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Protein and Associated NucleotideDomains with Inferred Trees

PF00249 phylogeny
for restricted amino acid alignment


 
((((((((((((((((((((((MYB3_HORVU/69-114,MYB86_ARATH/67-112),((MYB2_PHYPA/67-112,((O49538_ARATH/68-113,Q9ZTE4_ARATH/14-59),O49770_ARATH/14-59)),((O04110_ORYSA/67-112,O65720_ARATH/14-59),((Q43524_LYCES/67-112,((O23893_ORYSA/96-141,O65898_ARATH/13-58),O80883_ARATH/73-118)),((MYB21_ARATH/75-120,O49020_GOSHI/75-120),O50069_ARATH/63-108))))),((O22264_ARATH/67-112,O49019_GOSHI/67-112),(((((O49780_ARATH/14-59,Q02992_PETHY/67-112),O04109_ORYSA/67-112),((Q9ZTC8_ARATH/3-48,Q9ZR24_PERFR/33-78),(O04140_ORYSA/67-112,O04108_ORYSA/67-112))),((O64399_ARATH/67-112,(O49765_ARATH/67-112,O49782_ARATH/68-113)),O23618_ARATH/68-113)),(((Q9ZQS3_PERFR/10-55,(((Q9ZTC3_ARATH/63-108,MYBC_MAIZE/67-112),GL1_ARATH/69-114),Q39156_ARATH/35-80)),O22059_ARATH/35-80),MYB1_HORVU/67-112)))),((((((MYBH_DICDI/253-298,((MYBA_CHICK/139-184,MYB_DROME/188-233),(O65263_ARATH/124-169,O65528_ARATH/78-123))),(O22179_ARATH/65-110,Q42575_ARATH/107-152)),((Q9ZTD6_ARATH/3-48,Q9ZTD7_ARATH/58-103),O64502_ARATH/82-127)),O04192_ARATH/102-147),(MYB1_NEUCR/61-106,Q00658_EMENI/60-105)),Q9ZTE9_ARATH/14-59)),O65366_ANTMA/59-104),Q01073_KLULA/213-264),(((((O24251_PETCR/16-68,(((REB1_SCHPO/313-357,(Q12457_YEAST/345-389,REB1_KLULA/338-382)),P78793_SCHPO/32-81),YD3A_SCHPO/55-105)),TERF1_CRIGR/380-428),TERF2_MOUSE/442-490),(P70413_MOUSE/224-268,Q62187_MOUSE/564-608)),O22895_ARATH/127-173)),(((O62208_CAEEL/409-455,((CDC5_SCHPO/6-52,Q21119_CAEEL/8-54),CEF1_YEAST/10-56)),(O65366_ANTMA/4-53,(O62208_CAEEL/356-402,BAS1_YEAST/169-214))),((O65263_ARATH/69-118,(O65528_ARATH/26-72,((MYBA_CHICK/87-133,O01719_STRPU/93-139),(MYBH_DICDI/201-247,MYB_DROME/136-182)))),((MYB1_NEUCR/9-55,Q00658_EMENI/7-54),((((((GL1_ARATH/16-63,O49538_ARATH/14-62),(O23893_ORYSA/43-90,O80883_ARATH/20-67)),((MYB3_HORVU/16-63,Q43524_LYCES/14-61),((((O64534_ARATH/16-96,((Q96463_HORVU/12-59,(Q39153_ARATH/14-61,(O49649_ARATH/14-61,MYB2_PHYPA/14-61))),O49744_ARATH/14-61)),(O23892_ORYSA/22-69,Q38850_ARATH/25-72)),(O23891_ORYSA/14-61,(MYBC_MAIZE/14-61,(MYBP_MAIZE/14-61,Q40920_PICMA/14-61)))),((O04109_ORYSA/14-61,Q43597_ORYSA/14-61),(((MYB1_HORVU/14-61,O23618_ARATH/15-62),O04141_ORYSA/14-61),(Q38739_ANTMA/14-61,(O49765_ARATH/14-61,O49782_ARATH/15-62))))))),((O49017_GOSHI/15-62,O49018_GOSHI/14-61),Q9ZTC3_ARATH/10-57)),((MYB21_ARATH/22-69,Q39550_CRAPL/29-76),((O50069_ARATH/10-57,Q39028_ARATH/22-69),(O49020_GOSHI/22-69,P92986_ARATH/20-67)))),(((Q42575_ARATH/55-101,O22179_ARATH/13-59),O04192_ARATH/50-96),Q9ZTD7_ARATH/6-52)))))),((((MYBH_DICDI/149-195,(Q9ZPU2_ARATH/40-86,O65263_ARATH/12-63)),((MYBB_CHICK/31-77,MYBB_XENLA/31-77),(((O01719_STRPU/41-87,MYB_DROME/85-130),O64502_ARATH/30-76),((MYBA_CHICK/35-81,MYB_BOVIN/40-86),MYBA_XENLA/35-80)))),(((P70413_MOUSE/273-329,REB1_SCHPO/365-418),(O15816_DICDI/480-525,(O48523_ARATH/13-66,O64877_ARATH/47-101))),BAS1_YEAST/116-161)),(((YBF4_YEAST/75-120,DOT6_YEAST/72-117),((CDC5_SCHPO/58-102,CEF1_YEAST/62-106),O62208_CAEEL/301-350)),(ETA2_SCHPO/327-371,O15816_DICDI/427-474)))),TBF1_YEAST/409-456),((Q61866_MOUSE/451-507,(DNJC1_MOUSE/492-541,Q94216_CAEEL/533-582)),((((YEPA_SCHPO/247-292,Q9VF03_DROME/652-697),O22811_ARATH/225-270),(O13788_SCHPO/290-335,RSC8_YEAST/312-358)),SWI3_YEAST/524-569))),(Q19953_CAEEL/77-125,((ADA2_YEAST/62-108,O23486_ARATH/88-134),ADA2_HUMAN/72-118))),((O81713_ARATH/24-69,(Q9XEB2_ARATH/16-67,(((((Q9LTH4_ARATH/143-193,(ARR11_ARATH/195-246,ARR20_ARATH/213-268)),(Q9FPE8_ARATH/214-262,Q9FX84_ARATH/197-245)),(Q9ZPZ8_ARATH/88-139,(((Q9LSH8_ARATH/243-294,Q9M0H0_ARATH/227-278),Q9FG27_ARATH/193-244),((Q9S807_CHLRE/189-240,Q9SJW0_ARATH/17-68),(Q9FH42_ARATH/25-76,(Q9FK47_ARATH/47-98,(Q9LRN5_ARATH/43-110,Q9SVP8_ARATH/39-98))))))),((O82801_ARATH/56-104,Q9SIZ5_ARATH/84-135),Q9MA23_ARATH/25-76)),Q9FJV5_ARATH/107-158))),O04322_ARATH/118-165)),(YGN1_YEAST/557-602,SNT1_YEAST/889-934)),SPR1_CAEEL/483-528),((O94481_SCHPO/365-410,TFC5_YEAST/417-462),YDPA_SCHPO/71-116)),(NCOR1_HUMAN/625-670,Q15044_HUMAN/294-339)),((((Q20733_CAEEL/562-607,O80435_ARATH/19-68),O42194_XENLA/274-320),O75046_HUMAN/153-199),(Q15044_HUMAN/103-148,GEI8_CAEEL/215-260))),EGL27_CAEEL/334-380),(MTA1_HUMAN/285-331,O61907_CAEEL/481-527)),NCOR2_HUMAN/429-474),SNT1_YEAST/670-716,NCOR1_HUMAN/437-482);
((((((((((((((((((((((MYB3_HORVU/69-114:0.20039,MYB86_ARATH/67-112:0.12600):0.13797,((MYB2_PHYPA/67-112:0.08405,((O49538_ARATH/68-113:0.05658,Q9ZTE4_ARATH/14-59:0.21613):0.16547,O49770_ARATH/14-59:0.37204):0.10703):0.06190,((O04110_ORYSA/67-112:0.17219,O65720_ARATH/14-59:0.25209):0.09668,((Q43524_LYCES/67-112:0.20919,((O23893_ORYSA/96-141:0.16904,O65898_ARATH/13-58:0.12624):0.12349,O80883_ARATH/73-118:0.09999):0.07676):0.02349,((MYB21_ARATH/75-120:0.07132,O49020_GOSHI/75-120:0.13977):0.06332,O50069_ARATH/63-108:0.19663):0.20662):0.04448):0.07032):0.05733):0.01497,((O22264_ARATH/67-112:0.13469,O49019_GOSHI/67-112:0.11242):0.04163,(((((O49780_ARATH/14-59:0.34897,Q02992_PETHY/67-112:0.05750):0.03162,O04109_ORYSA/67-112:0.27943):0.08080,((Q9ZTC8_ARATH/3-48:0.12772,Q9ZR24_PERFR/33-78:0.20126):0.06797,(O04140_ORYSA/67-112:0.03749,O04108_ORYSA/67-112:0.22075):0.13478):0.03115):0.04421,((O64399_ARATH/67-112:0.21456,(O49765_ARATH/67-112:0.16394,O49782_ARATH/68-113:0.19213):0.03131):0.05751,O23618_ARATH/68-113:0.20254):0.03133):0.06097,(((Q9ZQS3_PERFR/10-55:0.14849,(((Q9ZTC3_ARATH/63-108:0.20396,MYBC_MAIZE/67-112:0.14271):0.01214,GL1_ARATH/69-114:0.15380):0.04858,Q39156_ARATH/35-80:0.26022):0.01793):0.04786,O22059_ARATH/35-80:0.79899):0.00000,MYB1_HORVU/67-112:0.12076):0.04243):0.04689):0.07931):0.03021,((((((MYBH_DICDI/253-298:0.16785,((MYBA_CHICK/139-184:0.17773,MYB_DROME/188-233:0.17328):0.14245,(O65263_ARATH/124-169:0.27197,O65528_ARATH/78-123:0.18353):0.16799):0.00727):0.16014,(O22179_ARATH/65-110:0.35037,Q42575_ARATH/107-152:0.07570):0.00110):0.08194,((Q9ZTD6_ARATH/3-48:0.28775,Q9ZTD7_ARATH/58-103:0.00000):0.16293,O64502_ARATH/82-127:0.76296):0.20694):0.09937,O04192_ARATH/102-147:0.14468):0.15452,(MYB1_NEUCR/61-106:0.35704,Q00658_EMENI/60-105:0.44007):0.61385):0.10957,Q9ZTE9_ARATH/14-59:0.16574):0.10511):0.38011,O65366_ANTMA/59-104:0.64857):0.18640,Q01073_KLULA/213-264:0.74957):0.14239,(((((O24251_PETCR/16-68:0.41546,(((REB1_SCHPO/313-357:0.40624,(Q12457_YEAST/345-389:0.11402,REB1_KLULA/338-382:0.14652):0.37822):0.28240,P78793_SCHPO/32-81:0.67357):0.24279,YD3A_SCHPO/55-105:0.42289):0.23740):0.33888,TERF1_CRIGR/380-428:0.16977):0.22135,TERF2_MOUSE/442-490:0.17717):0.32438,(P70413_MOUSE/224-268:0.18186,Q62187_MOUSE/564-608:0.87694):0.60224):0.15590,O22895_ARATH/127-173:1.09361):0.29002):0.07315,(((O62208_CAEEL/409-455:0.88582,((CDC5_SCHPO/6-52:0.17331,Q21119_CAEEL/8-54:0.07653):0.24637,CEF1_YEAST/10-56:0.14806):0.31874):0.20525,(O65366_ANTMA/4-53:0.61106,(O62208_CAEEL/356-402:0.39348,BAS1_YEAST/169-214:0.95942):0.08242):0.13529):0.15014,((O65263_ARATH/69-118:0.36076,(O65528_ARATH/26-72:0.16973,((MYBA_CHICK/87-133:0.02143,O01719_STRPU/93-139:0.23164):0.05763,(MYBH_DICDI/201-247:0.14445,MYB_DROME/136-182:0.21748):0.06356):0.09044):0.07529):0.05018,((MYB1_NEUCR/9-55:0.37111,Q00658_EMENI/7-54:0.25784):0.34396,((((((GL1_ARATH/16-63:0.26070,O49538_ARATH/14-62:0.32421):0.07608,(O23893_ORYSA/43-90:0.18734,O80883_ARATH/20-67:0.13137):0.23565):0.05384,((MYB3_HORVU/16-63:0.19917,Q43524_LYCES/14-61:0.17821):0.27633,((((O64534_ARATH/16-96:0.21783,((Q96463_HORVU/12-59:0.36296,(Q39153_ARATH/14-61:0.23115,(O49649_ARATH/14-61:0.20323,MYB2_PHYPA/14-61:0.13070):0.10942):0.03056):0.05089,O49744_ARATH/14-61:0.00000):0.09623):0.06799,(O23892_ORYSA/22-69:0.28012,Q38850_ARATH/25-72:0.03299):0.08932):0.06574,(O23891_ORYSA/14-61:0.16592,(MYBC_MAIZE/14-61:0.30321,(MYBP_MAIZE/14-61:0.22799,Q40920_PICMA/14-61:0.14832):0.00000):0.08787):0.09103):0.02124,((O04109_ORYSA/14-61:0.20993,Q43597_ORYSA/14-61:0.29725):0.00000,(((MYB1_HORVU/14-61:0.21035,O23618_ARATH/15-62:0.15801):0.08214,O04141_ORYSA/14-61:0.07583):0.06226,(Q38739_ANTMA/14-61:0.19810,(O49765_ARATH/14-61:0.15943,O49782_ARATH/15-62:0.12496):0.09057):0.08796):0.05714):0.05974):0.09287):0.04446):0.01221,((O49017_GOSHI/15-62:0.13949,O49018_GOSHI/14-61:0.14147):0.26202,Q9ZTC3_ARATH/10-57:0.31739):0.21510):0.12569,((MYB21_ARATH/22-69:0.09160,Q39550_CRAPL/29-76:0.15939):0.12993,((O50069_ARATH/10-57:0.36303,Q39028_ARATH/22-69:0.05200):0.13145,(O49020_GOSHI/22-69:0.18116,P92986_ARATH/20-67:0.18825):0.05153):0.08176):0.06811):0.46515,(((Q42575_ARATH/55-101:0.19335,O22179_ARATH/13-59:0.10948):0.03481,O04192_ARATH/50-96:0.25213):0.14301,Q9ZTD7_ARATH/6-52:0.38222):0.09606):0.23626):0.03140):0.14545):0.06691):0.00000,((((MYBH_DICDI/149-195:0.14147,(Q9ZPU2_ARATH/40-86:0.24379,O65263_ARATH/12-63:0.61176):0.11951):0.16017,((MYBB_CHICK/31-77:0.19638,MYBB_XENLA/31-77:0.22893):0.14716,(((O01719_STRPU/41-87:0.25899,MYB_DROME/85-130:0.50860):0.07217,O64502_ARATH/30-76:0.82710):0.09204,((MYBA_CHICK/35-81:0.13539,MYB_BOVIN/40-86:0.10599):0.11158,MYBA_XENLA/35-80:0.22496):0.00000):0.09741):0.15859):0.06058,(((P70413_MOUSE/273-329:0.60627,REB1_SCHPO/365-418:0.62491):0.30905,(O15816_DICDI/480-525:0.28559,(O48523_ARATH/13-66:0.04182,O64877_ARATH/47-101:0.47926):0.95926):0.23936):0.28991,BAS1_YEAST/116-161:0.47100):0.21144):0.06546,(((YBF4_YEAST/75-120:0.03180,DOT6_YEAST/72-117:0.21154):1.04394,((CDC5_SCHPO/58-102:0.00770,CEF1_YEAST/62-106:0.61867):0.46204,O62208_CAEEL/301-350:0.74092):0.08830):0.20261,(ETA2_SCHPO/327-371:0.95576,O15816_DICDI/427-474:0.24509):0.43561):0.01588):0.25630):0.29493,TBF1_YEAST/409-456:1.08975):0.28179,((Q61866_MOUSE/451-507:0.88792,(DNJC1_MOUSE/492-541:0.29331,Q94216_CAEEL/533-582:0.63139):0.31500):0.11402,((((YEPA_SCHPO/247-292:0.33301,Q9VF03_DROME/652-697:0.26723):0.04714,O22811_ARATH/225-270:0.58584):0.19381,(O13788_SCHPO/290-335:0.39154,RSC8_YEAST/312-358:0.32142):0.04637):0.22161,SWI3_YEAST/524-569:0.37658):0.30793):0.36631):0.06716,(Q19953_CAEEL/77-125:0.89606,((ADA2_YEAST/62-108:0.39101,O23486_ARATH/88-134:0.33290):0.21874,ADA2_HUMAN/72-118:0.47501):0.08341):0.24687):0.17733,((O81713_ARATH/24-69:0.19611,(Q9XEB2_ARATH/16-67:0.19721,(((((Q9LTH4_ARATH/143-193:0.21030,(ARR11_ARATH/195-246:0.33542,ARR20_ARATH/213-268:0.26494):0.07493):0.16506,(Q9FPE8_ARATH/214-262:0.14999,Q9FX84_ARATH/197-245:0.07873):0.20390):0.17821,(Q9ZPZ8_ARATH/88-139:0.37124,(((Q9LSH8_ARATH/243-294:0.10840,Q9M0H0_ARATH/227-278:0.14123):0.04012,Q9FG27_ARATH/193-244:0.28382):0.05930,((Q9S807_CHLRE/189-240:0.13004,Q9SJW0_ARATH/17-68:0.13072):0.02100,(Q9FH42_ARATH/25-76:0.14782,(Q9FK47_ARATH/47-98:0.12782,(Q9LRN5_ARATH/43-110:0.06324,Q9SVP8_ARATH/39-98:0.10592):0.10770):0.07657):0.07276):0.03403):0.05400):0.00876):0.15460,((O82801_ARATH/56-104:0.13356,Q9SIZ5_ARATH/84-135:0.08710):0.07345,Q9MA23_ARATH/25-76:0.20255):0.04552):0.06744,Q9FJV5_ARATH/107-158:0.16845):0.16230):0.99079):0.18164,O04322_ARATH/118-165:0.55944):0.11325):0.30774,(YGN1_YEAST/557-602:1.13091,SNT1_YEAST/889-934:0.55840):0.24883):0.12501,SPR1_CAEEL/483-528:1.05153):0.16962,((O94481_SCHPO/365-410:0.33028,TFC5_YEAST/417-462:0.35042):0.71305,YDPA_SCHPO/71-116:0.75032):0.08033):0.18871,(NCOR1_HUMAN/625-670:0.56237,Q15044_HUMAN/294-339:0.34853):0.30996):0.36112,((((Q20733_CAEEL/562-607:0.46168,O80435_ARATH/19-68:0.78302):0.37779,O42194_XENLA/274-320:0.37797):0.08437,O75046_HUMAN/153-199:0.57898):0.20561,(Q15044_HUMAN/103-148:0.36186,GEI8_CAEEL/215-260:0.87618):0.18448):0.19370):0.20420,EGL27_CAEEL/334-380:0.72016):0.08005,(MTA1_HUMAN/285-331:0.11320,O61907_CAEEL/481-527:0.40722):0.34676):0.76615,NCOR2_HUMAN/429-474:0.10280):0.17151,SNT1_YEAST/670-716:1.03783,NCOR1_HUMAN/437-482:0.01286);