EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00112 - Peptidase_C1)
Papain family cysteine protease
(Pfam reference: accession no. PF00112)
(Interpro reference: accession no. IPR000668)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
162 sequences @ 367 aa
(ave. pairwise identity: 0.41)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 61.89)
nucleotides
(available for above)
154 sequences @ 1101 bp
(ave. pairwise identity: 0.48)
New Hampshire format
(total tree length: 50.07)
amino acids, restricted set
(corresp. to available nt seqs)
154 sequences @ 367 aa
(ave. pairwise identity: 0.40)
New Hampshire format
(total tree length: 59.59)