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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00258 phylogeny
for restricted amino acid alignment


 
((((((((((((((Y534_METJA/249-383,Y732_METJA/252-385),((O28752_ARCFU/352-483,(O26322_METTH/265-400,FPRA_METTM/261-395)),O30070_ARCFU/196-327)),(O58812_PYRHO/269-403,Q9WZL4_THEMA/258-390)),(NORV_ECOLI/256-389,(FPRA_RHOCA/278-411,DFA3_SYNY3/285-417))),((((((O26935_METTH/12-130,FLAV_TREPA/6-140),((FLAW_ECOLI/5-160,((FLAV_HELPJ/6-155,(FLAV_KLEPN/6-160,FLAV_HAEIN/5-159)),((FLAW_KLEPN/5-166,FLAV_ENTAG/6-168),(FLAV_AZOCH/5-167,FLAV_RHOCA/5-167)))),((FLAV_SYNP2/5-159,(FLAV_SYNP7/5-159,FLAV_ANASP/6-159)),FLAV_SYNY3/6-160))),(FLAV_DESDE/6-140,((FLAV_DESGI/6-138,FLAW_DESGI/6-138),(FLAV_DESSA/6-138,(FLAV_DESVH/6-140,FLAV_DESVM/6-140))))),(FLAW_BACSU/6-139,FLAV_BACSU/6-139)),FLAV_CLOSA/5-148),((O59761_SCHPO/93-242,YP07_YEAST/207-355),(((MIOC_ECOLI/5-137,MIOC_HAEIN/5-137),(YQCA_SHIFL/6-140,YQCA_ERWCA/6-140)),(((CYSJ_ECOLI/65-196,O32214_BACSU/70-201),CYSJ_THIRO/62-193),(O68591_PSEAE/357-487,(((MTRR_CAEEL/6-142,MTRR_HUMAN/33-169),((YJ9F_YEAST/684-826,((((NCPR_HUMAN/81-218,P91655_DROMT/87-224),((NCPR_YEAST/62-198,NCPR_CANTR/62-199),(NCPR_SCHPO/55-203,NCPR_ASPNG/68-215))),((O48937_PETCR/76-219,O24425_ESCCA/97-240),Q43235_VICSA/85-229)),(((CPXB_BACME/484-616,CYPD_BACSU/495-627),CYPE_BACSU/488-620),C505_FUSOX/502-636))),(O94613_SCHPO/8-119,((Q9UHB4_HUMAN/8-145,(Q9U2Y8_CAEEL/5-142,Q9VSJ5_DROME/5-142)),Q9SRU4_ARATH/10-141)))),(((NOS1_RABIT/763-936,NOS3_HUMAN/521-697),((O77104_MANSE/521-715,(NOS_RHOPR/507-688,(NOS_ANOST/569-761,NOS_DROME/673-863))),NOS_LYMST/429-605)),((NS2A_HUMAN/541-672,NOS2_CHICK/538-669),(NOS2_ONCMY/171-302,Q9PU92_CYPCA/538-669)))))))))),FLAV_AQUAE/6-155),YHCB_BACSU/5-116),O29904_ARCFU/6-141),Q9RYU4_DEIRA/9-144),WRBA_ECOLI/5-134),WRBA_ZYMMO/6-135),((ALA7_ALTAL/7-139,CLH5_CLAHE/7-139),(P25_SCHPO/9-139,(Q9Y763_PHACH/6-136,(PST2_YEAST/6-135,YCP4_YEAST/6-137))))),O23207_ARATH/77-209),O23807_LITER/7-138,Q9XH74_PRUAR/7-138);
((((((((((((((Y534_METJA/249-383:0.26897,Y732_METJA/252-385:0.19782):0.32757,((O28752_ARCFU/352-483:0.36326,(O26322_METTH/265-400:0.35236,FPRA_METTM/261-395:0.25378):0.27650):0.11535,O30070_ARCFU/196-327:0.87370):0.09003):0.05757,(O58812_PYRHO/269-403:0.28908,Q9WZL4_THEMA/258-390:0.36024):1.11609):0.11795,(NORV_ECOLI/256-389:0.49323,(FPRA_RHOCA/278-411:0.74857,DFA3_SYNY3/285-417:0.80915):0.22319):0.14266):0.74672,((((((O26935_METTH/12-130:1.32035,FLAV_TREPA/6-140:0.62969):0.63035,((FLAW_ECOLI/5-160:0.60430,((FLAV_HELPJ/6-155:0.54175,(FLAV_KLEPN/6-160:0.06504,FLAV_HAEIN/5-159:0.16311):0.24613):0.08957,((FLAW_KLEPN/5-166:0.20424,FLAV_ENTAG/6-168:0.29294):0.23868,(FLAV_AZOCH/5-167:0.20820,FLAV_RHOCA/5-167:0.26011):0.08325):0.25181):0.08049):0.14269,((FLAV_SYNP2/5-159:0.27768,(FLAV_SYNP7/5-159:0.16602,FLAV_ANASP/6-159:0.20494):0.02236):0.05305,FLAV_SYNY3/6-160:0.10219):0.14353):0.66457):0.15047,(FLAV_DESDE/6-140:0.47938,((FLAV_DESGI/6-138:0.24827,FLAW_DESGI/6-138:0.23415):0.04899,(FLAV_DESSA/6-138:0.26438,(FLAV_DESVH/6-140:0.15524,FLAV_DESVM/6-140:0.26431):0.20486):0.05996):0.15210):0.23767):0.07023,(FLAW_BACSU/6-139:0.35556,FLAV_BACSU/6-139:0.64078):0.18210):0.15312,FLAV_CLOSA/5-148:2.01143):0.23612,((O59761_SCHPO/93-242:0.31037,YP07_YEAST/207-355:0.45014):1.20082,(((MIOC_ECOLI/5-137:0.40958,MIOC_HAEIN/5-137:0.29276):0.34316,(YQCA_SHIFL/6-140:0.19412,YQCA_ERWCA/6-140:0.30216):0.57029):0.35291,(((CYSJ_ECOLI/65-196:0.53404,O32214_BACSU/70-201:0.26740):0.14010,CYSJ_THIRO/62-193:0.39326):0.13443,(O68591_PSEAE/357-487:0.78584,(((MTRR_CAEEL/6-142:0.52164,MTRR_HUMAN/33-169:0.49811):0.31700,((YJ9F_YEAST/684-826:0.67505,((((NCPR_HUMAN/81-218:0.18147,P91655_DROMT/87-224:0.21190):0.19566,((NCPR_YEAST/62-198:0.49254,NCPR_CANTR/62-199:0.28607):0.15270,(NCPR_SCHPO/55-203:0.43570,NCPR_ASPNG/68-215:0.23108):0.10663):0.09425):0.20171,((O48937_PETCR/76-219:0.15045,O24425_ESCCA/97-240:0.09419):0.06143,Q43235_VICSA/85-229:0.08612):0.34720):0.13768,(((CPXB_BACME/484-616:0.38334,CYPD_BACSU/495-627:0.23611):0.16536,CYPE_BACSU/488-620:0.18843):0.33084,C505_FUSOX/502-636:0.48211):0.48801):0.17494):0.21449,(O94613_SCHPO/8-119:0.74855,((Q9UHB4_HUMAN/8-145:0.35937,(Q9U2Y8_CAEEL/5-142:0.36999,Q9VSJ5_DROME/5-142:0.38245):0.08455):0.10576,Q9SRU4_ARATH/10-141:0.38107):0.01101):0.18017):0.10906):0.08851,(((NOS1_RABIT/763-936:0.18326,NOS3_HUMAN/521-697:0.24426):0.07119,((O77104_MANSE/521-715:0.27764,(NOS_RHOPR/507-688:0.22771,(NOS_ANOST/569-761:0.05297,NOS_DROME/673-863:0.10449):0.08554):0.07825):0.15332,NOS_LYMST/429-605:0.46892):0.08622):0.13678,((NS2A_HUMAN/541-672:0.25181,NOS2_CHICK/538-669:0.13152):0.11027,(NOS2_ONCMY/171-302:0.10556,Q9PU92_CYPCA/538-669:0.18911):0.15939):0.17553):0.58692):0.12645):0.13495):0.14073):0.07079):0.41793):0.46592):0.43838,FLAV_AQUAE/6-155:1.39759):0.97421,YHCB_BACSU/5-116:0.67631):0.30237,O29904_ARCFU/6-141:0.32627):0.07174,Q9RYU4_DEIRA/9-144:0.91247):0.08755,WRBA_ECOLI/5-134:0.31464):0.05043,WRBA_ZYMMO/6-135:0.31253):0.39911,((ALA7_ALTAL/7-139:0.17849,CLH5_CLAHE/7-139:0.26468):0.08942,(P25_SCHPO/9-139:0.26808,(Q9Y763_PHACH/6-136:0.13015,(PST2_YEAST/6-135:0.17072,YCP4_YEAST/6-137:0.29086):0.11262):0.07442):0.09007):0.05529):0.21126,O23207_ARATH/77-209:0.22932):0.11731,O23807_LITER/7-138:0.12010,Q9XH74_PRUAR/7-138:0.12737);