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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00047 phylogeny
for nucleotide alignment


 
((((((((((((((MYPC2_CHICK/1052-1112,(ICAM3_HUMAN/329-377,L1CAM_HUMAN/257-314)),(CNTFR_HUMAN/39-91,L1CAM_HUMAN/532-593)),((CD33_HUMAN/156-214,CD8A_MOUSE/46-131),(O57349_CHICK/131-195,CD48_MOUSE/144-195))),GUNC_CELFI/934-989),((HVC1_HETFR/160-223,((FGFR1_CHICK/47-102,(BT1A1_BOVIN/43-126,(V055_FOWPV/41-108,OX2G_RAT/44-123))),(CTLA4_MOUSE/51-131,(((DTC_RAT/93-162,((2DMB_HUMAN/128-194,(Q31377_CYPCA/123-188,Q31463_MORSA/126-191)),((B2MG_BRAAR/38-102,(O46819_TRISC/205-269,2DMA_HUMAN/140-204)),Q31362_BRARE/125-190))),((HB21_HUMAN/142-207,(Q31312_APHCE/113-178,Q31340_AGEPH/114-179)),1A01_GORGO/220-285)),(Q31499_ONCMY/211-278,((MUC_CHICK/230-298,EPC_MOUSE/219-287),GCBM_MOUSE/248-315)))))),(((((O60667_HUMAN/30-106,PIGR_HUMAN/33-112),(PTP2_CAEEL/62-132,P79988_CHICK/35-116)),TIE1_MOUSE/363-426),PVR_CERAE/259-314),PGDR_HUMAN/47-102))),(PECA1_HUMAN/340-388,((NRG_DROME/261-319,HEMO_HYACE/245-307),(CD22_HUMAN/346-398,SEM3E_MOUSE/595-656)))),((((OX2G_MOUSE/153-216,TRKC_HUMAN/224-286),((Q09165_CAEEL/1219-1266,Q09165_CAEEL/1832-1890),Q09165_CAEEL/320-376)),(IL1S_HUMAN/251-328,I1BP_CWPXB/235-311)),((((FLT3_MOUSE/266-333,KIT_HUMAN/226-292),(KFMS_FELCA/217-280,TIE1_MOUSE/137-195)),(NCAM1_BOVIN/321-396,(IL6RA_MOUSE/40-94,(TVB4_MOUSE/38-115,KV5H_MOUSE/38-112)))),OPCM_RAT/237-298))),((NCAM1_BOVIN/34-98,(NRG_DROME/535-596,(PTPRM_HUMAN/199-262,CD22_HUMAN/522-573))),(VCAM1_HUMAN/239-293,CD4_MOUSE/35-114))),((LAR_DROME/50-113,MYLK_CHICK/1098-1158),(((O57349_CHICK/32-101,SCN1B_HUMAN/33-123),FCGR1_HUMAN/36-87),(CEAM1_HUMAN/341-398,FCGR1_MOUSE/214-271)))),THY1_HUMAN/31-106),PIGR_RABIT/362-440),KI3L1_HUMAN/42-97),KI2S5_HUMAN/42-102),KI3L1_HUMAN/237-295,KI2S5_HUMAN/142-200);
((((((((((((((MYPC2_CHICK/1052-1112:0.51107,(ICAM3_HUMAN/329-377:0.66786,L1CAM_HUMAN/257-314:0.36790):0.11206):0.06179,(CNTFR_HUMAN/39-91:0.61696,L1CAM_HUMAN/532-593:0.27335):0.14457):0.09235,((CD33_HUMAN/156-214:0.49047,CD8A_MOUSE/46-131:0.73831):0.15343,(O57349_CHICK/131-195:0.63750,CD48_MOUSE/144-195:0.85877):0.18808):0.07288):0.04879,GUNC_CELFI/934-989:0.82286):0.06401,((HVC1_HETFR/160-223:0.69626,((FGFR1_CHICK/47-102:0.55260,(BT1A1_BOVIN/43-126:0.60522,(V055_FOWPV/41-108:0.76396,OX2G_RAT/44-123:0.41097):0.30636):0.13670):0.09423,(CTLA4_MOUSE/51-131:0.72700,(((DTC_RAT/93-162:0.77204,((2DMB_HUMAN/128-194:0.36766,(Q31377_CYPCA/123-188:0.11993,Q31463_MORSA/126-191:0.17391):0.28752):0.00262,((B2MG_BRAAR/38-102:0.44855,(O46819_TRISC/205-269:0.77520,2DMA_HUMAN/140-204:0.34442):0.27165):0.13964,Q31362_BRARE/125-190:0.39952):0.15841):0.07512):0.07609,((HB21_HUMAN/142-207:0.21645,(Q31312_APHCE/113-178:0.04459,Q31340_AGEPH/114-179:0.08700):0.15333):0.13191,1A01_GORGO/220-285:0.47356):0.05682):0.11637,(Q31499_ONCMY/211-278:0.49631,((MUC_CHICK/230-298:0.36392,EPC_MOUSE/219-287:0.53792):0.23171,GCBM_MOUSE/248-315:0.56218):0.08905):0.14375):0.11334):0.10287):0.05778):0.06798,(((((O60667_HUMAN/30-106:0.46681,PIGR_HUMAN/33-112:0.51199):0.20832,(PTP2_CAEEL/62-132:0.80557,P79988_CHICK/35-116:0.50000):0.25619):0.08356,TIE1_MOUSE/363-426:0.74726):0.13485,PVR_CERAE/259-314:0.61834):0.22571,PGDR_HUMAN/47-102:0.76824):0.14184):0.07365):0.11729,(PECA1_HUMAN/340-388:0.54274,((NRG_DROME/261-319:0.51284,HEMO_HYACE/245-307:0.56565):0.17994,(CD22_HUMAN/346-398:0.41691,SEM3E_MOUSE/595-656:0.62094):0.19076):0.08137):0.17931):0.16475,((((OX2G_MOUSE/153-216:0.73490,TRKC_HUMAN/224-286:0.45600):0.09097,((Q09165_CAEEL/1219-1266:0.48350,Q09165_CAEEL/1832-1890:0.24411):0.27591,Q09165_CAEEL/320-376:0.62859):0.10643):0.07986,(IL1S_HUMAN/251-328:0.74132,I1BP_CWPXB/235-311:0.29876):0.22274):0.30845,((((FLT3_MOUSE/266-333:0.55978,KIT_HUMAN/226-292:0.70264):0.09257,(KFMS_FELCA/217-280:0.28253,TIE1_MOUSE/137-195:0.86486):0.23897):0.19021,(NCAM1_BOVIN/321-396:0.50900,(IL6RA_MOUSE/40-94:0.53533,(TVB4_MOUSE/38-115:0.58834,KV5H_MOUSE/38-112:0.53601):0.15558):0.17257):0.17395):0.09880,OPCM_RAT/237-298:0.42418):0.06350):0.05956):0.04823,((NCAM1_BOVIN/34-98:0.50277,(NRG_DROME/535-596:0.40485,(PTPRM_HUMAN/199-262:0.74867,CD22_HUMAN/522-573:0.40019):0.03979):0.09936):0.07611,(VCAM1_HUMAN/239-293:0.47627,CD4_MOUSE/35-114:0.59649):0.21980):0.09504):0.09961,((LAR_DROME/50-113:0.53413,MYLK_CHICK/1098-1158:0.47277):0.30644,(((O57349_CHICK/32-101:0.54173,SCN1B_HUMAN/33-123:0.43597):0.17359,FCGR1_HUMAN/36-87:0.57320):0.18756,(CEAM1_HUMAN/341-398:0.29520,FCGR1_MOUSE/214-271:0.76845):0.11593):0.05064):0.07332):0.21814,THY1_HUMAN/31-106:0.76718):0.08171,PIGR_RABIT/362-440:0.66090):0.06110,KI3L1_HUMAN/42-97:0.38814):0.11999,KI2S5_HUMAN/42-102:0.40266):0.36808,KI3L1_HUMAN/237-295:0.02885,KI2S5_HUMAN/142-200:0.04457);