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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00097 phylogeny
for amino acid alignment


 
((((PEX2_CRIGR/243-282,((ICP0_EHV1B/8-46,(ICP0_BHV1J/13-51,(ICP0_VZVD/19-57,(ICP0_PRVIF/46-84,ICP0_HHV11/116-156)))),(((YKZ7_YEAST/179-223,((ZEF2_IRV6/85-132,CBL_HUMAN/381-419),((RAD5_YEAST/914-960,RAD8_SCHPO/877-922),YEU6_YEAST/206-249))),((Q21530_CAEEL/16-66,((Q9VB61_DROME/23-78,Q9W3I6_DROME/34-88),Q9CPS3_MOUSE/14-68)),(((VIE1_BHV4D/132-176,Q997C2_9POXV/23-68),(((O40920_HHV8/9-53,Q20977_CAEEL/52-95),O41933_MHV68/8-51),(((Q9P2E8_HUMAN/205-250,Q9V972_DROME/167-212),(((((Q93227_CAEEL/13-67,Q18997_CAEEL/25-71),MARH2_MOUSE/64-109),(Q9NIN1_9APIC/232-291,Q9DBD2_MOUSE/76-122)),Q9H992_HUMAN/552-607),(Q9XWI0_CAEEL/194-247,((O49494_ARATH/68-114,SSM4_YEAST/39-93),O60103_SCHPO/8-54)))),((Q9FWY0_ARATH/20-65,(O64633_ARATH/74-119,((Q9FYM9_ARATH/249-296,Q9SQT6_ARATH/218-264),Q9FIL2_ARATH/81-129))),Q9W3Y8_DROME/91-137)))),((Q20802_CAEEL/160-209,Q39623_CHLRE/12-58),Q9VQI2_DROME/392-442)))),((GOLI_DROME/303-343,(((TRI27_HUMAN/16-56,(A33_PLEWA/162-201,(((RNG1_HUMAN/19-58,((BRCA1_HUMAN/24-64,((((SUZ2_DROME/35-73,PSC_DROME/265-303),BMI1_HUMAN/18-56),YNN1_CAEEL/8-45),RAD18_YEAST/28-65)),TRAF2_MOUSE/34-72)),TRI30_MOUSE/15-58),RO52_HUMAN/16-54))),(RAG1_CHICK/289-327,ESAG8_TRYBB/10-45)),(PML_HUMAN/57-91,NHL1_CAEEL/43-83))),(RFP1_CAEEL/782-820,RAD16_YEAST/537-580))))),VCG3_NPVAC/8-62),PE38_NPVOP/39-91),PE38_NPVAC/86-138,VIE2_NPVOP/207-254);
((((PEX2_CRIGR/243-282:1.08369,((ICP0_EHV1B/8-46:0.21018,(ICP0_BHV1J/13-51:0.30581,(ICP0_VZVD/19-57:0.56842,(ICP0_PRVIF/46-84:0.20557,ICP0_HHV11/116-156:0.72276):0.19831):0.24904):0.25994):0.11121,(((YKZ7_YEAST/179-223:1.53720,((ZEF2_IRV6/85-132:0.92982,CBL_HUMAN/381-419:0.45873):0.45044,((RAD5_YEAST/914-960:0.23173,RAD8_SCHPO/877-922:1.16968):0.52549,YEU6_YEAST/206-249:0.77432):0.00000):0.27478):0.12241,((Q21530_CAEEL/16-66:0.81719,((Q9VB61_DROME/23-78:0.32731,Q9W3I6_DROME/34-88:0.31136):0.16358,Q9CPS3_MOUSE/14-68:0.12347):0.11748):0.28740,(((VIE1_BHV4D/132-176:0.57653,Q997C2_9POXV/23-68:0.53464):0.19869,(((O40920_HHV8/9-53:0.63073,Q20977_CAEEL/52-95:0.53243):0.08502,O41933_MHV68/8-51:0.59003):0.15042,(((Q9P2E8_HUMAN/205-250:0.71962,Q9V972_DROME/167-212:0.27762):0.02497,(((((Q93227_CAEEL/13-67:0.27353,Q18997_CAEEL/25-71:0.55382):0.18311,MARH2_MOUSE/64-109:0.34474):0.23454,(Q9NIN1_9APIC/232-291:0.49811,Q9DBD2_MOUSE/76-122:0.21963):0.19392):0.06452,Q9H992_HUMAN/552-607:0.32930):0.07102,(Q9XWI0_CAEEL/194-247:0.44536,((O49494_ARATH/68-114:0.35936,SSM4_YEAST/39-93:0.53114):0.12662,O60103_SCHPO/8-54:0.14608):0.32533):0.04087):0.22011):0.08202,((Q9FWY0_ARATH/20-65:0.36055,(O64633_ARATH/74-119:0.58184,((Q9FYM9_ARATH/249-296:0.27661,Q9SQT6_ARATH/218-264:0.33160):0.28243,Q9FIL2_ARATH/81-129:0.33600):0.17647):0.28471):0.33145,Q9W3Y8_DROME/91-137:0.81173):0.10464):0.08826):0.04254):0.13281,((Q20802_CAEEL/160-209:1.27529,Q39623_CHLRE/12-58:0.54641):0.19017,Q9VQI2_DROME/392-442:0.37855):0.32762):0.17392):0.72378):0.01429,((GOLI_DROME/303-343:0.84323,(((TRI27_HUMAN/16-56:0.63792,(A33_PLEWA/162-201:0.34001,(((RNG1_HUMAN/19-58:0.65472,((BRCA1_HUMAN/24-64:0.43816,((((SUZ2_DROME/35-73:0.60019,PSC_DROME/265-303:0.28796):0.16656,BMI1_HUMAN/18-56:0.27316):0.67097,YNN1_CAEEL/8-45:0.06797):0.43321,RAD18_YEAST/28-65:0.36700):0.18654):0.00000,TRAF2_MOUSE/34-72:0.92395):0.18839):0.11879,TRI30_MOUSE/15-58:0.31593):0.09541,RO52_HUMAN/16-54:0.42246):0.28384):0.00000):0.17856,(RAG1_CHICK/289-327:0.89809,ESAG8_TRYBB/10-45:0.42494):0.51419):0.17812,(PML_HUMAN/57-91:0.94110,NHL1_CAEEL/43-83:0.01081):0.54980):0.14312):0.13130,(RFP1_CAEEL/782-820:0.73945,RAD16_YEAST/537-580:0.65076):0.32721):0.00000):0.37987):0.31803):0.39610,VCG3_NPVAC/8-62:1.04979):0.32580,PE38_NPVOP/39-91:0.17767):0.17734,PE38_NPVAC/86-138:0.21650,VIE2_NPVOP/207-254:1.19210);