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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00041 phylogeny
for amino acid alignment


 
((FINC_BOVIN/1417-1499,((PTPB_HUMAN/22-103,(FINC_BOVIN/577-660,((TENA_CHICK/1045-1124,TENA_HUMAN/1255-1335),(TENA_CHICK/1227-1306,(TENA_HUMAN/1529-1608,TENA_CHICK/1136-1215))))),((((PTP1_DROME/123-205,PTP1_DROME/583-661),PTP1_DROME/217-301),((PTPB_HUMAN/1355-1434,(PTP1_DROME/405-485,PTP1_DROME/312-394)),((PTP1_DROME/864-944,PTPB_HUMAN/1261-1344),(PTPB_HUMAN/112-192,(PTPB_HUMAN/467-543,(((PTPB_HUMAN/1085-1162,PTPB_HUMAN/1173-1250),(PTPB_HUMAN/995-1074,(PTPB_HUMAN/554-632,(PTPB_HUMAN/643-725,PTPB_HUMAN/731-808)))),PTPB_HUMAN/907-984)))))),(((((MYLK_CHICK/1318-1403,CNTN2_CHICK/602-692),NRCAM_CHICK/623-709),((MPSF_CHICK/699-785,((MPSF_CHICK/371-457,MPSF_CHICK/499-585),MPSF_CHICK/801-887)),(MYPC2_CHICK/923-1008,MYPC2_CHICK/630-716))),(((KALM_CHICK/177-269,((EPA1_HUMAN/333-431,EPA2_HUMAN/329-420),(EPB2_CHICK/326-422,EPA3_CHICK/325-421))),((CHI1_BACCI/465-542,((APU_THETY/928-1009,PHB_ALCFA/344-418),(GUNB_CELFI/651-733,(APU_THETY/1165-1248,CHIT_STRLI/142-219)))),CHIX_STROI/169-240)),(LAR_DROME/322-404,(MPSF_CHICK/600-684,LAR_DROME/515-598)))),((((TIE2_HUMAN/543-626,7LES_DROVI/1917-1997),(((PTPRK_MOUSE/290-376,TIE1_HUMAN/446-533),TIE2_HUMAN/444-529),IL7RA_HUMAN/129-221)),((NCAM1_BOVIN/610-691,NCAM1_BOVIN/509-597),(FAS2_SCHAM/642-735,TIE2_HUMAN/639-724))),((((PTPZ_HUMAN/312-401,EPA2_HUMAN/436-519),((NGCA_CHICK/700-794,(NRG_DROME/717-799,NRCAM_CHICK/726-810)),LAR_DROME/417-503)),(((ITB4_HUMAN/1528-1612,(ITB4_HUMAN/1220-1310,ITB4_HUMAN/1641-1728)),TIE1_HUMAN/644-729),((LAR_DROME/909-995,NRCAM_CHICK/928-1014),((FAS2_SCHAM/530-616,PTP6_DROME/332-425),((EPB2_CHICK/437-521,EPA4_MOUSE/441-525),(PTP1_DROME/958-1044,PTP6_DROME/236-321)))))),(((NRG_DROME/917-1007,LAR_DROME/709-800),PTP9_DROME/171-259),(((NRG_DROME/815-905,L1CAM_HUMAN/812-907),((CNTN2_CHICK/807-896,CNTN1_CHICK/799-884),TIE1_HUMAN/545-632)),(7LES_DROME/1799-1891,(ITB4_HUMAN/1127-1208,UFO_HUMAN/327-411)))))))))),(((TENA_CHICK/774-853,TENA_CHICK/1406-1483),FINC_BOVIN/1782-1861),(TENA_CHICK/1494-1571,KALM_CHICK/543-641)),(((TENA_CHICK/682-767,(FINC_BOVIN/1236-1316,FINC_BOVIN/1601-1680)),FINC_BOVIN/875-955),(((TENA_CHICK/956-1033,(TENA_CHICK/593-671,TENA_CHICK/864-945)),((FINC_BOVIN/1693-1771,(FINC_BOVIN/1142-1225,FINC_BOVIN/1511-1590)),(FINC_RAT/1266-1346,(FINC_BOVIN/1327-1406,TENA_CHICK/1317-1395)))),(FINC_BOVIN/780-858,FINC_BOVIN/689-768))));
((FINC_BOVIN/1417-1499:0.70742,((PTPB_HUMAN/22-103:1.91062,(FINC_BOVIN/577-660:0.87721,((TENA_CHICK/1045-1124:0.30381,TENA_HUMAN/1255-1335:0.44695):0.33164,(TENA_CHICK/1227-1306:0.42602,(TENA_HUMAN/1529-1608:0.67886,TENA_CHICK/1136-1215:0.49539):0.23310):0.00000):0.64133):0.02016):0.22941,((((PTP1_DROME/123-205:0.95927,PTP1_DROME/583-661:0.60709):0.12521,PTP1_DROME/217-301:1.46710):0.01510,((PTPB_HUMAN/1355-1434:1.05764,(PTP1_DROME/405-485:0.67018,PTP1_DROME/312-394:1.22950):0.26742):0.17880,((PTP1_DROME/864-944:0.73156,PTPB_HUMAN/1261-1344:0.98825):0.36561,(PTPB_HUMAN/112-192:0.70314,(PTPB_HUMAN/467-543:0.91099,(((PTPB_HUMAN/1085-1162:0.69003,PTPB_HUMAN/1173-1250:0.38306):0.43911,(PTPB_HUMAN/995-1074:0.73500,(PTPB_HUMAN/554-632:0.61944,(PTPB_HUMAN/643-725:0.36879,PTPB_HUMAN/731-808:0.35562):0.38127):0.06660):0.12597):0.03596,PTPB_HUMAN/907-984:0.74486):0.15782):0.00000):0.30762):0.02996):0.38291):0.38591,(((((MYLK_CHICK/1318-1403:0.77006,CNTN2_CHICK/602-692:0.76899):0.23571,NRCAM_CHICK/623-709:1.01916):0.10015,((MPSF_CHICK/699-785:0.66212,((MPSF_CHICK/371-457:0.52338,MPSF_CHICK/499-585:0.80501):0.20335,MPSF_CHICK/801-887:0.56346):0.28400):0.06023,(MYPC2_CHICK/923-1008:0.83533,MYPC2_CHICK/630-716:0.65739):0.20651):0.16419):0.11876,(((KALM_CHICK/177-269:1.39947,((EPA1_HUMAN/333-431:0.47649,EPA2_HUMAN/329-420:0.52580):0.29324,(EPB2_CHICK/326-422:0.32230,EPA3_CHICK/325-421:0.21153):0.36960):0.30290):0.37921,((CHI1_BACCI/465-542:0.36323,((APU_THETY/928-1009:0.98221,PHB_ALCFA/344-418:0.29325):0.27134,(GUNB_CELFI/651-733:0.65469,(APU_THETY/1165-1248:0.97349,CHIT_STRLI/142-219:0.29157):0.05050):0.00000):0.10224):0.14518,CHIX_STROI/169-240:0.38613):0.32888):0.09435,(LAR_DROME/322-404:0.81354,(MPSF_CHICK/600-684:0.73892,LAR_DROME/515-598:0.75919):0.10194):0.08054):0.17960):0.21322,((((TIE2_HUMAN/543-626:0.91103,7LES_DROVI/1917-1997:1.28310):0.35525,(((PTPRK_MOUSE/290-376:0.74870,TIE1_HUMAN/446-533:0.80957):0.27677,TIE2_HUMAN/444-529:0.76340):0.22565,IL7RA_HUMAN/129-221:1.12986):0.10472):0.16262,((NCAM1_BOVIN/610-691:1.21099,NCAM1_BOVIN/509-597:0.87766):0.17974,(FAS2_SCHAM/642-735:1.03454,TIE2_HUMAN/639-724:0.70883):0.26721):0.21117):0.02626,((((PTPZ_HUMAN/312-401:1.02561,EPA2_HUMAN/436-519:0.69805):0.34166,((NGCA_CHICK/700-794:0.61885,(NRG_DROME/717-799:0.70234,NRCAM_CHICK/726-810:0.41615):0.19097):0.56288,LAR_DROME/417-503:0.52348):0.03545):0.10152,(((ITB4_HUMAN/1528-1612:0.58764,(ITB4_HUMAN/1220-1310:0.69844,ITB4_HUMAN/1641-1728:0.47112):0.14497):0.24938,TIE1_HUMAN/644-729:0.79868):0.12590,((LAR_DROME/909-995:0.78382,NRCAM_CHICK/928-1014:0.77496):0.17437,((FAS2_SCHAM/530-616:0.74057,PTP6_DROME/332-425:1.19352):0.37349,((EPB2_CHICK/437-521:0.34687,EPA4_MOUSE/441-525:0.62862):0.23478,(PTP1_DROME/958-1044:0.90367,PTP6_DROME/236-321:1.13897):0.30104):0.05918):0.19772):0.15098):0.20825):0.15793,(((NRG_DROME/917-1007:0.84930,LAR_DROME/709-800:0.59526):0.15876,PTP9_DROME/171-259:0.84770):0.20913,(((NRG_DROME/815-905:0.77951,L1CAM_HUMAN/812-907:0.76835):0.17035,((CNTN2_CHICK/807-896:0.55023,CNTN1_CHICK/799-884:0.48164):0.00000,TIE1_HUMAN/545-632:1.73847):0.15460):0.14698,(7LES_DROME/1799-1891:1.07051,(ITB4_HUMAN/1127-1208:0.47113,UFO_HUMAN/327-411:1.27621):0.40143):0.12002):0.15818):0.12909):0.12390):0.08789):0.18894):0.04728):0.17605):0.08001,(((TENA_CHICK/774-853:0.94048,TENA_CHICK/1406-1483:0.49116):0.25883,FINC_BOVIN/1782-1861:0.46938):0.17480,(TENA_CHICK/1494-1571:0.37997,KALM_CHICK/543-641:1.40403):0.44227):0.00000,(((TENA_CHICK/682-767:1.21696,(FINC_BOVIN/1236-1316:0.74610,FINC_BOVIN/1601-1680:0.46872):0.22236):0.15813,FINC_BOVIN/875-955:0.83032):0.13751,(((TENA_CHICK/956-1033:0.85445,(TENA_CHICK/593-671:0.74569,TENA_CHICK/864-945:0.50255):0.07962):0.11929,((FINC_BOVIN/1693-1771:0.80191,(FINC_BOVIN/1142-1225:0.76653,FINC_BOVIN/1511-1590:0.45507):0.05325):0.16093,(FINC_RAT/1266-1346:0.88263,(FINC_BOVIN/1327-1406:0.38895,TENA_CHICK/1317-1395:0.71239):0.16761):0.16407):0.04120):0.02463,(FINC_BOVIN/780-858:0.20849,FINC_BOVIN/689-768:1.04042):0.38891):0.00000):0.21354);