL/138-210,Q65357_NPVMB/132-204)),(RIR1_ASFB7/111-188,Q9QAL9_WSSV/157-236)),Q9L3F5_STRCO/143-221),((Q9I4I1_PSEAE/293-368,RIR1_CHLPN/375-451),Q9HMU3_HALN1/138-216)),((Q9RRW1_DEIRA/78-151,Q9K940_BACHD/108-182),(((Q99VP2_STAAM/108-182,((RIR1_BACSU/90-164,O64173_BPSPC/89-163),Q9RZL7_DEIRA/90-163)),(((Q99Z63_STRPY/92-166,Q97QM4_STRPN/92-166),Q9CGW7_LACLA/92-166),((((RIR1_MYCLE/105-179,RIR3_ECOLI/97-171),O69273_CORAM/103-177),((Q9XC22_MYCGA/91-165,Q98Q28_MYCPU/91-165),RIR1_MYCPN/96-170)),Q9A175_STRPY/90-164))),((((((Q99CY1_BHV4/104-203,(Q9J2J1_9GAMA/117-213,P88952_HHV8/115-211)),RIR1_SHV21/87-187),((O36411_9GAMA/88-188,Q66663_9GAMA/103-203),O41962_MHV68/96-191)),(RIR1_EBV/90-182,Q993F4_9GAMA/95-187)),(Q9DWE5_RCMVM/394-483,RIR1_HHV7J/141-226)),(((Q9E1Z6_9ALPH/124-215,RIR1_VZVD/120-211),((Q9QH53_9ALPH/129-219,((O72889_FHV1/131-218,RIR1_PRVKA/187-273),(O39263_9ALPH/129-218,RIR1_BHV1C/131-220))),(Q89942_MEHV1/170-258,Q9WSX4_9ALPH/147-235))),(RIR1_HHV23/497-584,Q99BK3_9ALPH/138-224)))))),((Q9UYA0_PYRAB/113-268,((Q97CL0_THEVO/111-247,Q97ZH9_SULSO/114-198),((((O28609_ARCFU/1-81,O33839_THEMA/13-102),O53767_MYCTU/107-188),O26748_METTH/2-82),Q9HPG8_HALN1/26-171))),Q9YA77_AERPE/72-143)),(O55716_IRV6/12-79,(Q9ZD34_RICPR/19-85,Q9A2R4_CAUCR/36-102))),(Q9PJ87_CAMJE/134-210,RIR1_HELPJ/135-211)),(RIR1_AQUAE/152-230,(Q97E39_CLOAB/134-212,((Q9KFH8_BACHD/120-198,Q9PE32_XYLFA/208-292),RIR1_TREPA/237-314)))),RIR1_SYNY3/167-239),RIR1_BPT4/139-217),Q9JZ50_NEIMB/143-222),RIR1_SALTY/141-220,RIR1_BUCAI/141-220);
(((((((((((((((((RIR1_NEUCR/141-213:0.13575,RIR3_YEAST/141-213:0.16648):0.04539,RIR1_SCHPO/141-213:0.09337):0.03986,(RIR1_TRYBB/146-223:0.25957,O41111_CHVP1/155-227:0.44459):0.16163):0.01718,((((RIR1_CAEEL/147-219:0.14670,RIR1_VACCC/141-213:0.12121):0.03282,(RIR1_PLAF4/139-211:0.05751,RIR1_CRYPV/139-211:0.15969):0.12717):0.02206,(O41269_NPVSL/140-212:0.20603,RIR1_DROME/152-224:0.12604):0.04530):0.03554,RIR1_ARATH/141-213:0.14336):0.00000):0.05859,(O12935_9NUCL/138-210:0.22477,Q65357_NPVMB/132-204:0.44434):0.07332):0.04185,(RIR1_ASFB7/111-188:0.51474,Q9QAL9_WSSV/157-236:0.24845):0.15937):0.52662,Q9L3F5_STRCO/143-221:0.39403):0.28482,((Q9I4I1_PSEAE/293-368:0.30421,RIR1_CHLPN/375-451:0.31322):0.10906,Q9HMU3_HALN1/138-216:0.52311):0.17690):0.16950,((Q9RRW1_DEIRA/78-151:0.76732,Q9K940_BACHD/108-182:1.04048):0.36932,(((Q99VP2_STAAM/108-182:0.33874,((RIR1_BACSU/90-164:0.09011,O64173_BPSPC/89-163:0.11464):0.09308,Q9RZL7_DEIRA/90-163:0.69429):0.05330):0.12092,(((Q99Z63_STRPY/92-166:0.05505,Q97QM4_STRPN/92-166:0.15839):0.13363,Q9CGW7_LACLA/92-166:0.18404):0.05594,((((RIR1_MYCLE/105-179:0.09834,RIR3_ECOLI/97-171:0.24005):0.08212,O69273_CORAM/103-177:0.10781):0.18996,((Q9XC22_MYCGA/91-165:0.33918,Q98Q28_MYCPU/91-165:0.14382):0.06524,RIR1_MYCPN/96-170:0.24037):0.11883):0.05643,Q9A175_STRPY/90-164:0.30178):0.15908):0.04953):0.71109,((((((Q99CY1_BHV4/104-203:0.34094,(Q9J2J1_9GAMA/117-213:0.17711,P88952_HHV8/115-211:0.28956):0.20477):0.15315,RIR1_SHV21/87-187:0.43755):0.05130,((O36411_9GAMA/88-188:0.31904,Q66663_9GAMA/103-203:0.42733):0.10940,O41962_MHV68/96-191:0.26611):0.14306):0.20232,(RIR1_EBV/90-182:0.36898,Q993F4_9GAMA/95-187:0.32728):0.23239):0.25399,(Q9DWE5_RCMVM/394-483:0.93761,RIR1_HHV7J/141-226:1.31682):0.42514):0.25122,(((Q9E1Z6_9ALPH/124-215:0.23310,RIR1_VZVD/120-211:0.16898):0.20079,((Q9QH53_9ALPH/129-219:0.46861,((O72889_FHV1/131-218:0.36873,RIR1_PRVKA/187-273:0.36690):0.08511,(O39263_9ALPH/129-218:0.34492,RIR1_BHV1C/131-220:0.17950):0.05628):0.13878):0.14427,(Q89942_MEHV1/170-258:0.20317,Q9WSX4_9ALPH/147-235:0.06189):0.29731):0.03027):0.50824,(RIR1_HHV23/497-584:0.43864,Q99BK3_9ALPH/138-224:0.19220):0.38205):0.25258):0.74454):0.42815):0.07520):0.00000,((Q9UYA0_PYRAB/113-268:0.84588,((Q97CL0_THEVO/111-247:0.28623,Q97ZH9_SULSO/114-198:0.39564):0.09630,((((O28609_ARCFU/1-81:0.16963,O33839_THEMA/13-102:0.79172):0.10837,O53767_MYCTU/107-188:0.56068):0.08418,O26748_METTH/2-82:0.35308):0.05083,Q9HPG8_HALN1/26-171:0.76233):0.10699):0.05311):0.11625,Q9YA77_AERPE/72-143:0.92229):0.29353):0.04340,(O55716_IRV6/12-79:0.75251,(Q9ZD34_RICPR/19-85:0.22391,Q9A2R4_CAUCR/36-102:0.25902):0.20444):0.40783):0.23935,(Q9PJ87_CAMJE/134-210:0.07171,RIR1_HELPJ/135-211:0.32596):0.15649):0.15543,(RIR1_AQUAE/152-230:0.22868,(Q97E39_CLOAB/134-212:0.20348,((Q9KFH8_BACHD/120-198:0.21759,Q9PE32_XYLFA/208-292:0.36454):0.50911,RIR1_TREPA/237-314:0.33453):0.10559):0.13373):0.12831):0.33875,RIR1_SYNY3/167-239:0.64556):0.37275,RIR1_BPT4/139-217:0.17962):0.35504,Q9JZ50_NEIMB/143-222:0.06338):0.07375,RIR1_SALTY/141-220:0.02292,RIR1_BUCAI/141-220:0.18691);