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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00057 - Ldl_recept_a)
Low-density lipoprotein receptor domain class A
(Pfam reference: accession no. PF00057)
(Interpro reference: accession no. IPR002172)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
53 sequences @ 62 aa
(ave. pairwise identity: 0.45)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 26.01)
nucleotides
(available for above)
50 sequences @ 186 bp
(ave. pairwise identity: 0.50)
New Hampshire format
(total tree length: 17.63)
amino acids, restricted set
(corresp. to available nt seqs)
50 sequences @ 62 aa
(ave. pairwise identity: 0.45)
New Hampshire format
(total tree length: 23.94)