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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00020 alignment
(35 sequences with 150 bp)


TNR3_HUMAN/83-124 TGTGCCGAGAAT---...TCCTACAACGAGcac......TGGAACTACCTG...ACCATCTGCCAGCTGTGC...CGCCCCTGTGACCCAGTGATGGGCCTCGAGGAGATTGCCCCCTGCACAAGC...AAACGGAAGACC...CAGTGC
TNR7_HUMAN/27-62 TGCCCAGAGAGG---...CACTACTGGGCT.........CAGGGA------...AAGCTGTGC------TGC...CAGATGTGTGAGCCA------GGAACATTCCTCGTGAAGGACTGTGACCAG...CATAGAAAGGCTgctCAGTGT
TNR4_RAT/26-59 TGTGTTAAAGAT---...ACCTACCCCAGT.........---GGTCAC---...AAG---TGC------TGT...CGTGAGTGCCAGCCA------GGCCATGGTATGGTGAGCCGCTGTGATCAC...ACCAGGGACACT...GTATGT
TNR1A_MOUSE/44-81 TGTCCCCAAGGA---...AAGTATGTCCATtct......AAGAACAAT---...TCCATCTGC------TGC...ACCAAGTGCCACAAA------GGAACCTACTTGGTGAGTGACTGTCCGAGCccaGGGCGGGATACA...GTCTGC
TNR1A_HUMAN/44-81 TGTCCCCAAGGA---...AAATATATCCACcct......CAAAATAAT---...TCGATTTGC------TGT...ACCAAGTGCCACAAA------GGAACCTACTTGTACAATGACTGTCCAGGCccgGGGCAGGATACG...GACTGC
TNR4_RAT/62-102 TGTGAGCCTGGC---...TTCTACAATGAGgct......GTCAATTAC---...GACACCTGCAAGCAGTGT...ACACAGTGCAACCACCGAAGTGGAAGTGAACTCAAGCAGAACTGCACACCT...ACTGAGGATACT...GTCTGC
TNR5_MOUSE/26-59 TGCAGTGACAAA---...CAGTACCTCCAC.........---GAT------...GGCCAGTGC------TGT...GATTTGTGCCAGCCA------GGAAGCCGACTGACAAGCCACTGCACAGCT...CTTGAGAAGACC...CAATGC
TNR5_HUMAN/26-59 TGCAGAGAAAAA---...CAGTACCTAATA.........---AAC------...AGTCAGTGC------TGT...TCTTTGTGCCAGCCA------GGACAGAAACTGGTGAGTGACTGCACAGAG...TTCACTGAAACG...GAATGC
TNR1A_RAT/127-166 TGCAAGAAGAAC---...CAATTCCAGCGCtacctgagtGAGACGCAT---...TTCCAGTGTGTGGACTGC...AGCCCCTGCTTCAAT------GGCACC---GTGACAATCCCCTGTAAGGAG...AAACAGAACACC...GTGTGT
TNR1A_HUMAN/127-166 TGCAGGAAGAAC---...CAGTACCGGCATtattggagtGAAAACCTT---...TTCCAGTGCTTCAATTGC...AGCCTCTGCCTCAAT------GGGACCGTGCACCTCTCC---TGCCAGGAG...AAACAGAACACC...GTGTGC
TNR16_RAT/110-147 TGTGCCTATGGC---...TACTACCAGGACgag......GAGACT------...GGCCACTGTGAGGCTTGC...AGCGTGTGCGAGGTG------GGCTCGGGACTCGTGTTCTCCTGCCAGGAC...AAACAGAACACA...GTGTGT
TNR6_MOUSE/44-78 TGCTCAGAAGGA---...TTATATCAAGGA.........---GGC------...CCATTTTGC------TGT...CAACCATGCCAACCT------GGTAAAAAAAAAGTTGAGGACTGCAAAATG...AATGGGGGTACAccaACCTGT
TNR16_RAT/33-65 TGTTCCACAGGC---...CTGTACACCCAC.........AGCGGA------...GAG---TGC------TGC...AAAGCCTGCAACTTG------GGCGAAGGCGTGGCCCAGCCCTGCGGAGCC...AACCAG---ACC...GTGTGT
TNR3_HUMAN/43-80 TGCAGGGACCAGGAAaagGAATACTATGAG.........CCCCAGCAC---...CGCATCTGC------TGC...TCCCGCTGCCCGCCA------GGCACCTATGTCTCAGCTAAATGTAGCCGC...ATCCGGGACACA...GTTTGT
TNR1B_MOUSE/40-76 TGCCAGATCTCACAG...GAATACTATGACagg......AAGGCTCAG---...ATG---TGC------TGT...GCTAAGTGTCCTCCT------GGCCAATATGTGAAACATTTCTGCAACAAG...ACCTCGGACACC...GTGTGT
TNR1B_HUMAN/40-75 TGCCGGCTCAGA---...GAATACTATGACcag......ACAGCTCAG---...ATG---TGC------TGC...AGCAAATGCTCGCCG------GGCCAACATGCAAAAGTCTTCTGTACCAAG...ACCTCGGACACC...GTGTGT
TNR6_MOUSE/81-123 TGCACAGAAGGGAAG...GAGTACATGGAC.........AAGAACCATTATgctGATAAATGCAGAAGATGC...ACACTCTGCGATGAAGAGCATGGTTTAGAAGTGGAAACAAACTGCACCCTG...ACCCAGAATACC...AAGTGC
TNR6_HUMAN/85-127 TGCCAAGAAGGGAAG...GAGTACACAGAC.........AAAGCCCATTTTtctTCCAAATGCAGAAGATGT...AGATTGTGTGATGAAGGACATGGCTTAGAAGTGGAAATAAACTGCACCCGG...ACCCAGAATACC...AAGTGC
VA53_VACCC/37-72 TGTGACAAGGGA---...GAATATCTTGAT.........AAGAGGCAT---...AATCAATGT------TGT...AATCGGTGTCCACCT------GGAGAATTTGCCAAGGTTAGATGTAATGGT...AACGATAACACA...AAATGT
TNR8_HUMAN/29-65 TGTCATGGAAACCCCagcCACTACTATGAC.........AAGGCTGTC---...AGGAGGTGC------TGT...TACCGCTGCCCCATG------GGGCTGTTCCCGACACAGCAGTGCCCACAG...---AGGCCTACT...GACTGC
CRMB_VARV/32-65 TGTAAAGACACC---...GAATACAAACGC.........CATAAT------...CTG---TGT------TGT...TTATCGTGTCCTCCG------GGAACATACGCTTCCAGATTATGTGATAGC...AAGACTAACACA...CAATGT
VT2_SFVKA/28-61 TGTGGAGGACAC---...GACTACGAAAAA.........GACGGA------...CTG---TGT------TGT...GCATCCTGTCATCCA------GGGTTTTATGCCTCTAGATTGTGCGGACCC...GGGTCCAATACG...GTGTGT
TNR6_MOUSE/125-161 TGCAAACCAGAC---...TTCTACTGCGATtct......CCTGGCTGT---...GAACACTGTGTTCGCTGC...GCCTCGTGTGAACAT------GGAACC------CTTGAGCCATGCACAGCA...ACCAGCAATACA...AACTGC
TNR6_HUMAN/129-165 TGTAAACCAAAC---...TTTTTTTGTAAC......tctACTGTATGT---...GAACACTGTGACCCTTGC...ACCAAATGTGAACAT------GGAATC------ATCAAGGAATGCACACTC...ACCAGCAACACC...AAGTGC
CRMB_VARV/68-108 TGTGGTTCGGGT---...ACCTTTACATCTcgc......AATAATCATTTA...CCCGCTTGTCTAAGTTGTaacGGAAGATGCAATAGT------AATCAGGTAGAGACGCGATCGTGTAACACG...ACTCACAATAGA...ATCTGT
VT2_SFVKA/64-104 TGTGAAGACGGA---...ACCTTTACGGCGagt......ACTAACCATGCC...CCTGCGTGCGTAAGTTGTcgaGGTCCGTGTACGGGG------CATCTATCCGAGTCTCAACCGTGCGATAGA...ACCCACGATAGA...GTCTGC
TNR1A_RAT/84-125 TGTGATAAAGGC---...ACCTTTACAGCTtcg......CAGAACCACGTC...AGACAGTGTCTCAGTTGC...AAGACATGTCGGAAAGAAATGTTCCAGGTGGAGATTTCTCCTTGCAAAGCT...GACATGGACACC...GTGTGT
TNR1A_HUMAN/84-125 TGTGAGAGCGGC---...TCCTTCACCGCTtca......GAAAACCACCTC...AGACACTGCCTCAGCTGC...TCCAAATGCCGAAAGGAAATGGGTCAGGTGGAGATCTCTTCTTGCACAGTG...GACCGGGACACC...GTGTGT
TNR1B_MOUSE/79-119 TGTGAGGCAAGC---...ATGTATACCCAGgtc......TGGAACCAGTTT...CGTACATGTTTGAGCTGCagtTCTTCCTGTACCACT------GACCAGGTGGAGATCCGCGCCTGCACTAAA...CAGCAGAACCGA...GTGTGT
TNR1B_HUMAN/78-118 TGTGAGGACAGC---...ACATACACCCAGctc......TGGAACTGGGTT...CCCGAGTGCTTGAGCTGTggcTCCCGCTGTAGCTCT------GACCAGGTGGAAACTCAAGCCTGCACTCGG...GAACAGAACCGC...ATCTGC
TNR8_HUMAN/69-106 TGTGAGCCTGAC---...TACTACCTGGAT.........GAGGCC------...GACCGCTGTACAGCCTGC...GTGACTTGTTCTCGAGAT---GACCTCGTGGAGAAGACGCCGTGTGCATGG...AACTCCTCCCGT...GTCTGC
TNR7_HUMAN/65-104 TGCATACCGGGGGTC...TCCTTCTCTCCTgac......CACCACACCCGG...CCCCACTGTGAGAGCTGT...CGGCACTGTAACTCT------GGTCTT---CTCGTTCGCAACTGCACCATC...ACTGCCAATGCT...GAGTGT
TNR9_MOUSE/47-85 TGCCCTCCAAGT---...ACCTTCTCCAGCata......GGTGGACAG---...CCGAACTGTAACATCTGC...AGAGTGTGTGCAGGC------TATTTCAGGTTCAAGAAGTTTTGCTCCTCT...ACCCACAACGCG...GAGTGT
TNR16_RAT/150-189 TGCCCAGAGGGC---...ACATACTCAGACgaa......GCCAACCACGTG...GACCCGTGCCTACCCTGC...ACGGTGTGCGAGGAC------ACTGAGCGCCAGTTACGCGAGTGCACGCCC...TGGGCTGATGCT...GAATGC
TNR16_RAT/68-108 TGCCTGGACAATGTT...ACATTCTCCGATgtggtg...AGCGCCACT---...GAGCCGTGCAAGCCGTGC...ACCGAGTGCCTGGGC------CTGCAGAGCATGTCCGCTCCCTGTGTGGAG...GCAGACGATGCA...GTGTGC