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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00173 phylogeny
for restricted amino acid alignment


 
((((((((((((((((((((((((((NIA1_ARATH/547-620,(NIA1_BRANA/541-614,NIA2_BRANA/541-614)),(NIA1_PHAVU/517-590,(((NIA1_SOYBN/515-588,Q9SYR0_SOYBN/519-592),O48930_SOYBN/505-578),NIA2_SOYBN/519-592))),NIA2_ARATH/544-617),(((NIA_SPIOL/553-626,((Q43042_PETHY/543-616,NIA_PETHY/537-610),(((NIA2_TOBAC/533-606,Q41201_NICPL/9-74),NIA1_TOBAC/533-606),((O24390_SOLTU/538-611,O04926_SOLTU/538-611),NIA_LYCES/538-611)))),Q9FUC2_RICCO/536-609),(NIA2_PHAVU/515-588,(NIA_LOTJA/523-596,NIA_CUCMA/545-618)))),(NIA_BETVE/530-603,((P92922_AGRGI/125-198,P92920_AGRGI/257-330),P92921_AGRGI/115-188))),NIA_CICIN/536-609),((((Q41613_TRIMO/5-78,Q39992_HORSP/5-78),(NIA2_HORVU/537-610,NIA1_HORVU/540-613)),NIA7_HORVU/517-590),(((((Q9XGW5_MAIZE/540-613,Q43265_MAIZE/131-204),NIA3_MAIZE/522-595),NIA1_ORYSA/543-616),Q38791_9POAL/2-75),((Q39966_9POAL/5-78,((Q39993_9POAL/5-78,Q39984_9POAL/5-78),(Q39976_9POAL/5-78,Q39971_HORCH/5-78))),Q41318_SECCE/5-78)))),(((NIA_VOLCA/499-572,Q9SDY3_CHLRE/510-583),((NIA_CHLVU/218-291,Q42497_CHLVU/504-577),(Q9UVH6_HEBCY/545-618,(((Q9P942_HANAN/515-588,NIA_USTMA/516-592),NIA_PICAN/504-578),(((((Q00284_ASPPA/516-589,Q12561_ASPOR/516-589),Q01696_PENCH/513-586),NIA_EMENI/514-587),(NIA_LEPMC/538-611,O00101_PHANO/537-610)),(((Q92237_GIBFU/550-623,NIA_FUSOX/548-621),O13486_METAN/539-612),(NIA_BEABA/537-610,(Q00303_BOTCI/540-612,NIA_NEUCR/619-692)))))))),NIA_PHYIN/539-612)),CYB5_ECTVA/9-87),Q9VQY5_DROME/10-118),((((((Q9M5B0_PETHY/6-80,Q9ZSP7_PETHY/6-80),Q9VUZ3_DROME/4-80),(CYB5_YEAST/4-78,CYB51_SCHPO/5-79)),CYB52_SCHPO/5-79),((((CYB5_ORYSA/8-82,(CYB5_CUSRE/6-80,(((CYB5_BOROF/4-78,CYB5S_TOBAC/7-81),(Q9ZWT2_ARATH/7-81,O24651_OLEEU/4-78)),CYB52_ARATH/7-81))),((CYB51_ARATH/7-81,CYB5_BRAOB/7-81),O48618_OLEEU/7-81)),(Q9FDW8_ARATH/7-81,Q9ZNV4_ARATH/4-78)),(((O76336_HELAM/5-79,(CYB5_MUSDO/8-82,CYB5_DROME/8-82)),((Q9VJC0_DROME/43-117,O01816_CAEEL/6-83),((((((((CYB5_RAT/10-84,CYB5_MOUSE/10-84),P70116_MESAU/11-85),((CYB5_BOVIN/10-84,CYB5_PIG/10-84),(CYB5_HUMAN/10-84,CYB5_RABIT/10-84))),CYB5_CHICK/16-90),Q9GV20_CIOSA/9-83),((Q9BT35_HUMAN/22-96,CYM5_HUMAN/22-96),((Q9D8R3_MOUSE/22-96,(Q9D1M6_MOUSE/22-96,Q9CQX2_MOUSE/22-96)),CYM5_RAT/22-96))),Q9GV21_POLMI/13-87),Q93315_CAEEL/6-80))),(CYB5_MORAP/6-80,CYB5_RHIST/5-79)))),(O22704_ARATH/48-121,(((SUOX_DROME/110-186,Q9XTQ8_CAEEL/81-157),(SUOX_HUMAN/27-104,SUOX_RAT/27-104)),SCS7_YEAST/11-90)))),(((Q9UVY3_MORAP/15-89,Q9HEY4_MORIS/15-89),(Q9HEY1_MORAP/15-89,Q9UVV3_MORAP/15-89)),((Q9LEM9_CERPU/99-171,Q9ZNW2_PHYPA/104-176),Q9LEN0_CERPU/62-134))),((((O13510_RHOGR/88-163,(CYB2_YEAST/90-165,Q9Y857_KLULA/89-163)),CYB2_HANAN/82-157),Q9BLW3_LEIMA/595-669),((O96099_DICDI/14-89,Q9Y1W0_DICDI/15-90),(FAD5_MORAP/8-82,((O74875_SCHPO/71-145,YDAA_SCHPO/73-147),(Q9XWF1_CAEEL/56-130,((((Q99P29_MOUSE/22-96,Q9EPZ4_RAT/22-96),Q9UHI9_HUMAN/22-96),((Q9LXD1_ARATH/128-202,Q9FXX6_ARATH/192-266),YMW3_YEAST/124-200)),Q9V8U2_DROME/89-163))))))),(Q20976_CAEEL/11-88,Q17091_ASCSU/35-112)),((((Q9NYX1_HUMAN/19-94,(Q9NRP8_HUMAN/19-94,O60427_HUMAN/19-94)),Q9EPV4_RAT/21-97),((((O95864_HUMAN/20-95,Q9Z122_RAT/20-95),(Q9JJE7_MOUSE/26-101,Q9Y5Q0_HUMAN/22-97)),(Q9DEX6_CYPCA/20-95,FADS_BRARE/20-95)),Q98SW7_ONCMY/30-105)),(((Q9SAU5_BOROF/8-81,O04353_BOROF/8-81),((((Q9ZRP8_BRANA/9-82,Q9ZRP7_ARATH/9-82),Q9FR82_BOROF/7-80),Q43469_HELAN/18-91),Q9ZTY9_RICCO/7-80)),Q9ZTU8_WHEAT/29-102))),((O13378_MUCRO/342-419,((((Q9UVW5_MORAP/343-420,O94214_MORAP/343-420),O94215_MORAP/344-421),O94747_MORAP/343-420),Q9C135_9ZYGO/215-292)),(((ACO1_SCHPO/360-433,((P79077_CRYCU/374-449,P79078_CRYCU/357-432),(ACO1_AJECA/351-427,Q12619_AJECA/351-427))),(((ACO1_YEAST/411-487,Q9HFB2_SACKL/381-457),P79049_PICAN/351-427),O94036_CANAL/389-464)),O80331_CYAME/380-457))),Q9HDG8_MUCRO/21-95),((((Q9VJI2_DROME/26-100,CYB5R_DROME/26-100),CYB5R_DROVI/26-100),Q9VJI1_DROME/29-105),(Q9N9B5_LEIMA/12-82,P71799_MYCTU/2-89))),((((O93787_RHIOL/303-384,((CHS4_NEUCR/372-457,CHS4_MAGGR/407-492),CHS5_USTMA/402-484)),CHS1_CRYNV/246-329),(CHS6_USTMA/269-361,(O94192_PARBR/934-1022,((O93809_MAGGR/1079-1178,Q9P8W4_BLUGR/1082-1181),(O13281_EMENI/1094-1192,P97995_ASPFU/734-832))))),((O88473_MOUSE/1210-1284,(O15093_HUMAN/17-91,O95714_HUMAN/1209-1283)),Q9VR91_DROME/1290-1364))),(Q9V4L7_DROME/2-77,Q9XVS0_CAEEL/4-78)),(Q9XTB7_CAEEL/3-134,Q9GYB0_LEIMA/4-90)),((CHS6_USTMA/139-268,O94192_PARBR/806-933),(((O13281_EMENI/960-1093,P97995_ASPFU/600-733),Q9P8W4_BLUGR/948-1081),O93809_MAGGR/945-1078))),(O26575_METTH/3-75,(Q9AMN3_CLOAB/61-134,Q97TF9_CLOAB/65-138))),(((((Q9FVZ7_ORYSA/73-170,MSBP1_ARATH/74-171),SBP2_ARATH/70-167),Q9FVZ9_ORYSA/120-217),((YL81_SCHPO/42-145,DAP1_YEAST/46-145),((Q9VJY5_DROME/72-171,Q9VXM4_DROME/82-181),(((Q9N0T7_BOVIN/62-161,PGRC1_MOUSE/71-170),Q98TJ7_PLAFE/38-109),Q9TY05_CAEEL/64-161)))),SBP3_ARATH/2-99)),(Q9W376_DROME/63-162,Q9XXA7_CAEEL/100-197)),SPUF_MOUSE/45-143,SPUF_HUMAN/46-144);
((((((((((((((((((((((((((NIA1_ARATH/547-620:0.04095,(NIA1_BRANA/541-614:0.00000,NIA2_BRANA/541-614:0.01356):0.01458):0.01491,(NIA1_PHAVU/517-590:0.08098,(((NIA1_SOYBN/515-588:0.02726,Q9SYR0_SOYBN/519-592:0.00000):0.00000,O48930_SOYBN/505-578:0.00000):0.00000,NIA2_SOYBN/519-592:0.00000):0.04414):0.05580):0.01430,NIA2_ARATH/544-617:0.02910):0.01589,(((NIA_SPIOL/553-626:0.07015,((Q43042_PETHY/543-616:0.00000,NIA_PETHY/537-610:0.00000):0.01379,(((NIA2_TOBAC/533-606:0.00000,Q41201_NICPL/9-74:0.01525):0.01079,NIA1_TOBAC/533-606:0.03051):0.01386,((O24390_SOLTU/538-611:0.00000,O04926_SOLTU/538-611:0.00000):0.00000,NIA_LYCES/538-611:0.00000):0.04250):0.02856):0.00000):0.04132,Q9FUC2_RICCO/536-609:0.06894):0.00000,(NIA2_PHAVU/515-588:0.05468,(NIA_LOTJA/523-596:0.04182,NIA_CUCMA/545-618:0.03039):0.00000):0.02734):0.01129):0.01787,(NIA_BETVE/530-603:0.03423,((P92922_AGRGI/125-198:0.00000,P92920_AGRGI/257-330:0.00000):0.04901,P92921_AGRGI/115-188:0.05508):0.02762):0.01287):0.06056,NIA_CICIN/536-609:0.04007):0.04935,((((Q41613_TRIMO/5-78:0.00000,Q39992_HORSP/5-78:0.00000):0.00000,(NIA2_HORVU/537-610:0.00000,NIA1_HORVU/540-613:0.00000):0.00000):0.01343,NIA7_HORVU/517-590:0.11819):0.01716,(((((Q9XGW5_MAIZE/540-613:0.00000,Q43265_MAIZE/131-204:0.00000):0.04250,NIA3_MAIZE/522-595:0.04228):0.00711,NIA1_ORYSA/543-616:0.00798):0.01234,Q38791_9POAL/2-75:0.00000):0.00000,((Q39966_9POAL/5-78:0.01390,((Q39993_9POAL/5-78:0.00000,Q39984_9POAL/5-78:0.00000):0.00000,(Q39976_9POAL/5-78:0.00000,Q39971_HORCH/5-78:0.00000):0.00000):0.00000):0.01368,Q41318_SECCE/5-78:0.02866):0.02836):0.01205):0.08722):0.23806,(((NIA_VOLCA/499-572:0.06179,Q9SDY3_CHLRE/510-583:0.08641):0.16376,((NIA_CHLVU/218-291:0.01384,Q42497_CHLVU/504-577:0.00000):0.14539,(Q9UVH6_HEBCY/545-618:0.28280,(((Q9P942_HANAN/515-588:0.23101,NIA_USTMA/516-592:0.36186):0.07152,NIA_PICAN/504-578:0.33916):0.04850,(((((Q00284_ASPPA/516-589:0.05553,Q12561_ASPOR/516-589:0.00000):0.11861,Q01696_PENCH/513-586:0.11095):0.03286,NIA_EMENI/514-587:0.06638):0.05996,(NIA_LEPMC/538-611:0.12935,O00101_PHANO/537-610:0.10892):0.06482):0.13540,(((Q92237_GIBFU/550-623:0.00000,NIA_FUSOX/548-621:0.00000):0.08560,O13486_METAN/539-612:0.20128):0.01848,(NIA_BEABA/537-610:0.19044,(Q00303_BOTCI/540-612:0.19767,NIA_NEUCR/619-692:0.04325):0.07751):0.03078):0.05427):0.20067):0.10562):0.28944):0.05350):0.08223,NIA_PHYIN/539-612:0.50011):0.04234):0.22220,CYB5_ECTVA/9-87:0.70725):0.00000,Q9VQY5_DROME/10-118:1.26467):0.13627,((((((Q9M5B0_PETHY/6-80:0.01321,Q9ZSP7_PETHY/6-80:0.00000):0.30720,Q9VUZ3_DROME/4-80:0.43402):0.05060,(CYB5_YEAST/4-78:0.50920,CYB51_SCHPO/5-79:0.35185):0.16397):0.10581,CYB52_SCHPO/5-79:0.44145):0.00922,((((CYB5_ORYSA/8-82:0.13297,(CYB5_CUSRE/6-80:0.15493,(((CYB5_BOROF/4-78:0.04534,CYB5S_TOBAC/7-81:0.07049):0.02909,(Q9ZWT2_ARATH/7-81:0.14540,O24651_OLEEU/4-78:0.04258):0.03787):0.07946,CYB52_ARATH/7-81:0.13158):0.01512):0.06084):0.10696,((CYB51_ARATH/7-81:0.01394,CYB5_BRAOB/7-81:0.04109):0.08569,O48618_OLEEU/7-81:0.07156):0.10330):0.11060,(Q9FDW8_ARATH/7-81:0.16308,Q9ZNV4_ARATH/4-78:0.32811):0.11988):0.11475,(((O76336_HELAM/5-79:0.41429,(CYB5_MUSDO/8-82:0.09394,CYB5_DROME/8-82:0.09113):0.05668):0.13011,((Q9VJC0_DROME/43-117:0.41819,O01816_CAEEL/6-83:0.22927):0.16681,((((((((CYB5_RAT/10-84:0.00000,CYB5_MOUSE/10-84:0.00000):0.01333,P70116_MESAU/11-85:0.00000):0.03735,((CYB5_BOVIN/10-84:0.01321,CYB5_PIG/10-84:0.00000):0.00000,(CYB5_HUMAN/10-84:0.01328,CYB5_RABIT/10-84:0.01351):0.01334):0.00564):0.06264,CYB5_CHICK/16-90:0.08876):0.19755,Q9GV20_CIOSA/9-83:0.00000):0.11420,((Q9BT35_HUMAN/22-96:0.00000,CYM5_HUMAN/22-96:0.00000):0.05839,((Q9D8R3_MOUSE/22-96:0.01356,(Q9D1M6_MOUSE/22-96:0.00000,Q9CQX2_MOUSE/22-96:0.00000):0.00000):0.00000,CYM5_RAT/22-96:0.01329):0.09406):0.20560):0.06425,Q9GV21_POLMI/13-87:0.15881):0.06997,Q93315_CAEEL/6-80:0.24347):0.02042):0.06267):0.03734,(CYB5_MORAP/6-80:0.39267,CYB5_RHIST/5-79:0.21626):0.11402):0.08063):0.02779):0.07321,(O22704_ARATH/48-121:0.51454,(((SUOX_DROME/110-186:0.25064,Q9XTQ8_CAEEL/81-157:0.23575):0.18301,(SUOX_HUMAN/27-104:0.08386,SUOX_RAT/27-104:0.08708):0.42797):0.68209,SCS7_YEAST/11-90:0.41076):0.13534):0.17149):0.08665):0.05148,(((Q9UVY3_MORAP/15-89:0.00000,Q9HEY4_MORIS/15-89:0.00000):0.00000,(Q9HEY1_MORAP/15-89:0.00000,Q9UVV3_MORAP/15-89:0.00000):0.00000):0.67151,((Q9LEM9_CERPU/99-171:0.19409,Q9ZNW2_PHYPA/104-176:0.26350):0.10018,Q9LEN0_CERPU/62-134:0.17043):0.27028):0.30569):0.04506,((((O13510_RHOGR/88-163:0.63075,(CYB2_YEAST/90-165:0.17573,Q9Y857_KLULA/89-163:0.29513):0.10189):0.09290,CYB2_HANAN/82-157:0.21750):0.14146,Q9BLW3_LEIMA/595-669:0.61913):0.36298,((O96099_DICDI/14-89:0.19852,Q9Y1W0_DICDI/15-90:0.17910):0.32523,(FAD5_MORAP/8-82:0.30885,((O74875_SCHPO/71-145:0.28744,YDAA_SCHPO/73-147:0.11771):0.33230,(Q9XWF1_CAEEL/56-130:0.32484,((((Q99P29_MOUSE/22-96:0.01360,Q9EPZ4_RAT/22-96:0.00000):0.04233,Q9UHI9_HUMAN/22-96:0.01277):0.24033,((Q9LXD1_ARATH/128-202:0.00000,Q9FXX6_ARATH/192-266:0.00000):0.27913,YMW3_YEAST/124-200:0.86504):0.25934):0.11353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