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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00234 phylogeny
for restricted amino acid alignment


 
((((((((((((((((((((NLTP_HELAN/28-112,O24440_PHAVU/29-112),(((((((NLTPA_BRAOT/29-114,((NLTP1_BRANA/29-113,NLTP5_ARATH/29-114),NLTP1_ARATH/29-114)),Q9ZUK6_ARATH/29-118),Q9ZSL7_BRANA/27-108),Q39332_BRANA/28-112),SCA_LILLO/25-109),NLTP3_PRUDU/33-119),(NLTP6_GOSHI/32-116,NLTP1_GOSHI/27-112))),(NLTP_DAUCA/30-116,NLTP_GERHY/28-112)),(NLTP_CICAR/27-111,(((NLTP1_TOBAC/27-110,O24038_LYCPN/27-110),((Q9SDS4_CAPAN/19-102,Q9SDS2_CAPAN/27-110),NLTP1_LYCES/27-110)),(NLTP_BETVU/29-113,NLTP_SPIOL/30-113)))),(NLTP5_ORYSA/28-113,((((NLTP1_HORVU/29-113,NLTP1_WHEAT/26-110),NLTP1_ORYSA/28-112),NLTP4_ORYSA/10-95),(NLTP8_HORVU/29-111,(NLT41_HORVU/29-111,(Q42848_HORVU/33-118,NLTP3_HORVU/29-114)))))),Q9SES6_HORVU/32-117),NLTP_PINTA/34-119),(Q9ZPW9_ARATH/28-112,((O24485_PINRA/36-122,((NLTP6_AMBAR/30-113,Q40453_TOBAC/25-114),O24355_SILLA/25-110)),(NLT21_PARJU/35-121,(NLTPC_RICCO/28-112,NLTP_STRHE/10-89))))),O49116_ARATH/29-125),(O49644_ARATH/39-110,O49648_ARATH/34-105)),((Q41126_PHAVU/30-102,(O24101_MEDTR/31-102,(O65561_ARATH/29-103,O81872_ARATH/32-107))),(((Q9SI70_ARATH/29-101,(Q9SA59_ARATH/25-103,(O64864_ARATH/36-113,((O22272_ARATH/48-125,Q9ZQI8_ARATH/27-105),Q9ZVC7_ARATH/40-120)))),O22110_PICAB/25-104),(Q9SHA0_ARATH/27-109,(Q43496_LYCES/28-101,(Q9SRS1_ARATH/32-105,Q9SUZ2_ARATH/48-121)))))),((((Q9XF30_ORYSA/41-111,(NLTP2_HORVU/37-102,(O81135_HORVU/27-92,Q40631_ORYSA/30-95))),P93191_HORVU/31-96),((O64431_BRACM/21-86,Q42158_ARATH/29-94),NLTP_VIGUN/34-99)),(Q41378_9ASTR/24-89,Q42392_ZINEL/30-95))),((Q9STH5_ARATH/42-113,O24486_PINRA/39-97),((Q9SUX0_ARATH/37-116,((Q9SUV8_ARATH/28-104,Q9SUW7_ARATH/37-117),((O65368_ARATH/32-112,((((Q39100_ARATH/48-126,(CCDP_MAIZE/48-127,Q42474_ORYSA/65-146)),(14KD_DAUCA/54-136,Q43522_LYCES/127-207)),(((O81318_ARATH/317-399,Q9ST25_MAIZE/51-132),(((Q42044_ARATH/52-133,Q40335_MEDSA/84-165),Q41125_PHAVU/45-126),Q39574_CATRO/55-137)),Q40721_ORYSA/52-133)),((Q42487_POPNI/58-140,(((O82439_ARATH/25-107,Q9SUX3_ARATH/50-132),O65369_ARATH/55-137),Q9ZTW2_FRAAN/73-155)),(Q39176_ARATH/85-167,Q9S7U3_ARATH/46-128)))),(Q9SU32_ARATH/34-115,(P93611_WHEAT/84-166,((PRF1_LYCES/261-343,Q9SET1_ARATH/222-304),(((P93274_MALDO/2-73,O23370_ARATH/181-264),Q41848_MAIZE/215-296),(((P93705_DAUCA/264-345,Q06763_SOYBN/68-149),(Q96232_ASPOF/101-182,Q9SKI0_ARATH/208-289)),Q9SXE7_ARATH/212-293)))))))),AMP1_ALLCE/31-116))),(MC1_PINRA/28-88,(((((A9_ARATH/27-87,A9_BRANA/32-92),MEN8_SILLA/38-98),FIL1_ANTMA/31-90),108_LYCES/35-99),(LIM1_LILLO/29-88,(Q9SBW9_MAIZE/43-101,(YY1_ORYSA/31-94,ZM33_MAIZE/45-108)))))),(IAA1_WHEAT/6-115,(IAA1_HORVU/20-131,((Q40652_ORYSA/41-153,Q40654_ORYSA/41-149),((Q40655_ORYSA/42-152,O49178_ORYSA/42-149),RA17_ORYSA/39-149))))),((((PUIA_WHEAT/48-138,PUIB_WHEAT/50-140),(P93513_9POAL/63-154,Q9SC06_TRIMO/34-125)),(((((GDB1_WHEAT/134-288,(HOR1_HORVU/143-282,GDB3_WHEAT/87-228)),(GLTA_WHEAT/197-341,P93794_WHEAT/195-344)),(((GDA2_WHEAT/143-280,((GDA0_WHEAT/146-275,GDA8_WHEAT/46-175),GDA5_WHEAT/152-306)),GDA6_WHEAT/155-283),((Q09071_AVESA/48-166,(AVE3_AVESA/69-210,Q09072_AVESA/74-212)),((Q41320_SECCE/55-178,(GDBX_WHEAT/171-285,(GDB2_WHEAT/184-310,Q41543_WHEAT/137-262))),HOG1_HORVU/166-288)))),(PRO2_ORYSA/47-143,PRO7_ORYSA/41-137)),((GLU2_MAIZE/128-213,ZEB2_MAIZE/86-172),Q00318_COILA/103-188))),(((((((((Q39787_GOSHI/36-131,2SS8_HELAN/49-139),(2SS_BEREX/40-137,P93198_9ROSI/39-132)),2SS_RICCO/162-256),(Q39649_9ROSI/55-139,2SS_RICCO/61-155)),Q9XHP1_SESIN/54-141),((2SS5_HELAN/190-290,((2SS1_ARATH/59-153,2SS2_ARATH/58-158),(Q41168_RAPSA/29-141,(2SSE_BRANA/60-174,2SS1_BRANA/16-122)))),(2SS5_HELAN/53-148,Q39928_HELAN/52-143))),((2SS_SOYBN/43-152,Q9SQG5_ARAHY/31-120),(((O64930_PSEMZ/43-158,O64931_PSEMZ/44-155),(((Q40996_PINST/48-156,Q40995_PINST/69-175),(2SSL_PICGL/52-156,Q40997_PINST/58-160)),O64929_PSEMZ/42-147)),O81410_PICGL/53-146))),PRO1_ORYSA/43-134),GL19_ORYSA/48-178))),IA03_WHEAT/43-159),IA16_WHEAT/30-134),(IAAE_HORVU/29-137,ITRF_MAIZE/34-143)),IA01_WHEAT/30-140,IAAA_HORVU/30-140);
((((((((((((((((((((NLTP_HELAN/28-112:0.08369,O24440_PHAVU/29-112:0.24257):0.06671,(((((((NLTPA_BRAOT/29-114:0.14503,((NLTP1_BRANA/29-113:0.16538,NLTP5_ARATH/29-114:0.35388):0.07161,NLTP1_ARATH/29-114:0.10148):0.08882):0.08952,Q9ZUK6_ARATH/29-118:0.41330):0.11635,Q9ZSL7_BRANA/27-108:0.23217):0.02223,Q39332_BRANA/28-112:0.44177):0.13482,SCA_LILLO/25-109:0.37148):0.04693,NLTP3_PRUDU/33-119:0.27939):0.06077,(NLTP6_GOSHI/32-116:0.36879,NLTP1_GOSHI/27-112:0.12901):0.10480):0.03629):0.01598,(NLTP_DAUCA/30-116:0.25693,NLTP_GERHY/28-112:0.30096):0.16492):0.06258,(NLTP_CICAR/27-111:0.23682,(((NLTP1_TOBAC/27-110:0.15536,O24038_LYCPN/27-110:0.12414):0.09583,((Q9SDS4_CAPAN/19-102:0.47219,Q9SDS2_CAPAN/27-110:0.20481):0.04146,NLTP1_LYCES/27-110:0.03788):0.04003):0.17770,(NLTP_BETVU/29-113:0.18404,NLTP_SPIOL/30-113:0.13533):0.08947):0.10781):0.02047):0.04306,(NLTP5_ORYSA/28-113:0.45684,((((NLTP1_HORVU/29-113:0.10162,NLTP1_WHEAT/26-110:0.20461):0.35579,NLTP1_ORYSA/28-112:0.02930):0.10550,NLTP4_ORYSA/10-95:0.33893):0.05242,(NLTP8_HORVU/29-111:0.21248,(NLT41_HORVU/29-111:0.04836,(Q42848_HORVU/33-118:0.28886,NLTP3_HORVU/29-114:0.00000):0.17256):0.02557):0.16364):0.09434):0.07842):0.13522,Q9SES6_HORVU/32-117:0.59078):0.08117,NLTP_PINTA/34-119:0.53486):0.16213,(Q9ZPW9_ARATH/28-112:0.58940,((O24485_PINRA/36-122:0.78591,((NLTP6_AMBAR/30-113:0.60474,Q40453_TOBAC/25-114:0.38665):0.11639,O24355_SILLA/25-110:0.66865):0.11464):0.11380,(NLT21_PARJU/35-121:0.54578,(NLTPC_RICCO/28-112:0.16232,NLTP_STRHE/10-89:0.28073):0.45850):0.25880):0.10526):0.05005):0.09121,O49116_ARATH/29-125:1.16061):0.05730,(O49644_ARATH/39-110:0.61376,O49648_ARATH/34-105:0.22159):0.87970):0.43562,((Q41126_PHAVU/30-102:0.72758,(O24101_MEDTR/31-102:0.62850,(O65561_ARATH/29-103:0.59209,O81872_ARATH/32-107:0.36123):0.66947):0.18744):0.24002,(((Q9SI70_ARATH/29-101:0.94755,(Q9SA59_ARATH/25-103:0.45948,(O64864_ARATH/36-113:0.86485,((O22272_ARATH/48-125:0.71470,Q9ZQI8_ARATH/27-105:0.33380):0.15192,Q9ZVC7_ARATH/40-120:0.70099):0.14072):0.20654):0.19058):0.11146,O22110_PICAB/25-104:0.62997):0.11765,(Q9SHA0_ARATH/27-109:1.03205,(Q43496_LYCES/28-101:0.39073,(Q9SRS1_ARATH/32-105:0.30368,Q9SUZ2_ARATH/48-121:0.19344):0.10237):0.45898):0.31651):0.17269):0.00000):0.19761,((((Q9XF30_ORYSA/41-111:0.53675,(NLTP2_HORVU/37-102:0.25472,(O81135_HORVU/27-92:0.53615,Q40631_ORYSA/30-95:0.24593):0.08393):0.18050):0.14469,P93191_HORVU/31-96:0.24264):0.19388,((O64431_BRACM/21-86:0.26374,Q42158_ARATH/29-94:0.29993):0.08579,NLTP_VIGUN/34-99:0.27665):0.05376):0.03751,(Q41378_9ASTR/24-89:0.28069,Q42392_ZINEL/30-95:0.16788):0.05097):0.37542):0.18933,((Q9STH5_ARATH/42-113:0.84780,O24486_PINRA/39-97:0.39861):0.19681,((Q9SUX0_ARATH/37-116:0.66538,((Q9SUV8_ARATH/28-104:0.52924,Q9SUW7_ARATH/37-117:0.55077):0.52108,((O65368_ARATH/32-112:0.31858,((((Q39100_ARATH/48-126:0.17597,(CCDP_MAIZE/48-127:0.19091,Q42474_ORYSA/65-146:0.22980):0.19096):0.08366,(14KD_DAUCA/54-136:0.16107,Q43522_LYCES/127-207:0.19088):0.04712):0.00000,(((O81318_ARATH/317-399:0.38498,Q9ST25_MAIZE/51-132:0.30933):0.10849,(((Q42044_ARATH/52-133:0.07842,Q40335_MEDSA/84-165:0.20776):0.05461,Q41125_PHAVU/45-126:0.21580):0.05266,Q39574_CATRO/55-137:0.14164):0.03505):0.08929,Q40721_ORYSA/52-133:0.19987):0.04680):0.05280,((Q42487_POPNI/58-140:0.11570,(((O82439_ARATH/25-107:0.19043,Q9SUX3_ARATH/50-132:0.26188):0.09829,O65369_ARATH/55-137:0.09336):0.08713,Q9ZTW2_FRAAN/73-155:0.14760):0.02354):0.02406,(Q39176_ARATH/85-167:0.18531,Q9S7U3_ARATH/46-128:0.14402):0.06180):0.10411):0.07710):0.07862,(Q9SU32_ARATH/34-115:0.45911,(P93611_WHEAT/84-166:0.35484,((PRF1_LYCES/261-343:0.12850,Q9SET1_ARATH/222-304:0.14181):0.04843,(((P93274_MALDO/2-73:0.25262,O23370_ARATH/181-264:0.14342):0.01616,Q41848_MAIZE/215-296:0.34440):0.20553,(((P93705_DAUCA/264-345:0.13708,Q06763_SOYBN/68-149:0.14235):0.18984,(Q96232_ASPOF/101-182:0.07801,Q9SKI0_ARATH/208-289:0.19082):0.03636):0.10675,Q9SXE7_ARATH/212-293:0.18906):0.14076):0.02999):0.08894):0.30497):0.00000):0.30624):0.21058):0.34077,AMP1_ALLCE/31-116:1.68923):0.72773):0.21818):0.20187,(MC1_PINRA/28-88:0.55499,(((((A9_ARATH/27-87:0.13610,A9_BRANA/32-92:0.11898):0.50999,MEN8_SILLA/38-98:0.22398):0.11398,FIL1_ANTMA/31-90:0.16998):0.05552,108_LYCES/35-99:0.27589):0.24501,(LIM1_LILLO/29-88:0.46827,(Q9SBW9_MAIZE/43-101:0.46277,(YY1_ORYSA/31-94:0.18983,ZM33_MAIZE/45-108:0.36764):0.17519):0.18284):0.12941):0.25801):0.09499):0.57545,(IAA1_WHEAT/6-115:0.55271,(IAA1_HORVU/20-131:0.30531,((Q40652_ORYSA/41-153:0.09770,Q40654_ORYSA/41-149:0.24039):0.06807,((Q40655_ORYSA/42-152:0.00000,O49178_ORYSA/42-149:0.71357):0.09976,RA17_ORYSA/39-149:0.18083):0.04710):0.21564):0.27303):0.59470):0.36544,((((PUIA_WHEAT/48-138:0.45196,PUIB_WHEAT/50-140:0.39663):0.17139,(P93513_9POAL/63-154:0.17356,Q9SC06_TRIMO/34-125:0.22996):0.29886):0.77657,(((((GDB1_WHEAT/134-288:0.05106,(HOR1_HORVU/143-282:0.11175,GDB3_WHEAT/87-228:0.04842):0.01657):0.00674,(GLTA_WHEAT/197-341:0.02789,P93794_WHEAT/195-344:0.00944):0.08601):0.24474,(((GDA2_WHEAT/143-280:0.05378,((GDA0_WHEAT/146-275:0.00849,GDA8_WHEAT/46-175:0.10464):0.04516,GDA5_WHEAT/152-306:0.06394):0.01018):0.00104,GDA6_WHEAT/155-283:0.17271):0.32818,((Q09071_AVESA/48-166:0.20558,(AVE3_AVESA/69-210:0.04966,Q09072_AVESA/74-212:0.07941):0.12696):0.08367,((Q41320_SECCE/55-178:0.30085,(GDBX_WHEAT/171-285:0.06698,(GDB2_WHEAT/184-310:0.07675,Q41543_WHEAT/137-262:0.07081):0.01701):0.03766):0.09315,HOG1_HORVU/166-288:0.24990):0.09066):0.05339):0.06799):0.28538,(PRO2_ORYSA/47-143:0.20957,PRO7_ORYSA/41-137:0.03804):0.63209):0.07190,((GLU2_MAIZE/128-213:0.11241,ZEB2_MAIZE/86-172:0.18420):0.08687,Q00318_COILA/103-188:0.06823):0.64186):0.25365):0.22973,(((((((((Q39787_GOSHI/36-131:0.77680,2SS8_HELAN/49-139:0.93671):0.19315,(2SS_BEREX/40-137:0.55892,P93198_9ROSI/39-132:0.27131):0.07491):0.10872,2SS_RICCO/162-256:0.62251):0.19135,(Q39649_9ROSI/55-139:0.44656,2SS_RICCO/61-155:0.89502):0.16666):0.07929,Q9XHP1_SESIN/54-141:0.64974):0.11079,((2SS5_HELAN/190-290:0.53273,((2SS1_ARATH/59-153:0.06973,2SS2_ARATH/58-158:0.31947):0.07045,(Q41168_RAPSA/29-141:0.04698,(2SSE_BRANA/60-174:0.14837,2SS1_BRANA/16-122:0.18927):0.09542):0.26891):0.63019):0.09888,(2SS5_HELAN/53-148:0.12235,Q39928_HELAN/52-143:0.12801):0.35957):0.24547):0.14449,((2SS_SOYBN/43-152:0.52110,Q9SQG5_ARAHY/31-120:0.40037):0.60929,(((O64930_PSEMZ/43-158:0.22891,O64931_PSEMZ/44-155:0.20124):0.02146,(((Q40996_PINST/48-156:0.26150,Q40995_PINST/69-175:0.11866):0.08922,(2SSL_PICGL/52-156:0.08947,Q40997_PINST/58-160:0.23664):0.05289):0.06635,O64929_PSEMZ/42-147:0.18456):0.04152):0.12753,O81410_PICGL/53-146:0.23845):0.54336):0.23497):0.15767,PRO1_ORYSA/43-134:0.77633):0.05785,GL19_ORYSA/48-178:0.96414):0.10459):0.24377):0.96368,IA03_WHEAT/43-159:0.49598):0.23231,IA16_WHEAT/30-134:0.18183):0.19703,(IAAE_HORVU/29-137:0.58810,ITRF_MAIZE/34-143:0.19918):0.53668):0.30591,IA01_WHEAT/30-140:0.10954,IAAA_HORVU/30-140:0.13725);