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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00047 phylogeny
for restricted amino acid alignment


 
(((((((TIE1_MOUSE/363-426,(((((((OX2G_MOUSE/153-216,(FCGR1_HUMAN/36-87,PTP2_CAEEL/62-132)),((((MUC_CHICK/230-298,EPC_MOUSE/219-287),HVC1_HETFR/160-223),(NRG_DROME/535-596,CD22_HUMAN/346-398)),((I1BP_CWPXB/235-311,CD22_HUMAN/522-573),((DTC_RAT/93-162,GCBM_MOUSE/248-315),((B2MG_BRAAR/38-102,O46819_TRISC/205-269),((2DMB_HUMAN/128-194,(((HB21_HUMAN/142-207,(Q31312_APHCE/113-178,Q31340_AGEPH/114-179)),(Q31377_CYPCA/123-188,Q31463_MORSA/126-191)),((1A01_GORGO/220-285,Q31499_ONCMY/211-278),Q31362_BRARE/125-190))),2DMA_HUMAN/140-204)))))),(((MYPC2_CHICK/1052-1112,(PECA1_HUMAN/340-388,OPCM_RAT/237-298)),((LAR_DROME/50-113,((NCAM1_BOVIN/321-396,((GUNC_CELFI/934-989,VCAM1_HUMAN/239-293),((ICAM3_HUMAN/329-377,IL6RA_MOUSE/40-94),PGDR_HUMAN/47-102))),((CNTFR_HUMAN/39-91,L1CAM_HUMAN/532-593),(TIE1_MOUSE/137-195,KFMS_FELCA/217-280)))),((FGFR1_CHICK/47-102,MYLK_CHICK/1098-1158),L1CAM_HUMAN/257-314))),(NRG_DROME/261-319,HEMO_HYACE/245-307))),((CD4_MOUSE/35-114,PVR_CERAE/259-314),((CEAM1_HUMAN/341-398,(SEM3E_MOUSE/595-656,P79988_CHICK/35-116)),(FCGR1_MOUSE/214-271,(CD8A_MOUSE/46-131,FLT3_MOUSE/266-333))))),((CD33_HUMAN/156-214,NCAM1_BOVIN/34-98),((((Q09165_CAEEL/1219-1266,Q09165_CAEEL/1832-1890),TRKC_HUMAN/224-286),IL1S_HUMAN/251-328),(O57349_CHICK/131-195,Q09165_CAEEL/320-376)))),(CD48_MOUSE/144-195,(((KIT_HUMAN/226-292,TVB4_MOUSE/38-115),CTLA4_MOUSE/51-131),(V055_FOWPV/41-108,OX2G_RAT/44-123)))),(((O57349_CHICK/32-101,BT1A1_BOVIN/43-126),SCN1B_HUMAN/33-123),PTPRM_HUMAN/199-262))),KV5H_MOUSE/38-112),((O60667_HUMAN/30-106,PIGR_HUMAN/33-112),PIGR_RABIT/362-440)),THY1_HUMAN/31-106),KI3L1_HUMAN/42-97),KI2S5_HUMAN/42-102),KI3L1_HUMAN/237-295,KI2S5_HUMAN/142-200);
(((((((TIE1_MOUSE/363-426:1.74209,(((((((OX2G_MOUSE/153-216:1.18563,(FCGR1_HUMAN/36-87:0.62167,PTP2_CAEEL/62-132:1.35010):0.35741):0.18597,((((MUC_CHICK/230-298:1.09235,EPC_MOUSE/219-287:0.62411):0.49119,HVC1_HETFR/160-223:0.89901):0.46981,(NRG_DROME/535-596:0.69085,CD22_HUMAN/346-398:0.85026):0.26699):0.01890,((I1BP_CWPXB/235-311:1.15285,CD22_HUMAN/522-573:0.53554):0.15415,((DTC_RAT/93-162:1.48992,GCBM_MOUSE/248-315:0.92517):0.13647,((B2MG_BRAAR/38-102:0.48509,O46819_TRISC/205-269:1.26842):0.18384,((2DMB_HUMAN/128-194:0.32179,(((HB21_HUMAN/142-207:0.21967,(Q31312_APHCE/113-178:0.12423,Q31340_AGEPH/114-179:0.14708):0.42289):0.26003,(Q31377_CYPCA/123-188:0.22556,Q31463_MORSA/126-191:0.08040):0.38084):0.15722,((1A01_GORGO/220-285:0.64349,Q31499_ONCMY/211-278:0.74448):0.43565,Q31362_BRARE/125-190:0.66564):0.11347):0.24808):0.36269,2DMA_HUMAN/140-204:0.93178):0.14145):0.18889):0.45100):0.01670):0.13309):0.06390,(((MYPC2_CHICK/1052-1112:1.03986,(PECA1_HUMAN/340-388:0.43868,OPCM_RAT/237-298:0.67835):0.50687):0.07998,((LAR_DROME/50-113:0.98442,((NCAM1_BOVIN/321-396:0.47151,((GUNC_CELFI/934-989:1.18655,VCAM1_HUMAN/239-293:0.80826):0.00000,((ICAM3_HUMAN/329-377:0.97721,IL6RA_MOUSE/40-94:0.72379):0.20528,PGDR_HUMAN/47-102:1.36660):0.19606):0.43496):0.14594,((CNTFR_HUMAN/39-91:1.08099,L1CAM_HUMAN/532-593:0.62559):0.27273,(TIE1_MOUSE/137-195:1.11089,KFMS_FELCA/217-280:0.54175):0.33752):0.17058):0.19302):0.12000,((FGFR1_CHICK/47-102:1.00819,MYLK_CHICK/1098-1158:0.43696):0.17533,L1CAM_HUMAN/257-314:0.95712):0.36289):0.00000):0.11338,(NRG_DROME/261-319:0.73845,HEMO_HYACE/245-307:0.86483):0.45718):0.05692):0.06597,((CD4_MOUSE/35-114:0.85613,PVR_CERAE/259-314:1.22764):0.39218,((CEAM1_HUMAN/341-398:0.24943,(SEM3E_MOUSE/595-656:1.05523,P79988_CHICK/35-116:1.04712):0.63191):0.17218,(FCGR1_MOUSE/214-271:1.00638,(CD8A_MOUSE/46-131:1.16351,FLT3_MOUSE/266-333:1.56963):0.05006):0.18902):0.08687):0.27621):0.09643,((CD33_HUMAN/156-214:1.13676,NCAM1_BOVIN/34-98:0.70485):0.25491,((((Q09165_CAEEL/1219-1266:0.54714,Q09165_CAEEL/1832-1890:0.38772):0.31454,TRKC_HUMAN/224-286:0.77232):0.26768,IL1S_HUMAN/251-328:1.34183):0.23111,(O57349_CHICK/131-195:0.87241,Q09165_CAEEL/320-376:1.07122):0.35355):0.40224):0.01538):0.25732,(CD48_MOUSE/144-195:1.65887,(((KIT_HUMAN/226-292:0.81070,TVB4_MOUSE/38-115:0.88193):0.30110,CTLA4_MOUSE/51-131:1.58423):0.13426,(V055_FOWPV/41-108:0.74186,OX2G_RAT/44-123:1.04795):0.36304):0.00625):0.19112):0.18355,(((O57349_CHICK/32-101:0.95446,BT1A1_BOVIN/43-126:0.90449):0.28659,SCN1B_HUMAN/33-123:1.54661):0.59560,PTPRM_HUMAN/199-262:1.59725):0.13154):0.20411):0.05187,KV5H_MOUSE/38-112:0.98964):0.29285,((O60667_HUMAN/30-106:0.51675,PIGR_HUMAN/33-112:0.91410):0.49918,PIGR_RABIT/362-440:0.68219):0.34944):0.14476,THY1_HUMAN/31-106:1.37395):0.32806,KI3L1_HUMAN/42-97:0.90111):0.25958,KI2S5_HUMAN/42-102:0.75562):0.61230,KI3L1_HUMAN/237-295:0.02775,KI2S5_HUMAN/142-200:0.09070);